Rmu_sc0004303.1_g000006

Long chain base biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004303.1
OG0001200
Physical Location & Seq
Reverse (-)
24656 .. 30288
5633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004303.1_g000006.1.cds

Sequence Viewer

Length: 837 bp
atgaaaacacgaagctggaatggtgcaagaatttctcctcaaaatcgttcccagaaagctgattctgaaactgcagttttctgctttgcagcaactgttttacacaacatattccgtggacttccctttcagctcccgaggagactaggaccgaagcaagttgacagagggtttggtggcactgacatgcggttcttgtggagactaggattagagtgtgatcattggtgtgtgattgtggtggtggggaacgacttctgcttgttccctagcggcgacagtgttggggtccaagtgttgcggcggtgcgatatgcttggaggtatgatggtggcggtgcaagagctgaagactaagatgcaaagttcaggaatgccttggcctggtgatgagggtgaacaacgatgggaacaagcatggttggctataaaaaagggatttgggtatttgtttctggtggctgcagaatatttggttcagggcgatgggctacgggatggagtccattggggaatacaaaatggtcttcatctttctagaagcacaattgtgtatttcaagcataatgacatggaatcattaaggaatactctggaggaaatcactctgaagaataagcgggctaagaaactccttagctatattgcggttgaagctgtgtaccaggttgaaaagatagatataattactgctgcaatgggacacgccttagccgcagaaggaggattctgcactggaagtgctagagttactgataccagagcgggtccttctccaattgcgtctccacgtaggcacgtcatgagcccaaattggggttccctgtattgccattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002178 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010154 GO:0010506 GO:0010508 GO:0010941 GO:0012505 GO:0016020 GO:0016049 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0035339 GO:0040007 GO:0042175 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

278

Amino Acids

31.03

Weight (kDa)

9.1

Isoelectric Point (pI)

53.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 764
AciI CCGC 9 cut(s) 190, 273, 301, 304, 335, 619, 647, 714, 764
AcsI RAATTY 1 cut(s) 30
AcuI CTGAAG 2 cut(s) 368, 629
AfaI GTAC 1 cut(s) 662
AfiI CCNNNNNNNGG 3 cut(s) 383, 814, 815
AgsI TTSAA 3 cut(s) 559, 653, 671
AjiI CACGTC 1 cut(s) 799
AjnI CCWGG 2 cut(s) 382, 663
AjuI GAANNNNNNNTTGG 2 cut(s) 802, 834
AleI CACNNNNGTG 1 cut(s) 548
AluBI AGCT 6 cut(s) 15, 59, 133, 346, 639, 656
AluI AGCT 6 cut(s) 15, 59, 133, 346, 639, 656
Alw26I GTCTC 3 cut(s) 136, 196, 789
AlwNI CAGNNNCTG 1 cut(s) 95
Ama87I CYCGRG 1 cut(s) 136
AoxI GGCC 1 cut(s) 380
ApeKI GCWGC 3 cut(s) 89, 461, 692
ApoI RAATTY 1 cut(s) 30
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
Asp700I GAANNNNTTC 1 cut(s) 254
AspS9I GGNCC 3 cut(s) 149, 289, 767
AsuHPI GGTGA 2 cut(s) 398, 407
AvaI CYCGRG 1 cut(s) 136
AvaII GGWCC 3 cut(s) 149, 289, 767
BanII GRGCYC 1 cut(s) 809
BbsI GAAGAC 2 cut(s) 356, 518
BbvI GCAGC 3 cut(s) 101, 448, 679
BccI CCATC 4 cut(s) 322, 399, 479, 491
BciT130I CCWGG 2 cut(s) 384, 665
BclI TGATCA 1 cut(s) 220
BcoDI GTCTC 3 cut(s) 136, 196, 789
BfaI CTAG 5 cut(s) 146, 206, 270, 537, 744
BfmI CTRYAG 2 cut(s) 72, 462
BisI GCNGC 6 cut(s) 90, 274, 302, 462, 693, 714
BlsI GCNGC 6 cut(s) 91, 275, 303, 463, 694, 715
Bme1390I CCNGG 2 cut(s) 384, 665
Bme18I GGWCC 3 cut(s) 149, 289, 767
BmeT110I CYCGRG 1 cut(s) 136
BmgBI CACGTC 1 cut(s) 799
BmgT120I GGNCC 3 cut(s) 149, 289, 767
BmiI GGNNCC 3 cut(s) 290, 768, 820
BmrFI CCNGG 2 cut(s) 384, 665
BmsI GCATC 1 cut(s) 348
BpiI GAAGAC 2 cut(s) 356, 518
BpmI CTGGAG 1 cut(s) 614
Bpu10I CCTNAGC 2 cut(s) 635, 709
BsaAI YACGTR 1 cut(s) 791
BsaJI CCNNGG 3 cut(s) 115, 137, 377
Bsc4I CCNNNNNNNGG 3 cut(s) 383, 814, 815
Bse1I ACTGG 1 cut(s) 739
Bse3DI GCAATG 1 cut(s) 702
BseBI CCWGG 2 cut(s) 384, 665
BseDI CCNNGG 3 cut(s) 115, 137, 377
BseGI GGATG 1 cut(s) 502
BseLI CCNNNNNNNGG 3 cut(s) 383, 814, 815
BseMI GCAATG 1 cut(s) 702
BseNI ACTGG 1 cut(s) 739
BseRI GAGGAG 2 cut(s) 27, 154
BseXI GCAGC 3 cut(s) 101, 448, 679
BsgI GTGCAG 1 cut(s) 715
BshFI GGCC 1 cut(s) 382
BsiHKCI CYCGRG 1 cut(s) 136
BslFI GGGAC 1 cut(s) 714
BslI CCNNNNNNNGG 3 cut(s) 383, 814, 815
BsmAI GTCTC 3 cut(s) 136, 196, 789
BsmBI CGTCTC 1 cut(s) 789
BsmFI GGGAC 1 cut(s) 714
BsmI GAATGC 1 cut(s) 378
BsnI GGCC 1 cut(s) 382
BsoBI CYCGRG 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 809
Bsp143I GATC 1 cut(s) 220
BspACI CCGC 9 cut(s) 190, 273, 301, 304, 335, 619, 647, 714, 764
BspANI GGCC 1 cut(s) 382
BspHI TCATGA 1 cut(s) 801
BspLI GGNNCC 3 cut(s) 290, 768, 820
BspMAI CTGCAG 2 cut(s) 76, 466
BsrBI CCGCTC 1 cut(s) 764
BsrDI GCAATG 1 cut(s) 702
BsrI ACTGG 1 cut(s) 739
BssECI CCNNGG 3 cut(s) 115, 137, 377
BssMI GATC 1 cut(s) 220
BssT1I CCWWGG 1 cut(s) 377
Bst2UI CCWGG 2 cut(s) 384, 665
Bst4CI ACNGT 2 cut(s) 97, 281
BstBAI YACGTR 1 cut(s) 791
BstC8I GCNNGC 1 cut(s) 621
BstDEI CTNAG 4 cut(s) 354, 624, 635, 709
BstDSI CCRYGG 1 cut(s) 115
BstF5I GGATG 1 cut(s) 502
BstKTI GATC 1 cut(s) 223
BstMAI GTCTC 3 cut(s) 136, 196, 789
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 3 cut(s) 422, 653, 713
BstNI CCWGG 2 cut(s) 384, 665
BstNSI RCATGY 1 cut(s) 190
BstSCI CCNGG 2 cut(s) 382, 663
BstSFI CTRYAG 2 cut(s) 72, 462
BstV1I GCAGC 3 cut(s) 101, 448, 679
BstV2I GAAGAC 2 cut(s) 356, 518
BsuRI GGCC 1 cut(s) 382
BtgI CCRYGG 1 cut(s) 115
BtgZI GCGATG 1 cut(s) 498
BtrI CACGTC 1 cut(s) 799
BtsCI GGATG 1 cut(s) 502
BtsIMutI CAGTG 3 cut(s) 180, 286, 732
Cac8I GCNNGC 1 cut(s) 621
CaiI CAGNNNCTG 1 cut(s) 95
CciI TCATGA 1 cut(s) 801
Cfr13I GGNCC 3 cut(s) 149, 289, 767
CseI GACGC 1 cut(s) 771
CsiI ACCWGGT 1 cut(s) 663
Csp6I GTAC 1 cut(s) 661
CviAII CATG 4 cut(s) 187, 417, 571, 802
CviQI GTAC 1 cut(s) 661
DdeI CTNAG 4 cut(s) 354, 624, 635, 709
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 377
Eco24I GRGCYC 1 cut(s) 809
Eco47I GGWCC 3 cut(s) 149, 289, 767
Eco57I CTGAAG 2 cut(s) 368, 629
Eco88I CYCGRG 1 cut(s) 136
EcoO109I RGGNCCY 1 cut(s) 767
EcoRII CCWGG 2 cut(s) 382, 663
EcoT14I CCWWGG 1 cut(s) 377
EcoT38I GRGCYC 1 cut(s) 809
ErhI CCWWGG 1 cut(s) 377
Esp3I CGTCTC 1 cut(s) 789
FaeI CATG 4 cut(s) 190, 420, 574, 805
FaqI GGGAC 1 cut(s) 714
FatI CATG 4 cut(s) 186, 416, 570, 801
FauI CCCGC 2 cut(s) 612, 757
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 6 cut(s) 90, 274, 302, 462, 693, 714
FokI GGATG 1 cut(s) 509
FriOI GRGCYC 1 cut(s) 809
Fsp4HI GCNGC 6 cut(s) 90, 274, 302, 462, 693, 714
FspBI CTAG 5 cut(s) 146, 206, 270, 537, 744
GluI GCNGC 6 cut(s) 90, 274, 302, 462, 693, 714
GsuI CTGGAG 1 cut(s) 614
HaeIII GGCC 1 cut(s) 382
HgaI GACGC 1 cut(s) 771
Hin1II CATG 4 cut(s) 190, 420, 574, 805
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 4 cut(s) 62, 501, 575, 726
HphI GGTGA 2 cut(s) 398, 407
Hpy166II GTNNAC 4 cut(s) 119, 163, 398, 661
Hpy188I TCNGA 2 cut(s) 67, 609
Hpy188III TCNNGA 5 cut(s) 136, 369, 537, 593, 802
Hpy8I GTNNAC 4 cut(s) 119, 163, 398, 661
HpyAV CCTTC 2 cut(s) 713, 780
HpyCH4III ACNGT 2 cut(s) 97, 281
HpyCH4IV ACGT 2 cut(s) 790, 798
HpyCH4V TGCA 8 cut(s) 26, 74, 89, 340, 361, 464, 695, 732
HpyF10VI GCNNNNNNNGC 3 cut(s) 422, 653, 713
HpyF3I CTNAG 4 cut(s) 354, 624, 635, 709
HpySE526I ACGT 2 cut(s) 790, 798
Hsp92II CATG 4 cut(s) 190, 420, 574, 805
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 1 cut(s) 220
LmnI GCTCC 1 cut(s) 138
Lsp1109I GCAGC 3 cut(s) 101, 448, 679
LweI GCATC 1 cut(s) 348
MabI ACCWGGT 1 cut(s) 663
MaeI CTAG 5 cut(s) 146, 206, 270, 537, 744
MaeII ACGT 2 cut(s) 790, 798
MaeIII GTNAC 1 cut(s) 748
MalI GATC 1 cut(s) 222
MbiI CCGCTC 1 cut(s) 764
MboI GATC 1 cut(s) 220
MboII GAAGA 3 cut(s) 361, 518, 622
MfeI CAATTG 2 cut(s) 546, 777
MhlI GDGCHC 1 cut(s) 809
MluCI AATT 5 cut(s) 30, 546, 684, 777, 811
MlyI GAGTC 1 cut(s) 510
MnlI CCTC 7 cut(s) 48, 132, 161, 314, 385, 589, 716
MroXI GAANNNNTTC 1 cut(s) 254
MseI TTAA 1 cut(s) 581
MslI CAYNNNNRTG 3 cut(s) 185, 228, 548
MspR9I CCNGG 2 cut(s) 384, 665
MunI CAATTG 2 cut(s) 546, 777
Mva1269I GAATGC 1 cut(s) 378
MvaI CCWGG 2 cut(s) 384, 665
MwoI GCNNNNNNNGC 3 cut(s) 422, 653, 713
NdeII GATC 1 cut(s) 220
NlaIII CATG 4 cut(s) 190, 420, 574, 805
NlaIV GGNNCC 3 cut(s) 290, 768, 820
NspI RCATGY 1 cut(s) 190
OliI CACNNNNGTG 1 cut(s) 548
PagI TCATGA 1 cut(s) 801
PctI GAATGC 1 cut(s) 378
PdmI GAANNNNTTC 1 cut(s) 254
PfeI GAWTC 3 cut(s) 62, 575, 726
PkrI GCNGC 6 cut(s) 91, 275, 303, 463, 694, 715
PleI GAGTC 1 cut(s) 509
PpsI GAGTC 1 cut(s) 509
Ppu21I YACGTR 1 cut(s) 791
PpuMI RGGWCCY 1 cut(s) 767
Psp5II RGGWCCY 1 cut(s) 767
Psp6I CCWGG 2 cut(s) 382, 663
PspGI CCWGG 2 cut(s) 382, 663
PspN4I GGNNCC 3 cut(s) 290, 768, 820
PspPI GGNCC 3 cut(s) 149, 289, 767
PspPPI RGGWCCY 1 cut(s) 767
PstI CTGCAG 2 cut(s) 76, 466
PstNI CAGNNNCTG 1 cut(s) 95
RsaI GTAC 1 cut(s) 662
RsaNI GTAC 1 cut(s) 661
RseI CAYNNNNRTG 3 cut(s) 185, 228, 548
SaqAI TTAA 1 cut(s) 581
SatI GCNGC 6 cut(s) 90, 274, 302, 462, 693, 714
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 3 cut(s) 149, 289, 767
SchI GAGTC 1 cut(s) 510
ScrFI CCNGG 2 cut(s) 384, 665
SduI GDGCHC 1 cut(s) 809
SexAI ACCWGGT 1 cut(s) 663
SfaNI GCATC 1 cut(s) 348
SfcI CTRYAG 2 cut(s) 72, 462
SinI GGWCC 3 cut(s) 149, 289, 767
SmiMI CAYNNNNRTG 3 cut(s) 185, 228, 548
Sse9I AATT 5 cut(s) 30, 546, 684, 777, 811
SsiI CCGC 9 cut(s) 190, 273, 301, 304, 335, 619, 647, 714, 764
SspI AATATT 1 cut(s) 470
SspMI CTAG 5 cut(s) 146, 206, 270, 537, 744
StyD4I CCNGG 2 cut(s) 382, 663
StyI CCWWGG 1 cut(s) 377
TaaI ACNGT 2 cut(s) 97, 281
TaiI ACGT 2 cut(s) 793, 801
TaqII GACCGA 1 cut(s) 166
TasI AATT 5 cut(s) 30, 546, 684, 777, 811
TauI GCSGC 3 cut(s) 276, 304, 716
TfiI GAWTC 3 cut(s) 62, 575, 726
Tru1I TTAA 1 cut(s) 581
Tru9I TTAA 1 cut(s) 581
TscAI CASTG 3 cut(s) 187, 286, 739
TseI GCWGC 3 cut(s) 89, 461, 692
TspDTI ATGAA 2 cut(s) 17, 518
TspGWI ACGGA 1 cut(s) 104
TspRI CASTG 3 cut(s) 187, 286, 739
VpaK11BI GGWCC 3 cut(s) 149, 289, 767
XapI RAATTY 1 cut(s) 30
XbaI TCTAGA 1 cut(s) 536
XceI RCATGY 1 cut(s) 190
XmnI GAANNNNTTC 1 cut(s) 254
XspI CTAG 5 cut(s) 146, 206, 270, 537, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.