Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0000706

Physical Location & Seq

Genomic Coordinates Forward (+)

7741862 .. 7744019

Gene Structure 2158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGAAAATCCTTCAACCACTATACTTGTTGTGGCTTTACTTTGGGTTTCAGTAGTTGCAGCAACAAGAACTAAGCTGCAAGTGATTAACGACGCTAATGGTGGCATTTGCAAATCAATGGTGGAGACACAAGGCTATACTTGCCAAGAACATAAAGTAACAACCAGAGACGGCTACATCCTCGGCTTGCACAGAATTCCGAAGGGACGGTCTGCTAACAAGACGCCAAACAAGCAGCTGCCTGTTTTGTTACAACATGGGCTTTTAATGGATGCGTCAGCATGGCTACTCAATCCGCCAGATCAAGCTTTGGCATTTATCTTGGCAGACAATGGTTTCGATGTATGGCTTGCCAACACTCGCGGGACAAATTCTAGTCGCGGACATACGTTACTTACTCCTAATGATCCTGCTTACTGGGACTGGTCATGGGATGAATTGGCTGCTTATGATCTTCCTGCTTTATTTGAGTATGTGAACAATCAAACAGGACAGAAATTACATTATGTTGGTCACTCCTTGGGAACTTTGACTGCCCTTGCTGCCTTCTCTCAAGAAAATCTGTTAAACTTGCTAAGATCAGCTGCTTTGCTTGGCCCGGTCGCTTACCTGGGTCAGATGTCATCGCTGTTTCTAAGGATTCTTATGAACATATTTTTAGCAGAAAAACTGAAATTGTTGGGTTTGCCTGAATTTCCAAACGGTGAGACACAACAGCTTGTGAAGTTTATCTGCAAAACACCAGGCGTCGACTGCTCCGACTTATTGGCAACTATTACAGGCCCAAATTGCTGCCTCAGTTCTGCAGGCAAAGCTACTTTGTTTAAGAATTTTCCCCAGTCCACGGCGACAAAGAACATGATACATCTGTCTCAGATGGTCAGGATGGGAACCCTAGAAATGTACGATTATGGTCTAGAAGACGCGAACATGGAACACTACAAGCAGCCTACTCCTCCTGTGTACAACATGGCGAACATTCCGAAAGATGTTCCTCTTTTCCTCAGCTACGGGGGCAGAGATGCGATTTCTGATGTTAATGACGTGGGGCTTCTGCTTGACAACCTCAAAGATCATGACAAGGACAAGCTTGTGGTAGAGTACAGAGAGGATTATGCTCATCTGGATTTTATTATGAGTGTGAATGCCAATCAACTTGTGTATAATCCCATACTGGCATTCTTCAAGATCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002213 GO:0003674 GO:0003824 GO:0006950 GO:0006952 GO:0008150 GO:0016298 GO:0016787 GO:0016788 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00100 ko00561 ko01100 ko04142 ko04975 ko04979 map00100 map00561 map01100 map04142 map04975 map04979

Pfam Domains

Protein Families

Abhydro_lipase Abhydrolase_1 Hydrolase_4

Protein Analysis

399

Amino Acids

44.18

Weight (kDa)

5.87

Isoelectric Point (pI)

33.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydro_lipase	PF04083	39 - 98	1.1e-21	Partial alpha/beta-hydrolase lipase region
Abhydrolase_1	PF00561	81 - 280	1.7e-11	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	82 - 221	8.7e-06	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000706)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03230 FvH4_5g03471 FvH4_5g03472 FvH4_6g41950 FvH4_6g41951
malus_domestica	MD09G1115700.v1.1 MD09G1115900.v1.1 MD17G1107600.v1.1 MD17G1107700.v1.1
prunus_persica	Prupe.3G208700_v2.0.a1 Prupe.3G208800_v2.0.a1 Prupe.5G037500_v2.0.a1
pyrus_communis	pycom09g04010 pycom09g04030 pycom17g10020 pycom17g10030
rosa_chinensis	RchiOBHm_Chr2g0101861 RchiOBHm_Chr2g0157451 RchiOBHm_Chr2g0157461 RchiOBHm_Chr2g0157841 RchiOBHm_Chr2g0157851 RchiOBHm_Chr3g0484721 RchiOBHm_Chr3g0484731 RchiOBHm_Chr3g0484741 RchiOBHm_Chr3g0484751 RchiOBHm_Chr6g0253931 RchiOBHm_Chr6g0253991
rosa_laevigata	RLG00000014950 RLG00000014954 RLG00000020989 RLG00000021024 RLG00000021026 RLG00000021027 RLG00000021029 RLG00000021030
rosa_multiflora	Rmu_sc0000195.1_g000023 Rmu_sc0000195.1_g000028 Rmu_sc0001689.1_g000007 Rmu_sc0001716.1_g000018 Rmu_sc0002441.1_g000012 Rmu_sc0004191.1_g000065 Rmu_sc0004473.1_g000004
rosa_roxburghii	Rroxscaffold_1G00036760 Rroxscaffold_1G00036780 Rroxscaffold_2G00091900 Rroxscaffold_2G00092180 Rroxscaffold_2G00092200 Rroxscaffold_2G00127230 Rroxscaffold_7G00211340 Rroxscaffold_7G00211380
rosa_rugosa	Rorug02G0102500 Rorug02G0206400 Rorug02G0206500 Rorug02G0461400 Rorug02G0464100 Rorug05G0548600 Rorug05G0548800
rosa_samantha	Rh2BG155500 Rh2BG540100 Rh2BG540200 Rh2BG543500 Rh2BG543700 Rh2BG543800 Rh3CG296800 Rh6AG064700 Rh6AG065300
rosa_wichuraiana	Rw2G020570 Rw2G043520 Rw2G043530 Rw2G043770 Rw2G043780 Rw3G023530 Rw3G023540 Rw6G005750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	750
AccII	CGCG	3 cut(s)	363, 381, 926
AciI	CCGC	3 cut(s)	296, 363, 381
AclWI	GGATC	2 cut(s)	401, 1183
AcsI	RAATTY	4 cut(s)	195, 370, 692, 829
AcyI	GRCGYC	2 cut(s)	224, 747
AfaI	GTAC	3 cut(s)	905, 965, 1103
AfiI	CCNNNNNNNGG	1 cut(s)	844
AgsI	TTSAA	2 cut(s)	15, 1186
AjiI	CACGTC	1 cut(s)	1045
AjnI	CCWGG	2 cut(s)	609, 742
AluBI	AGCT	8 cut(s)	76, 238, 308, 584, 718, 815, 1008, 1090
AluI	AGCT	8 cut(s)	76, 238, 308, 584, 718, 815, 1008, 1090
Alw26I	GTCTC	4 cut(s)	119, 162, 701, 876
AlwI	GGATC	2 cut(s)	401, 1183
AoxI	GGCC	2 cut(s)	595, 781
ApeKI	GCWGC	9 cut(s)	59, 76, 235, 238, 443, 542, 584, 792, 946
ApoI	RAATTY	4 cut(s)	195, 370, 692, 829
ArsI	GACNNNNNNTTYG	4 cut(s)	194, 226, 320, 352
AspS9I	GGNCC	2 cut(s)	596, 782
AsuC2I	CCSGG	1 cut(s)	599
AsuHPI	GGTGA	1 cut(s)	716
BaeI	ACNNNNGTAYC	2 cut(s)	854, 887
BbsI	GAAGAC	1 cut(s)	927
BbvCI	CCTCAGC	1 cut(s)	1004
BbvI	GCAGC	9 cut(s)	63, 71, 225, 247, 430, 529, 571, 779, 958
BccI	CCATC	2 cut(s)	871, 880
BceAI	ACGGC	2 cut(s)	187, 861
BciT130I	CCWGG	2 cut(s)	611, 744
BcnI	CCSGG	1 cut(s)	599
BcoDI	GTCTC	4 cut(s)	119, 162, 701, 876
BfaI	CTAG	3 cut(s)	375, 896, 917
BfmI	CTRYAG	1 cut(s)	804
BisI	GCNGC	9 cut(s)	60, 77, 236, 239, 444, 543, 585, 793, 947
BlsI	GCNGC	9 cut(s)	61, 78, 237, 240, 445, 544, 586, 794, 948
Bme1390I	CCNGG	3 cut(s)	599, 611, 744
BmgBI	CACGTC	1 cut(s)	1045
BmgT120I	GGNCC	2 cut(s)	596, 782
BmiI	GGNNCC	1 cut(s)	892
BmrFI	CCNGG	3 cut(s)	599, 611, 744
BmrI	ACTGGG	2 cut(s)	427, 832
BmsI	GCATC	2 cut(s)	262, 1012
BmuI	ACTGGG	2 cut(s)	427, 832
BpiI	GAAGAC	1 cut(s)	927
Bpu10I	CCTNAGC	1 cut(s)	1004
BpuEI	CTTGAG	1 cut(s)	537
BpuMI	CCSGG	1 cut(s)	599
BsaHI	GRCGYC	2 cut(s)	224, 747
BsaJI	CCNNGG	4 cut(s)	181, 519, 610, 843
Bsc4I	CCNNNNNNNGG	1 cut(s)	844
Bse1I	ACTGG	4 cut(s)	422, 428, 838, 1179
BseBI	CCWGG	2 cut(s)	611, 744
BseDI	CCNNGG	4 cut(s)	181, 519, 610, 843
BseGI	GGATG	4 cut(s)	177, 277, 439, 891
BseLI	CCNNNNNNNGG	1 cut(s)	844
BseMII	CTCAG	3 cut(s)	811, 887, 1018
BseNI	ACTGG	4 cut(s)	422, 428, 838, 1179
BseRI	GAGGAG	1 cut(s)	945
BseXI	GCAGC	9 cut(s)	63, 71, 225, 247, 430, 529, 571, 779, 958
Bsh1236I	CGCG	3 cut(s)	363, 381, 926
Bsh1285I	CGRYCG	1 cut(s)	603
BshFI	GGCC	2 cut(s)	597, 783
BsiEI	CGRYCG	1 cut(s)	603
BsiSI	CCGG	1 cut(s)	599
BslFI	GGGAC	3 cut(s)	219, 379, 434
BslI	CCNNNNNNNGG	1 cut(s)	844
BsmAI	GTCTC	4 cut(s)	119, 162, 701, 876
BsmBI	CGTCTC	1 cut(s)	162
BsmFI	GGGAC	3 cut(s)	219, 379, 434
BsmI	GAATGC	2 cut(s)	1150, 1178
BsnI	GGCC	2 cut(s)	597, 783
Bsp1407I	TGTACA	1 cut(s)	963
Bsp143I	GATC	6 cut(s)	301, 406, 451, 578, 1072, 1188
BspACI	CCGC	3 cut(s)	296, 363, 381
BspANI	GGCC	2 cut(s)	597, 783
BspCNI	CTCAG	3 cut(s)	810, 886, 1017
BspFNI	CGCG	3 cut(s)	363, 381, 926
BspHI	TCATGA	1 cut(s)	1075
BspLI	GGNNCC	1 cut(s)	892
BspMAI	CTGCAG	1 cut(s)	808
BspPI	GGATC	2 cut(s)	401, 1183
BsrGI	TGTACA	1 cut(s)	963
BsrI	ACTGG	4 cut(s)	422, 428, 838, 1179
BssECI	CCNNGG	4 cut(s)	181, 519, 610, 843
BssMI	GATC	6 cut(s)	301, 406, 451, 578, 1072, 1188
BssNI	GRCGYC	2 cut(s)	224, 747
BssT1I	CCWWGG	1 cut(s)	519
Bst2UI	CCWGG	2 cut(s)	611, 744
Bst4CI	ACNGT	2 cut(s)	210, 704
BstACI	GRCGYC	2 cut(s)	224, 747
BstAUI	TGTACA	1 cut(s)	963
BstC8I	GCNNGC	3 cut(s)	188, 351, 808
BstDEI	CTNAG	6 cut(s)	72, 575, 635, 797, 873, 1004
BstDSI	CCRYGG	1 cut(s)	843
BstF5I	GGATG	4 cut(s)	177, 277, 439, 891
BstFNI	CGCG	3 cut(s)	363, 381, 926
BstKTI	GATC	6 cut(s)	304, 409, 454, 581, 1075, 1191
BstMAI	GTCTC	4 cut(s)	119, 162, 701, 876
BstMBI	GATC	6 cut(s)	301, 406, 451, 578, 1072, 1188
BstMCI	CGRYCG	1 cut(s)	603
BstMWI	GCNNNNNNNGC	7 cut(s)	141, 232, 542, 753, 789, 812, 1014
BstNI	CCWGG	2 cut(s)	611, 744
BstSCI	CCNGG	3 cut(s)	597, 609, 742
BstSFI	CTRYAG	1 cut(s)	804
BstUI	CGCG	3 cut(s)	363, 381, 926
BstV1I	GCAGC	9 cut(s)	63, 71, 225, 247, 430, 529, 571, 779, 958
BstV2I	GAAGAC	1 cut(s)	927
BstX2I	RGATCY	1 cut(s)	1188
BstYI	RGATCY	1 cut(s)	1188
BsuRI	GGCC	2 cut(s)	597, 783
BtgI	CCRYGG	1 cut(s)	843
BtgZI	GCGATG	1 cut(s)	609
BtrI	CACGTC	1 cut(s)	1045
BtsCI	GGATG	4 cut(s)	177, 277, 439, 891
Cac8I	GCNNGC	3 cut(s)	188, 351, 808
CciI	TCATGA	1 cut(s)	1075
Cfr13I	GGNCC	2 cut(s)	596, 782
CseI	GACGC	5 cut(s)	101, 232, 264, 736, 932
Csp6I	GTAC	3 cut(s)	904, 964, 1102
CspCI	CAANNNNNGTGG	2 cut(s)	7, 42
CviAII	CATG	7 cut(s)	257, 282, 429, 859, 931, 970, 1076
CviQI	GTAC	3 cut(s)	904, 964, 1102
DdeI	CTNAG	6 cut(s)	72, 575, 635, 797, 873, 1004
DpnI	GATC	6 cut(s)	303, 408, 453, 580, 1074, 1190
DpnII	GATC	6 cut(s)	301, 406, 451, 578, 1072, 1188
EciI	GGCGGA	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	519
EcoRI	GAATTC	1 cut(s)	195
EcoRII	CCWGG	2 cut(s)	609, 742
EcoT14I	CCWWGG	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	519
Esp3I	CGTCTC	1 cut(s)	162
FaeI	CATG	7 cut(s)	260, 285, 432, 862, 934, 973, 1079
FaqI	GGGAC	3 cut(s)	219, 379, 434
FatI	CATG	7 cut(s)	256, 281, 428, 858, 930, 969, 1075
FauI	CCCGC	1 cut(s)	356
FblI	GTMKAC	1 cut(s)	750
Fnu4HI	GCNGC	9 cut(s)	60, 77, 236, 239, 444, 543, 585, 793, 947
FokI	GGATG	4 cut(s)	164, 284, 446, 898
Fsp4HI	GCNGC	9 cut(s)	60, 77, 236, 239, 444, 543, 585, 793, 947
FspBI	CTAG	3 cut(s)	375, 896, 917
GluI	GCNGC	9 cut(s)	60, 77, 236, 239, 444, 543, 585, 793, 947
HaeIII	GGCC	2 cut(s)	597, 783
HapII	CCGG	1 cut(s)	599
HgaI	GACGC	5 cut(s)	101, 232, 264, 736, 932
Hin1I	GRCGYC	2 cut(s)	224, 747
Hin1II	CATG	7 cut(s)	260, 285, 432, 862, 934, 973, 1079
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HindIII	AAGCTT	2 cut(s)	306, 1088
HinfI	GANTC	1 cut(s)	640
HpaII	CCGG	1 cut(s)	599
HphI	GGTGA	1 cut(s)	716
Hpy166II	GTNNAC	4 cut(s)	478, 751, 843, 964
Hpy188I	TCNGA	6 cut(s)	201, 618, 760, 876, 984, 1033
Hpy188III	TCNNGA	6 cut(s)	554, 883, 917, 1076, 1124, 1186
Hpy8I	GTNNAC	4 cut(s)	478, 751, 843, 964
Hpy99I	CGWCG	2 cut(s)	95, 752
HpyAV	CCTTC	3 cut(s)	21, 196, 556
HpyCH4III	ACNGT	2 cut(s)	210, 704
HpyCH4IV	ACGT	2 cut(s)	389, 1044
HpyCH4V	TGCA	6 cut(s)	59, 79, 111, 190, 735, 806
HpyF10VI	GCNNNNNNNGC	7 cut(s)	141, 232, 542, 753, 789, 812, 1014
HpyF3I	CTNAG	6 cut(s)	72, 575, 635, 797, 873, 1004
HpySE526I	ACGT	2 cut(s)	389, 1044
Hsp92I	GRCGYC	2 cut(s)	224, 747
Hsp92II	CATG	7 cut(s)	260, 285, 432, 862, 934, 973, 1079
Kzo9I	GATC	6 cut(s)	301, 406, 451, 578, 1072, 1188
LmnI	GCTCC	1 cut(s)	761
Lsp1109I	GCAGC	9 cut(s)	63, 71, 225, 247, 430, 529, 571, 779, 958
LweI	GCATC	2 cut(s)	262, 1012
MaeI	CTAG	3 cut(s)	375, 896, 917
MaeII	ACGT	2 cut(s)	389, 1044
MaeIII	GTNAC	4 cut(s)	157, 249, 390, 512
MalI	GATC	6 cut(s)	303, 408, 453, 580, 1074, 1190
MboI	GATC	6 cut(s)	301, 406, 451, 578, 1072, 1188
MboII	GAAGA	3 cut(s)	446, 932, 1174
MflI	RGATCY	1 cut(s)	1188
MluCI	AATT	8 cut(s)	195, 370, 437, 497, 674, 692, 787, 829
MmeI	TCCRAC	1 cut(s)	783
MnlI	CCTC	7 cut(s)	191, 806, 966, 1005, 1013, 1076, 1102
MseI	TTAA	6 cut(s)	87, 266, 566, 825, 1038, 1195
MspA1I	CMGCKG	2 cut(s)	238, 584
MspI	CCGG	1 cut(s)	599
MspR9I	CCNGG	3 cut(s)	599, 611, 744
Mva1269I	GAATGC	2 cut(s)	1150, 1178
MvaI	CCWGG	2 cut(s)	611, 744
MvnI	CGCG	3 cut(s)	363, 381, 926
MwoI	GCNNNNNNNGC	7 cut(s)	141, 232, 542, 753, 789, 812, 1014
NciI	CCSGG	1 cut(s)	599
NdeII	GATC	6 cut(s)	301, 406, 451, 578, 1072, 1188
NlaIII	CATG	7 cut(s)	260, 285, 432, 862, 934, 973, 1079
NlaIV	GGNNCC	1 cut(s)	892
NmeAIII	GCCGAG	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	512
PagI	TCATGA	1 cut(s)	1075
PcsI	WCGNNNNNNNCGW	1 cut(s)	756
PctI	GAATGC	2 cut(s)	1150, 1178
PfeI	GAWTC	1 cut(s)	640
PkrI	GCNGC	9 cut(s)	61, 78, 237, 240, 445, 544, 586, 794, 948
Psp6I	CCWGG	2 cut(s)	609, 742
PspGI	CCWGG	2 cut(s)	609, 742
PspN4I	GGNNCC	1 cut(s)	892
PspPI	GGNCC	2 cut(s)	596, 782
PstI	CTGCAG	1 cut(s)	808
PsuI	RGATCY	1 cut(s)	1188
PvuII	CAGCTG	2 cut(s)	238, 584
RsaI	GTAC	3 cut(s)	905, 965, 1103
RsaNI	GTAC	3 cut(s)	904, 964, 1102
SalI	GTCGAC	1 cut(s)	749
SaqAI	TTAA	6 cut(s)	87, 266, 566, 825, 1038, 1195
SatI	GCNGC	9 cut(s)	60, 77, 236, 239, 444, 543, 585, 793, 947
Sau3AI	GATC	6 cut(s)	301, 406, 451, 578, 1072, 1188
Sau96I	GGNCC	2 cut(s)	596, 782
ScrFI	CCNGG	3 cut(s)	599, 611, 744
SfaNI	GCATC	2 cut(s)	262, 1012
SfcI	CTRYAG	1 cut(s)	804
SmlI	CTYRAG	1 cut(s)	552
SmoI	CTYRAG	1 cut(s)	552
Sse9I	AATT	8 cut(s)	195, 370, 437, 497, 674, 692, 787, 829
SsiI	CCGC	3 cut(s)	296, 363, 381
SspMI	CTAG	3 cut(s)	375, 896, 917
StyD4I	CCNGG	3 cut(s)	597, 609, 742
StyI	CCWWGG	1 cut(s)	519
TaaI	ACNGT	2 cut(s)	210, 704
TaiI	ACGT	2 cut(s)	392, 1047
TaqI	TCGA	2 cut(s)	339, 750
TasI	AATT	8 cut(s)	195, 370, 437, 497, 674, 692, 787, 829
TatI	WGTACW	2 cut(s)	963, 1101
TfiI	GAWTC	1 cut(s)	640
Tru1I	TTAA	6 cut(s)	87, 266, 566, 825, 1038, 1195
Tru9I	TTAA	6 cut(s)	87, 266, 566, 825, 1038, 1195
TseFI	GTSAC	1 cut(s)	512
TseI	GCWGC	9 cut(s)	59, 76, 235, 238, 443, 542, 584, 792, 946
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	2 cut(s)	450, 662
XapI	RAATTY	4 cut(s)	195, 370, 692, 829
XbaI	TCTAGA	1 cut(s)	916
XmiI	GTMKAC	1 cut(s)	750
XspI	CTAG	3 cut(s)	375, 896, 917

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.