Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Reverse (-)

10492224 .. 10495028

Gene Structure 2805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00226800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGAAACAGCTCTGGTTGTGGGTTCACAGGATGAAGTATGGGATAGAGAAGTGAAGCCGGTGGTTCGAGCTGGGAGGGTAACCAGGCGGTGGTGCGGGGGTCGGGCCATGGCGGCCACCACCATCCCACTGGAGACCCATCAACTTAAGAGCATAATGAAGAGTTCAAGAATACCTTGGCATGGTGACGAAGGTGACGAGAGGTGGAATCAAGCTTGGCGTACAATAAAGAAGATAGTTAAAGGCTTGGAAGAGACTTTCGTGGGTGCGTATCCTGGACGAGCCATGAGATTCATAACCCAGAAATCCAATCTAAACTCTCCTATTGTAAGGGAAACTTTTAACATATCAGATGACAATATTTGCTTCATTAACCAATCGACATCTCAAGCATTACTATGGCTCTCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2934 PPDK_N

Protein Analysis

137

Amino Acids

15.63

Weight (kDa)

9.1

Isoelectric Point (pI)

44.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	90
AciI	CCGC	3 cut(s)	88, 96, 113
AcoI	YGGCCR	1 cut(s)	114
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	2 cut(s)	90, 182
AflII	CTTAAG	1 cut(s)	146
AgsI	TTSAA	1 cut(s)	168
AjnI	CCWGG	2 cut(s)	83, 274
AluBI	AGCT	3 cut(s)	11, 71, 215
AluI	AGCT	3 cut(s)	11, 71, 215
Alw26I	GTCTC	2 cut(s)	128, 248
AoxI	GGCC	2 cut(s)	105, 114
AspS9I	GGNCC	1 cut(s)	105
AsuHPI	GGTGA	2 cut(s)	197, 206
BccI	CCATC	2 cut(s)	131, 147
BciT130I	CCWGG	2 cut(s)	85, 276
BciVI	GTATCC	1 cut(s)	282
BcoDI	GTCTC	2 cut(s)	128, 248
BfrI	CTTAAG	1 cut(s)	146
BfuI	GTATCC	1 cut(s)	282
BglI	GCCNNNNNGGC	1 cut(s)	113
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
Bme1390I	CCNGG	2 cut(s)	85, 276
BmgT120I	GGNCC	1 cut(s)	105
BmrFI	CCNGG	2 cut(s)	85, 276
BpmI	CTGGAG	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	372
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	108, 176
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 182
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	135
BseBI	CCWGG	2 cut(s)	85, 276
BseDI	CCNNGG	2 cut(s)	108, 176
BseGI	GGATG	2 cut(s)	37, 123
BseLI	CCNNNNNNNGG	2 cut(s)	90, 182
BseNI	ACTGG	1 cut(s)	135
BseYI	CCCAGC	1 cut(s)	71
BshFI	GGCC	2 cut(s)	107, 116
BsiSI	CCGG	1 cut(s)	59
BslI	CCNNNNNNNGG	2 cut(s)	90, 182
BsmAI	GTCTC	2 cut(s)	128, 248
BsnI	GGCC	2 cut(s)	107, 116
Bso31I	GGTCTC	1 cut(s)	128
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	3 cut(s)	88, 96, 113
BspANI	GGCC	2 cut(s)	107, 116
BspTI	CTTAAG	1 cut(s)	146
BspTNI	GGTCTC	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	135
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	2 cut(s)	108, 176
BssT1I	CCWWGG	2 cut(s)	108, 176
Bst2UI	CCWGG	2 cut(s)	85, 276
Bst6I	CTCTTC	2 cut(s)	155, 246
BstAFI	CTTAAG	1 cut(s)	146
BstDEI	CTNAG	1 cut(s)	406
BstDSI	CCRYGG	1 cut(s)	108
BstEII	GGTNACC	1 cut(s)	79
BstF5I	GGATG	2 cut(s)	37, 123
BstMAI	GTCTC	2 cut(s)	128, 248
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	2 cut(s)	85, 276
BstPI	GGTNACC	1 cut(s)	79
BstSCI	CCNGG	2 cut(s)	83, 274
BstXI	CCANNNNNNTGG	1 cut(s)	130
BsuI	GTATCC	1 cut(s)	282
BsuRI	GGCC	2 cut(s)	107, 116
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	2 cut(s)	37, 123
BtsIMutI	CAGTG	1 cut(s)	128
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	3 cut(s)	109, 182, 286
CviJI	RGCY	9 cut(s)	11, 58, 71, 107, 116, 215, 246, 284, 403
CviKI_1	RGCY	9 cut(s)	11, 58, 71, 107, 116, 215, 246, 284, 403
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	1 cut(s)	406
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	2 cut(s)	155, 246
EarI	CTCTTC	2 cut(s)	155, 246
Eco130I	CCWWGG	2 cut(s)	108, 176
Eco31I	GGTCTC	1 cut(s)	128
Eco91I	GGTNACC	1 cut(s)	79
EcoO65I	GGTNACC	1 cut(s)	79
EcoRII	CCWGG	2 cut(s)	83, 274
EcoT14I	CCWWGG	2 cut(s)	108, 176
ErhI	CCWWGG	2 cut(s)	108, 176
FaeI	CATG	3 cut(s)	112, 185, 289
FaiI	YATR	8 cut(s)	40, 110, 155, 183, 287, 296, 347, 400
FalI	AAGNNNNNCTT	4 cut(s)	160, 192, 322, 354
FatI	CATG	3 cut(s)	108, 181, 285
FauI	CCCGC	1 cut(s)	89
Fnu4HI	GCNGC	1 cut(s)	114
FokI	GGATG	2 cut(s)	44, 110
Fsp4HI	GCNGC	1 cut(s)	114
GluI	GCNGC	1 cut(s)	114
GsaI	CCCAGC	1 cut(s)	75
GsuI	CTGGAG	1 cut(s)	152
HaeIII	GGCC	2 cut(s)	107, 116
HapII	CCGG	1 cut(s)	59
Hin1II	CATG	3 cut(s)	112, 185, 289
HindIII	AAGCTT	1 cut(s)	213
HinfI	GANTC	2 cut(s)	208, 291
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	2 cut(s)	197, 206
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188I	TCNGA	2 cut(s)	352, 409
Hpy188III	TCNNGA	1 cut(s)	168
Hpy8I	GTNNAC	1 cut(s)	26
HpyAV	CCTTC	1 cut(s)	185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	1 cut(s)	406
Hsp92II	CATG	3 cut(s)	112, 185, 289
LpnPI	CCDG	9 cut(s)	14, 57, 70, 72, 97, 116, 261, 288, 314
MaeIII	GTNAC	3 cut(s)	79, 185, 194
MboII	GAAGA	3 cut(s)	172, 244, 263
MnlI	CCTC	2 cut(s)	69, 195
MseI	TTAA	5 cut(s)	147, 240, 342, 372, 412
MslI	CAYNNNNRTG	1 cut(s)	397
MspCI	CTTAAG	1 cut(s)	146
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	2 cut(s)	85, 276
MvaI	CCWGG	2 cut(s)	85, 276
MwoI	GCNNNNNNNGC	1 cut(s)	113
NcoI	CCATGG	1 cut(s)	108
NlaIII	CATG	3 cut(s)	112, 185, 289
NmuCI	GTSAC	2 cut(s)	185, 194
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	208, 291
PflMI	CCANNNNNTGG	1 cut(s)	90
PfoI	TCCNGGA	1 cut(s)	274
PkrI	GCNGC	1 cut(s)	115
Psp6I	CCWGG	2 cut(s)	83, 274
PspEI	GGTNACC	1 cut(s)	79
PspFI	CCCAGC	1 cut(s)	71
PspGI	CCWGG	2 cut(s)	83, 274
PspPI	GGNCC	1 cut(s)	105
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
RseI	CAYNNNNRTG	1 cut(s)	397
SaqAI	TTAA	5 cut(s)	147, 240, 342, 372, 412
SatI	GCNGC	1 cut(s)	114
Sau96I	GGNCC	1 cut(s)	105
ScrFI	CCNGG	2 cut(s)	85, 276
SetI	ASST	6 cut(s)	13, 73, 178, 196, 206, 217
SfiI	GGCCNNNNNGGCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	397
SmlI	CTYRAG	2 cut(s)	146, 387
SmoI	CTYRAG	2 cut(s)	146, 387
SsiI	CCGC	3 cut(s)	88, 96, 113
SspI	AATATT	1 cut(s)	361
StyD4I	CCNGG	2 cut(s)	83, 274
StyI	CCWWGG	2 cut(s)	108, 176
TaqI	TCGA	2 cut(s)	67, 380
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	2 cut(s)	208, 291
Tru1I	TTAA	5 cut(s)	147, 240, 342, 372, 412
Tru9I	TTAA	5 cut(s)	147, 240, 342, 372, 412
TscAI	CASTG	1 cut(s)	135
TseFI	GTSAC	2 cut(s)	185, 194
Tsp45I	GTSAC	2 cut(s)	185, 194
TspDTI	ATGAA	4 cut(s)	48, 173, 283, 358
TspRI	CASTG	1 cut(s)	135
Van91I	CCANNNNNTGG	1 cut(s)	90
Vha464I	CTTAAG	1 cut(s)	146
XcmI	CCANNNNNNNNNTGG	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.