pycom16g13790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0001308
Physical Location & Seq
Forward (+)
9846558 .. 9847515
958 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 918 bp
ATGAACTCCCCGACGATACGACGCTACCAGCGACCGCGGAACCAGTCCAAATTGTTCGCGTCGGGTCATCAAAAGCCGAAACCAGGTTGGAGGCGAAGGCAAATCTACTCCGACATGTCAAAATTGTACGCTGTCACCAATTCCCACCACTCTTCCGCATTTTCCTGTCGTTTCCCGTCTGCCCTCCTTATTTTCCCGCACTTTCCCGGAAAATTTCCCAACCAAAATTCACCCCCTTTTAGTTTTAGACTCCAAAATTCCCAACCGGTTCCGACGATTTACTTTACCCACAATTCGAATTCGGCGGCCATGGACATCTCTCTCCTATATGACACCGTTACAGTCGCCACCACCGCCCAGGGCCTAGGGTTCGCCAAGTTCCTAATCCGTCACCATGACCTCACCTCCAACAACCAAATTTCCGTCACCGACAATCATACCGATCAATCCTCGCCGTCCATTGGAGTCCCCCAGATCTCTGCCGGTGTTTTCCCCTTCGACGCTGTTGCTCCGCCGCGTGCCCGGCCCAACTCTACCAAAACCTCAACCCGAACCCTCCTTCGCAAAAAACGTCGCGCCAGACGGAGATCGTCGGGCGGCGACGATTCTAACGATGGAGGCGAGGAAGATGGCGGGTTTTTCGGCGGAGATGGTCCCTTTTTCAATGGAGGGTGGGGCGGCAGTGGAGGCGGGGGCGGGGGTTGGAATTTCGATAGGTTTGGAGGGAATAGTTGGGATGAGTCTTCGTCGTCCTCTCCGTCCGATCCGGCTTTTGATTTCGTGTACGAGGTTTTGTGTTGGATTGCGCTTTCGAATTGCGTGCACTTCGCTTTCAAGAGGGTGATTCAAATTGTGGTGGATGGGTTGGGGGATGCTGACCGAGAGAAGGTGCCCATGAGGTTGACTTCGGTCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

306

Amino Acids

33.52

Weight (kDa)

9.69

Isoelectric Point (pI)

61.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 889
AccII CGCG 4 cut(s) 37, 59, 517, 576
AclWI GGATC 1 cut(s) 758
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 6 cut(s) 212, 226, 256, 298, 417, 706
AfaI GTAC 2 cut(s) 128, 785
AfiI CCNNNNNNNGG 3 cut(s) 83, 461, 886
AflIII ACRYGT 1 cut(s) 114
AgeI ACCGGT 1 cut(s) 265
AgsI TTSAA 3 cut(s) 664, 835, 848
AjnI CCWGG 2 cut(s) 82, 357
Alw21I GWGCWC 1 cut(s) 825
Alw44I GTGCAC 1 cut(s) 821
AlwI GGATC 1 cut(s) 758
AoxI GGCC 3 cut(s) 306, 361, 524
ApaLI GTGCAC 1 cut(s) 821
ApoI RAATTY 6 cut(s) 212, 226, 256, 298, 417, 706
AsiGI ACCGGT 1 cut(s) 265
AspA2I CCTAGG 1 cut(s) 364
AspLEI GCGC 2 cut(s) 578, 808
AspS9I GGNCC 3 cut(s) 361, 525, 653
AsuC2I CCSGG 2 cut(s) 207, 523
AsuHPI GGTGA 6 cut(s) 127, 222, 383, 394, 418, 853
AsuII TTCGAA 2 cut(s) 296, 812
AvaII GGWCC 1 cut(s) 653
AvrII CCTAGG 1 cut(s) 364
BaeGI GKGCMC 3 cut(s) 523, 825, 894
BanI GGYRCC 1 cut(s) 889
BbsI GAAGAC 1 cut(s) 735
Bbv12I GWGCWC 1 cut(s) 825
BccI CCATC 4 cut(s) 608, 623, 644, 854
BceAI ACGGC 1 cut(s) 439
BcgI CGANNNNNNTGC 4 cut(s) 488, 522, 802, 836
BciT130I CCWGG 2 cut(s) 84, 359
BcnI CCSGG 2 cut(s) 207, 523
BfaI CTAG 1 cut(s) 365
BglII AGATCT 1 cut(s) 474
BisI GCNGC 4 cut(s) 306, 515, 598, 679
BlnI CCTAGG 1 cut(s) 364
BlsI GCNGC 4 cut(s) 307, 516, 599, 680
Bme1390I CCNGG 4 cut(s) 84, 207, 359, 523
Bme18I GGWCC 1 cut(s) 653
BmgT120I GGNCC 3 cut(s) 361, 525, 653
BmiI GGNNCC 4 cut(s) 41, 270, 655, 891
BmrFI CCNGG 4 cut(s) 84, 207, 359, 523
BmsI GCATC 1 cut(s) 862
BoxI GACNNNNGTC 1 cut(s) 908
BpiI GAAGAC 1 cut(s) 735
Bpu14I TTCGAA 2 cut(s) 296, 812
BpuMI CCSGG 2 cut(s) 207, 523
BsaJI CCNNGG 5 cut(s) 35, 309, 357, 358, 364
BsaWI WCCGGW 1 cut(s) 265
BsaXI ACNNNNNCTCC 2 cut(s) 389, 419
Bsc4I CCNNNNNNNGG 3 cut(s) 83, 461, 886
Bse118I RCCGGY 2 cut(s) 265, 482
Bse1I ACTGG 1 cut(s) 43
BseBI CCWGG 2 cut(s) 84, 359
BseDI CCNNGG 5 cut(s) 35, 309, 357, 358, 364
BseGI GGATG 3 cut(s) 742, 865, 877
BseLI CCNNNNNNNGG 3 cut(s) 83, 461, 886
BseNI ACTGG 1 cut(s) 43
BseSI GKGCMC 3 cut(s) 523, 825, 894
Bsh1236I CGCG 4 cut(s) 37, 59, 517, 576
Bsh1285I CGRYCG 1 cut(s) 35
BshFI GGCC 3 cut(s) 308, 363, 526
BshNI GGYRCC 1 cut(s) 889
BshTI ACCGGT 1 cut(s) 265
BsiEI CGRYCG 1 cut(s) 35
BsiHKAI GWGCWC 1 cut(s) 825
BsiSI CCGG 5 cut(s) 207, 266, 483, 523, 767
BslFI GGGAC 2 cut(s) 452, 639
BslI CCNNNNNNNGG 3 cut(s) 83, 461, 886
BsmFI GGGAC 2 cut(s) 452, 639
BsnI GGCC 3 cut(s) 308, 363, 526
Bsp119I TTCGAA 2 cut(s) 296, 812
Bsp1286I GDGCHC 3 cut(s) 523, 825, 894
Bsp143I GATC 4 cut(s) 442, 474, 587, 763
Bsp19I CCATGG 1 cut(s) 309
BspANI GGCC 3 cut(s) 308, 363, 526
BspFNI CGCG 4 cut(s) 37, 59, 517, 576
BspLI GGNNCC 4 cut(s) 41, 270, 655, 891
BspPI GGATC 1 cut(s) 758
BspT104I TTCGAA 2 cut(s) 296, 812
BspT107I GGYRCC 1 cut(s) 889
BsrFI RCCGGY 2 cut(s) 265, 482
BsrI ACTGG 1 cut(s) 43
BssAI RCCGGY 2 cut(s) 265, 482
BssECI CCNNGG 5 cut(s) 35, 309, 357, 358, 364
BssMI GATC 4 cut(s) 442, 474, 587, 763
BssT1I CCWWGG 2 cut(s) 309, 364
Bst2UI CCWGG 2 cut(s) 84, 359
Bst4CI ACNGT 2 cut(s) 337, 343
Bst6I CTCTTC 1 cut(s) 157
BstBI TTCGAA 2 cut(s) 296, 812
BstC8I GCNNGC 2 cut(s) 519, 821
BstDSI CCRYGG 2 cut(s) 35, 309
BstF5I GGATG 3 cut(s) 742, 865, 877
BstFNI CGCG 4 cut(s) 37, 59, 517, 576
BstHHI GCGC 2 cut(s) 578, 808
BstKTI GATC 4 cut(s) 445, 477, 590, 766
BstMBI GATC 4 cut(s) 442, 474, 587, 763
BstMCI CGRYCG 1 cut(s) 35
BstMWI GCNNNNNNNGC 3 cut(s) 353, 523, 687
BstNI CCWGG 2 cut(s) 84, 359
BstNSI RCATGY 1 cut(s) 118
BstPAI GACNNNNGTC 1 cut(s) 908
BstSCI CCNGG 4 cut(s) 82, 205, 357, 521
BstSLI GKGCMC 3 cut(s) 523, 825, 894
BstUI CGCG 4 cut(s) 37, 59, 517, 576
BstV2I GAAGAC 1 cut(s) 735
BstX2I RGATCY 1 cut(s) 474
BstYI RGATCY 1 cut(s) 474
BsuRI GGCC 3 cut(s) 308, 363, 526
BtgI CCRYGG 2 cut(s) 35, 309
BtsCI GGATG 3 cut(s) 742, 865, 877
BtsI GCAGTG 1 cut(s) 688
BtsIMutI CAGTG 1 cut(s) 688
Cac8I GCNNGC 2 cut(s) 519, 821
CfoI GCGC 2 cut(s) 578, 808
Cfr10I RCCGGY 2 cut(s) 265, 482
Cfr13I GGNCC 3 cut(s) 361, 525, 653
Cfr42I CCGCGG 1 cut(s) 38
CseI GACGC 3 cut(s) 30, 48, 509
CsiI ACCWGGT 1 cut(s) 82
Csp6I GTAC 2 cut(s) 127, 784
CspAI ACCGGT 1 cut(s) 265
CviAII CATG 4 cut(s) 115, 310, 395, 895
CviJI RGCY 5 cut(s) 76, 308, 363, 526, 770
CviKI_1 RGCY 5 cut(s) 76, 308, 363, 526, 770
CviQI GTAC 2 cut(s) 127, 784
DpnI GATC 4 cut(s) 444, 476, 589, 765
DpnII GATC 4 cut(s) 442, 474, 587, 763
EaeI YGGCCR 1 cut(s) 306
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
EciI GGCGGA 2 cut(s) 501, 660
Eco130I CCWWGG 2 cut(s) 309, 364
Eco47I GGWCC 1 cut(s) 653
EcoO109I RGGNCCY 1 cut(s) 361
EcoRI GAATTC 1 cut(s) 298
EcoRII CCWGG 2 cut(s) 82, 357
EcoT14I CCWWGG 2 cut(s) 309, 364
ErhI CCWWGG 2 cut(s) 309, 364
FaeI CATG 4 cut(s) 118, 313, 398, 898
FaiI YATR 7 cut(s) 116, 311, 328, 330, 396, 438, 896
FaqI GGGAC 2 cut(s) 452, 639
FatI CATG 4 cut(s) 114, 309, 394, 894
FauI CCCGC 4 cut(s) 204, 626, 683, 689
Fnu4HI GCNGC 4 cut(s) 306, 515, 598, 679
FokI GGATG 3 cut(s) 749, 872, 884
Fsp4HI GCNGC 4 cut(s) 306, 515, 598, 679
FspBI CTAG 1 cut(s) 365
GlaI GCGC 2 cut(s) 577, 807
GluI GCNGC 4 cut(s) 306, 515, 598, 679
HaeIII GGCC 3 cut(s) 308, 363, 526
HapII CCGG 5 cut(s) 207, 266, 483, 523, 767
HgaI GACGC 3 cut(s) 30, 48, 509
HhaI GCGC 2 cut(s) 578, 808
Hin1II CATG 4 cut(s) 118, 313, 398, 898
Hin6I GCGC 2 cut(s) 576, 806
HinP1I GCGC 2 cut(s) 576, 806
HincII GTYRAC 1 cut(s) 903
HindII GTYRAC 1 cut(s) 903
HinfI GANTC 5 cut(s) 249, 465, 605, 740, 844
HpaII CCGG 5 cut(s) 207, 266, 483, 523, 767
HphI GGTGA 6 cut(s) 127, 222, 383, 394, 418, 853
Hpy166II GTNNAC 3 cut(s) 784, 823, 903
Hpy188I TCNGA 3 cut(s) 112, 273, 763
Hpy188III TCNNGA 1 cut(s) 835
Hpy8I GTNNAC 3 cut(s) 784, 823, 903
Hpy99I CGWCG 9 cut(s) 16, 24, 64, 277, 503, 576, 595, 605, 751
HpyAV CCTTC 4 cut(s) 90, 505, 569, 880
HpyCH4III ACNGT 2 cut(s) 337, 343
HpyCH4IV ACGT 1 cut(s) 571
HpyCH4V TGCA 1 cut(s) 823
HpyF10VI GCNNNNNNNGC 3 cut(s) 353, 523, 687
HpySE526I ACGT 1 cut(s) 571
Hsp92II CATG 4 cut(s) 118, 313, 398, 898
HspAI GCGC 2 cut(s) 576, 806
KspI CCGCGG 1 cut(s) 38
Kzo9I GATC 4 cut(s) 442, 474, 587, 763
LmnI GCTCC 1 cut(s) 514
LweI GCATC 1 cut(s) 862
MabI ACCWGGT 1 cut(s) 82
MaeI CTAG 1 cut(s) 365
MaeII ACGT 1 cut(s) 571
MaeIII GTNAC 4 cut(s) 133, 337, 389, 424
MalI GATC 4 cut(s) 444, 476, 589, 765
MboI GATC 4 cut(s) 442, 474, 587, 763
MboII GAAGA 3 cut(s) 144, 638, 735
MflI RGATCY 1 cut(s) 474
MhlI GDGCHC 3 cut(s) 523, 825, 894
MlyI GAGTC 3 cut(s) 243, 474, 749
MmeI TCCRAC 6 cut(s) 68, 135, 296, 432, 683, 779
MspA1I CMGCKG 1 cut(s) 37
MspI CCGG 5 cut(s) 207, 266, 483, 523, 767
MspR9I CCNGG 4 cut(s) 84, 207, 359, 523
MvaI CCWGG 2 cut(s) 84, 359
MvnI CGCG 4 cut(s) 37, 59, 517, 576
MwoI GCNNNNNNNGC 3 cut(s) 353, 523, 687
NciI CCSGG 2 cut(s) 207, 523
NcoI CCATGG 1 cut(s) 309
NdeII GATC 4 cut(s) 442, 474, 587, 763
NlaIII CATG 4 cut(s) 118, 313, 398, 898
NlaIV GGNNCC 4 cut(s) 41, 270, 655, 891
NmuCI GTSAC 3 cut(s) 133, 389, 424
NspI RCATGY 1 cut(s) 118
NspV TTCGAA 2 cut(s) 296, 812
PasI CCCWGGG 1 cut(s) 358
PciI ACATGT 1 cut(s) 114
PcsI WCGNNNNNNNCGW 5 cut(s) 28, 568, 609, 618, 755
PfeI GAWTC 2 cut(s) 605, 844
PfoI TCCNGGA 1 cut(s) 205
PinAI ACCGGT 1 cut(s) 265
PkrI GCNGC 4 cut(s) 307, 516, 599, 680
PleI GAGTC 3 cut(s) 243, 473, 748
PpsI GAGTC 3 cut(s) 243, 473, 748
PscI ACATGT 1 cut(s) 114
PshAI GACNNNNGTC 1 cut(s) 908
Psp6I CCWGG 2 cut(s) 82, 357
PspGI CCWGG 2 cut(s) 82, 357
PspN4I GGNNCC 4 cut(s) 41, 270, 655, 891
PspPI GGNCC 3 cut(s) 361, 525, 653
PsuI RGATCY 1 cut(s) 474
RsaI GTAC 2 cut(s) 128, 785
RsaNI GTAC 2 cut(s) 127, 784
SacII CCGCGG 1 cut(s) 38
SatI GCNGC 4 cut(s) 306, 515, 598, 679
Sau3AI GATC 4 cut(s) 442, 474, 587, 763
Sau96I GGNCC 3 cut(s) 361, 525, 653
SchI GAGTC 3 cut(s) 243, 474, 749
ScrFI CCNGG 4 cut(s) 84, 207, 359, 523
SduI GDGCHC 3 cut(s) 523, 825, 894
SetI ASST 9 cut(s) 88, 402, 407, 545, 574, 719, 792, 891, 902
SexAI ACCWGGT 1 cut(s) 82
SfaNI GCATC 1 cut(s) 862
Sfr303I CCGCGG 1 cut(s) 38
SfuI TTCGAA 2 cut(s) 296, 812
SgrBI CCGCGG 1 cut(s) 38
SinI GGWCC 1 cut(s) 653
SspMI CTAG 1 cut(s) 365
StyD4I CCNGG 4 cut(s) 82, 205, 357, 521
StyI CCWWGG 2 cut(s) 309, 364
TaaI ACNGT 2 cut(s) 337, 343
TaiI ACGT 1 cut(s) 574
TaqI TCGA 4 cut(s) 296, 498, 711, 812
TaqII GACCGA 2 cut(s) 894, 898
TauI GCSGC 4 cut(s) 308, 517, 600, 681
TfiI GAWTC 2 cut(s) 605, 844
TscAI CASTG 1 cut(s) 688
TseFI GTSAC 3 cut(s) 133, 389, 424
Tsp45I GTSAC 3 cut(s) 133, 389, 424
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 4 cut(s) 377, 412, 598, 747
TspRI CASTG 1 cut(s) 688
VneI GTGCAC 1 cut(s) 821
VpaK11BI GGWCC 1 cut(s) 653
XapI RAATTY 6 cut(s) 212, 226, 256, 298, 417, 706
XceI RCATGY 1 cut(s) 118
XmaJI CCTAGG 1 cut(s) 364
XspI CTAG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.