Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000956

Physical Location & Seq

Genomic Coordinates Reverse (-)

12435188 .. 12435667

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCCTCGAGTGAAAAAAACCACCAAGGGCACCAACACTGTGGAAGTGTCATTCATTGGTTTCTTCTTGGGACGAAGTCATAAGCTTGTTCCATTGTTAACTAAGAGGTTCCCTGAATTTGGTTTGCAAAGTAGAGATAGCATTGAAATGAGTTGGATAAACTCCACCGTATTCTGGGCTGATTTCCCACTAGGAACTCCCACTTCTGTTCTTCTTAACAGGCTAAAAAAGGCACCAGAAATGTTCTTCAAGAACAAGTCTGATTACGTGAAAGAGCCGATTCCAAAAGCAGCGATCGAAACCATGTGGCAGATGCAGCTGAAGATAGGGAAGATGGCGATGCAATGGAACCCTTATTGTGGAAGAATGAGCGAGATTTCCGAGTCGCTGACTCCATTCCCACATAGAGCAGGAAACTTTTTTATGATTTCATTACGTCACTATCTTGGCGAACGAAACGGACACAGAGAAGTACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

159

Amino Acids

18.45

Weight (kDa)

10.0

Isoelectric Point (pI)

50.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26380 AT1G26390 AT1G26400 AT1G26410 AT1G26420 AT4G20800
fragaria_vesca	FvH4_3g11042 FvH4_3g11043 FvH4_3g11044 FvH4_3g11090
malus_domestica	MD05G1266700.v1.1 MD05G1266800.v1.1 MD05G1267200.v1.1 MD05G1267300.v1.1 MD10G1243900.v1.1 MD10G1244000.v1.1
prunus_persica	Prupe.1G032800_v2.0.a1 Prupe.4G092300_v2.0.a1 Prupe.4G098500_v2.0.a1 Prupe.4G098600_v2.0.a1 Prupe.4G098700_v2.0.a1 Prupe.4G098900_v2.0.a1 Prupe.4G099000_v2.0.a1 Prupe.4G099100_v2.0.a1 Prupe.4G099200_v2.0.a1 Prupe.4G099400_v2.0.a1 Prupe.4G230400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0017771 RchiOBHm_Chr5g0017801 RchiOBHm_Chr5g0017831 RchiOBHm_Chr5g0017861 RchiOBHm_Chr5g0017931 RchiOBHm_Chr5g0017951 RchiOBHm_Chr5g0017981
rosa_laevigata	RLG00000032314 RLG00000032315 RLG00000032316 RLG00000032324 RLG00000032325 RLG00000032328 RLG00000032349
rosa_multiflora	Rmu_sc0003375.1_g000007 Rmu_sc0003834.1_g000007 Rmu_sc0003834.1_g000013 Rmu_sc0003834.1_g000014 Rmu_sc0005929.1_g000010 Rmu_sc0005929.1_g000016 Rmu_sc0011118.1_g000003 Rmu_sc0011171.1_g000007 Rmu_sc0013814.1_g000002 Rmu_sc0014753.1_g000007
rosa_roxburghii	Rroxscaffold_1G00059450 Rroxscaffold_1G00059620 Rroxscaffold_1G00059700 Rroxscaffold_1G00059710
rosa_rugosa	Rorug05G0038600 Rorug05G0038700 Rorug05G0038900 Rorug05G0039200 Rorug05G0039300
rosa_wichuraiana	Rw5G011460 Rw5G011500 Rw5G011520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	29, 232
AcsI	RAATTY	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	341
AfaI	GTAC	1 cut(s)	474
AfiI	CCNNNNNNNGG	3 cut(s)	119, 174, 359
AgsI	TTSAA	2 cut(s)	146, 250
AluBI	AGCT	2 cut(s)	85, 319
AluI	AGCT	2 cut(s)	85, 319
Ama87I	CYCGRG	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	290, 316
ApoI	RAATTY	1 cut(s)	116
AvaI	CYCGRG	1 cut(s)	6
BaeGI	GKGCMC	1 cut(s)	32
BanI	GGYRCC	2 cut(s)	29, 232
BbvI	GCAGC	2 cut(s)	302, 328
BccI	CCATC	1 cut(s)	328
BfaI	CTAG	1 cut(s)	191
BisI	GCNGC	2 cut(s)	291, 317
BlsI	GCNGC	2 cut(s)	292, 318
BmeT110I	CYCGRG	1 cut(s)	6
BmiI	GGNNCC	4 cut(s)	31, 110, 234, 350
BmsI	GCATC	2 cut(s)	303, 330
BsaAI	YACGTR	1 cut(s)	268
BsaJI	CCNNGG	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 174, 359
Bse3DI	GCAATG	1 cut(s)	350
BseDI	CCNNGG	1 cut(s)	24
BseLI	CCNNNNNNNGG	3 cut(s)	119, 174, 359
BseMI	GCAATG	1 cut(s)	350
BseSI	GKGCMC	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	302, 328
Bsh1285I	CGRYCG	1 cut(s)	297
BshNI	GGYRCC	2 cut(s)	29, 232
BsiEI	CGRYCG	1 cut(s)	297
BsiHKCI	CYCGRG	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	3 cut(s)	119, 174, 359
BsmFI	GGGAC	1 cut(s)	84
BsoBI	CYCGRG	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	1 cut(s)	294
BspLI	GGNNCC	4 cut(s)	31, 110, 234, 350
BspT107I	GGYRCC	2 cut(s)	29, 232
BsrDI	GCAATG	1 cut(s)	350
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	40, 169
BstBAI	YACGTR	1 cut(s)	268
BstDEI	CTNAG	1 cut(s)	102
BstKTI	GATC	1 cut(s)	297
BstMBI	GATC	1 cut(s)	294
BstMCI	CGRYCG	1 cut(s)	297
BstMWI	GCNNNNNNNGC	1 cut(s)	316
BstSLI	GKGCMC	1 cut(s)	32
BstV1I	GCAGC	2 cut(s)	302, 328
BstXI	CCANNNNNNTGG	1 cut(s)	40
BtgZI	GCGATG	1 cut(s)	353
BtsIMutI	CAGTG	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	473
CviAII	CATG	1 cut(s)	304
CviJI	RGCY	5 cut(s)	85, 179, 223, 277, 319
CviKI_1	RGCY	5 cut(s)	85, 179, 223, 277, 319
CviQI	GTAC	1 cut(s)	473
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	1 cut(s)	296
DpnII	GATC	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	341
Eco88I	CYCGRG	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	1 cut(s)	307
FaiI	YATR	4 cut(s)	81, 305, 405, 425
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	1 cut(s)	303
Fnu4HI	GCNGC	2 cut(s)	291, 317
Fsp4HI	GCNGC	2 cut(s)	291, 317
FspBI	CTAG	1 cut(s)	191
GluI	GCNGC	2 cut(s)	291, 317
Hin1II	CATG	1 cut(s)	307
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	3 cut(s)	280, 383, 391
HpaI	GTTAAC	1 cut(s)	99
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	2 cut(s)	262, 382
Hpy188III	TCNNGA	1 cut(s)	250
Hpy8I	GTNNAC	1 cut(s)	99
HpyCH4III	ACNGT	2 cut(s)	40, 169
HpyCH4IV	ACGT	2 cut(s)	267, 436
HpyCH4V	TGCA	3 cut(s)	127, 316, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	316
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	2 cut(s)	267, 436
Hsp92II	CATG	1 cut(s)	307
KspAI	GTTAAC	1 cut(s)	99
Kzo9I	GATC	1 cut(s)	294
LpnPI	CCDG	5 cut(s)	126, 160, 205, 249, 396
Lsp1109I	GCAGC	2 cut(s)	302, 328
LweI	GCATC	2 cut(s)	303, 330
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	2 cut(s)	267, 436
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	1 cut(s)	296
MboI	GATC	1 cut(s)	294
MboII	GAAGA	6 cut(s)	55, 203, 238, 334, 343, 375
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	1 cut(s)	116
MlyI	GAGTC	2 cut(s)	385, 392
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	2 cut(s)	15, 99
MseI	TTAA	2 cut(s)	98, 216
MslI	CAYNNNNRTG	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	319
MwoI	GCNNNNNNNGC	1 cut(s)	316
NdeII	GATC	1 cut(s)	294
NlaIII	CATG	1 cut(s)	307
NlaIV	GGNNCC	4 cut(s)	31, 110, 234, 350
NmuCI	GTSAC	1 cut(s)	437
PaeR7I	CTCGAG	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	280
PflFI	GACNNNGTC	1 cut(s)	75
PkrI	GCNGC	2 cut(s)	292, 318
Ple19I	CGATCG	1 cut(s)	297
PleI	GAGTC	2 cut(s)	385, 391
PpsI	GAGTC	2 cut(s)	385, 391
Ppu21I	YACGTR	1 cut(s)	268
PspN4I	GGNNCC	4 cut(s)	31, 110, 234, 350
PspXI	VCTCGAGB	1 cut(s)	6
PsyI	GACNNNGTC	1 cut(s)	75
PvuI	CGATCG	1 cut(s)	297
PvuII	CAGCTG	1 cut(s)	319
RsaI	GTAC	1 cut(s)	474
RsaNI	GTAC	1 cut(s)	473
RseI	CAYNNNNRTG	1 cut(s)	146
SaqAI	TTAA	2 cut(s)	98, 216
SatI	GCNGC	2 cut(s)	291, 317
Sau3AI	GATC	1 cut(s)	294
SchI	GAGTC	2 cut(s)	385, 392
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	5 cut(s)	87, 110, 270, 321, 439
SfaNI	GCATC	2 cut(s)	303, 330
Sfr274I	CTCGAG	1 cut(s)	6
SlaI	CTCGAG	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
Sse9I	AATT	1 cut(s)	116
SspMI	CTAG	1 cut(s)	191
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	2 cut(s)	40, 169
TaiI	ACGT	2 cut(s)	270, 439
TaqI	TCGA	2 cut(s)	7, 297
TasI	AATT	1 cut(s)	116
TatI	WGTACW	1 cut(s)	472
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	2 cut(s)	98, 216
Tru9I	TTAA	2 cut(s)	98, 216
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	2 cut(s)	290, 316
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	2 cut(s)	43, 420
TspGWI	ACGGA	1 cut(s)	474
TspRI	CASTG	1 cut(s)	43
Tth111I	GACNNNGTC	1 cut(s)	75
XapI	RAATTY	1 cut(s)	116
XhoI	CTCGAG	1 cut(s)	6
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.