Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Forward (+)

45270285 .. 45270615

Gene Structure 331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGCTGTCCTTGTTCAAGAAATAATAAATGTCGACTATGCATTCGTTATTCACACAACTAACCCATCTTCAGGAGACTCGTCGGAGATATATGCCGAGGTTGTCAAAGGTCTTGGAGAAACCTTAGTTGGAGCTTATCCTGGACGTGCCTTAAGTTTTATTAGCAAGAAAAATGCTCTGGACTCTCCTCAGGTAATGCACTACAGTGCCAAAAGTGGCATAAGAGTAACAGACCATGTAGGGATTGAATTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009631 GO:0009941 GO:0009987 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016781 GO:0031967 GO:0031975 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050521 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPDK_N

Protein Analysis

85

Amino Acids

9.14

Weight (kDa)

5.68

Isoelectric Point (pI)

50.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	33
AcuI	CTGAAG	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	71
AflII	CTTAAG	1 cut(s)	151
AgsI	TTSAA	2 cut(s)	17, 248
AjiI	CACGTC	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	139
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
AleI	CACNNNNGTG	1 cut(s)	204
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
Alw26I	GTCTC	1 cut(s)	69
ArsI	GACNNNNNNTTYG	2 cut(s)	26, 58
AxyI	CCTNAGG	1 cut(s)	189
BccI	CCATC	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	69
BfmI	CTRYAG	1 cut(s)	202
BfrI	CTTAAG	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	141
BmgBI	CACGTC	1 cut(s)	146
BmrFI	CCNGG	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse21I	CCTNAGG	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMII	CTCAG	1 cut(s)	203
BseRI	GAGGAG	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	69
BsmI	GAATGC	1 cut(s)	41
BspCNI	CTCAG	1 cut(s)	202
BspTI	CTTAAG	1 cut(s)	151
BssECI	CCNNGG	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	1 cut(s)	206
BstAFI	CTTAAG	1 cut(s)	151
BstDEI	CTNAG	2 cut(s)	124, 189
BstMAI	GTCTC	1 cut(s)	69
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	139
BstSFI	CTRYAG	1 cut(s)	202
Bsu36I	CCTNAGG	1 cut(s)	189
BtrI	CACGTC	1 cut(s)	146
BtsIMutI	CAGTG	1 cut(s)	211
CviAII	CATG	1 cut(s)	236
CviJI	RGCY	2 cut(s)	5, 134
CviKI_1	RGCY	2 cut(s)	5, 134
DdeI	CTNAG	2 cut(s)	124, 189
Eco57I	CTGAAG	1 cut(s)	54
Eco81I	CCTNAGG	1 cut(s)	189
EcoRII	CCWGG	1 cut(s)	139
EcoT22I	ATGCAT	1 cut(s)	43
FaeI	CATG	1 cut(s)	239
FaiI	YATR	5 cut(s)	39, 91, 93, 221, 237
FatI	CATG	1 cut(s)	235
FblI	GTMKAC	1 cut(s)	33
Hin1II	CATG	1 cut(s)	239
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	2 cut(s)	77, 182
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	3 cut(s)	17, 72, 179
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	1 cut(s)	85
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	3 cut(s)	41, 199, 253
HpyF3I	CTNAG	2 cut(s)	124, 189
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	1 cut(s)	239
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	5 cut(s)	57, 126, 153, 164, 176
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	226
MboII	GAAGA	1 cut(s)	60
MluCI	AATT	1 cut(s)	248
MlyI	GAGTC	2 cut(s)	71, 176
MmeI	TCCRAC	2 cut(s)	63, 109
MnlI	CCTC	2 cut(s)	91, 198
Mph1103I	ATGCAT	1 cut(s)	43
MseI	TTAA	1 cut(s)	152
MslI	CAYNNNNRTG	1 cut(s)	204
MspCI	CTTAAG	1 cut(s)	151
MspR9I	CCNGG	1 cut(s)	141
Mva1269I	GAATGC	1 cut(s)	41
MvaI	CCWGG	1 cut(s)	141
NlaIII	CATG	1 cut(s)	239
NmeAIII	GCCGAG	1 cut(s)	121
NsiI	ATGCAT	1 cut(s)	43
OliI	CACNNNNGTG	1 cut(s)	204
PctI	GAATGC	1 cut(s)	41
PfoI	TCCNGGA	1 cut(s)	139
PleI	GAGTC	2 cut(s)	71, 176
PpsI	GAGTC	2 cut(s)	71, 176
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	204
SalI	GTCGAC	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	152
SchI	GAGTC	2 cut(s)	71, 176
ScrFI	CCNGG	1 cut(s)	141
SetI	ASST	6 cut(s)	102, 112, 125, 136, 148, 195
SfcI	CTRYAG	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	151
SmoI	CTYRAG	1 cut(s)	151
Sse9I	AATT	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	139
TaaI	ACNGT	1 cut(s)	206
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	1 cut(s)	33
TasI	AATT	1 cut(s)	248
Tru1I	TTAA	1 cut(s)	152
Tru9I	TTAA	1 cut(s)	152
TscAI	CASTG	1 cut(s)	211
TspRI	CASTG	1 cut(s)	211
Vha464I	CTTAAG	1 cut(s)	151
XmiI	GTMKAC	1 cut(s)	33
Zsp2I	ATGCAT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.