Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Forward (+)

20924587 .. 20928808

Gene Structure 4222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0119600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCACGTTACCGATCGGCGTCACCCTCCGGCGGTCTCCCTCGCCAGCAGAAGCACGATCCTCCTGCTCTCACCGAGGAAATGTTTGAACTTCTGATCCAAGCTCAGAACAACCAAGTGAACCAACCTGCGCCGGTTGCCGGAATTGAACGCTATGAACCCGACGACCGTGACATGATTCCAGGATACCGCTCTGAGTCGCCGGACAGTTTTCCACCTCTGGTACGACGACATCTGACGCCGGACCCACTGGTTCCGGAGGACCACATTCCCCACAACGACAACCAGTACGCTGACGACGATCAATCGAAGGTCAATGCAGCTAGGAAAGCAGGAGCTCATGGTGTAATGGTTAATCTGCTCTATGATGTACGATTTCTTTATGGGAAATGGTTGCCATGTGACATCATATCAAGCTATCATCAGCCCCTTCAAGTATGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009631 GO:0009941 GO:0009987 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016781 GO:0031967 GO:0031975 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050521 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPDK_N

Protein Analysis

148

Amino Acids

16.77

Weight (kDa)

5.4

Isoelectric Point (pI)

66.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	136
AccBSI	CCGCTC	1 cut(s)	192
AccIII	TCCGGA	1 cut(s)	256
AciI	CCGC	2 cut(s)	33, 190
AclWI	GGATC	2 cut(s)	53, 91
AcyI	GRCGYC	2 cut(s)	20, 239
AfaI	GTAC	3 cut(s)	225, 290, 372
AfiI	CCNNNNNNNGG	2 cut(s)	32, 140
AgsI	TTSAA	3 cut(s)	89, 149, 434
AjnI	CCWGG	1 cut(s)	181
AloI	GAACNNNNNNTCC	2 cut(s)	81, 113
AluBI	AGCT	4 cut(s)	104, 323, 338, 417
AluI	AGCT	4 cut(s)	104, 323, 338, 417
Alw21I	GWGCWC	1 cut(s)	340
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	2 cut(s)	53, 91
Aor13HI	TCCGGA	1 cut(s)	256
ApeKI	GCWGC	1 cut(s)	320
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	2 cut(s)	244, 262
AsuHPI	GGTGA	2 cut(s)	15, 64
AvaII	GGWCC	2 cut(s)	244, 262
BanII	GRGCYC	1 cut(s)	340
Bbv12I	GWGCWC	1 cut(s)	340
BbvI	GCAGC	1 cut(s)	332
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BciT130I	CCWGG	1 cut(s)	183
BciVI	GTATCC	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	136
BfuI	GTATCC	1 cut(s)	179
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	2 cut(s)	244, 262
BmgT120I	GGNCC	2 cut(s)	244, 262
BmiI	GGNNCC	2 cut(s)	246, 255
BmrFI	CCNGG	1 cut(s)	183
BsaHI	GRCGYC	2 cut(s)	20, 239
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 140
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	2 cut(s)	255, 286
BseAI	TCCGGA	1 cut(s)	256
BseBI	CCWGG	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	75
BseLI	CCNNNNNNNGG	2 cut(s)	32, 140
BseMII	CTCAG	2 cut(s)	119, 186
BseNI	ACTGG	2 cut(s)	255, 286
BseXI	GCAGC	1 cut(s)	332
Bsh1285I	CGRYCG	2 cut(s)	17, 169
BsiEI	CGRYCG	2 cut(s)	17, 169
BsiHKAI	GWGCWC	1 cut(s)	340
BsiSI	CCGG	6 cut(s)	30, 134, 141, 203, 242, 257
BslI	CCNNNNNNNGG	2 cut(s)	32, 140
BsmAI	GTCTC	1 cut(s)	41
Bso31I	GGTCTC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp13I	TCCGGA	1 cut(s)	256
Bsp143I	GATC	4 cut(s)	14, 58, 96, 301
BspACI	CCGC	2 cut(s)	33, 190
BspCNI	CTCAG	2 cut(s)	118, 187
BspEI	TCCGGA	1 cut(s)	256
BspLI	GGNNCC	2 cut(s)	246, 255
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	2 cut(s)	53, 91
BspTNI	GGTCTC	1 cut(s)	41
BsrBI	CCGCTC	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	2 cut(s)	255, 286
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	4 cut(s)	14, 58, 96, 301
BssNI	GRCGYC	2 cut(s)	20, 239
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	2 cut(s)	170, 209
BstACI	GRCGYC	2 cut(s)	20, 239
BstC8I	GCNNGC	1 cut(s)	47
BstDEI	CTNAG	2 cut(s)	105, 195
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	4 cut(s)	17, 61, 99, 304
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	4 cut(s)	14, 58, 96, 301
BstMCI	CGRYCG	2 cut(s)	17, 169
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 329
BstNI	CCWGG	1 cut(s)	183
BstNSI	RCATGY	1 cut(s)	445
BstSCI	CCNGG	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	332
BsuI	GTATCC	1 cut(s)	179
BtsIMutI	CAGTG	1 cut(s)	248
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	47
CfoI	GCGC	1 cut(s)	133
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	244, 262
CseI	GACGC	2 cut(s)	9, 247
Csp6I	GTAC	3 cut(s)	224, 289, 371
CviAII	CATG	4 cut(s)	175, 341, 399, 442
CviJI	RGCY	5 cut(s)	104, 323, 338, 417, 427
CviKI_1	RGCY	5 cut(s)	104, 323, 338, 417, 427
CviQI	GTAC	3 cut(s)	224, 289, 371
DdeI	CTNAG	2 cut(s)	105, 195
DpnI	GATC	4 cut(s)	16, 60, 98, 303
DpnII	GATC	4 cut(s)	14, 58, 96, 301
Ecl136II	GAGCTC	1 cut(s)	338
Eco24I	GRGCYC	1 cut(s)	340
Eco31I	GGTCTC	1 cut(s)	41
Eco47I	GGWCC	2 cut(s)	244, 262
Eco53kI	GAGCTC	1 cut(s)	338
EcoICRI	GAGCTC	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	181
EcoT22I	ATGCAT	1 cut(s)	443
EcoT38I	GRGCYC	1 cut(s)	340
FaeI	CATG	4 cut(s)	178, 344, 402, 445
FaiI	YATR	9 cut(s)	156, 176, 342, 366, 384, 400, 410, 439, 443
FatI	CATG	4 cut(s)	174, 340, 398, 441
Fnu4HI	GCNGC	1 cut(s)	321
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	1 cut(s)	321
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	1 cut(s)	321
HapII	CCGG	6 cut(s)	30, 134, 141, 203, 242, 257
HgaI	GACGC	2 cut(s)	9, 247
HhaI	GCGC	1 cut(s)	133
Hin1I	GRCGYC	2 cut(s)	20, 239
Hin1II	CATG	4 cut(s)	178, 344, 402, 445
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HinfI	GANTC	2 cut(s)	178, 197
HpaII	CCGG	6 cut(s)	30, 134, 141, 203, 242, 257
HphI	GGTGA	2 cut(s)	15, 64
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	4 cut(s)	96, 108, 196, 237
Hpy188III	TCNNGA	1 cut(s)	257
Hpy8I	GTNNAC	1 cut(s)	121
Hpy99I	CGWCG	3 cut(s)	167, 231, 302
HpyAV	CCTTC	2 cut(s)	304, 440
HpyCH4III	ACNGT	2 cut(s)	170, 209
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	2 cut(s)	320, 441
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 329
HpyF3I	CTNAG	2 cut(s)	105, 195
HpySE526I	ACGT	1 cut(s)	7
Hsp92I	GRCGYC	2 cut(s)	20, 239
Hsp92II	CATG	4 cut(s)	178, 344, 402, 445
HspAI	GCGC	1 cut(s)	131
Kpn2I	TCCGGA	1 cut(s)	256
Kzo9I	GATC	4 cut(s)	14, 58, 96, 301
LmnI	GCTCC	1 cut(s)	335
Lsp1109I	GCAGC	1 cut(s)	332
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	4 cut(s)	8, 21, 170, 401
MalI	GATC	4 cut(s)	16, 60, 98, 303
MbiI	CCGCTC	1 cut(s)	192
MboI	GATC	4 cut(s)	14, 58, 96, 301
MhlI	GDGCHC	1 cut(s)	340
MluCI	AATT	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	6 cut(s)	37, 51, 70, 72, 228, 253
Mph1103I	ATGCAT	1 cut(s)	443
MroI	TCCGGA	1 cut(s)	256
MseI	TTAA	1 cut(s)	354
MspI	CCGG	6 cut(s)	30, 134, 141, 203, 242, 257
MspR9I	CCNGG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	2 cut(s)	137, 329
NdeII	GATC	4 cut(s)	14, 58, 96, 301
NlaIII	CATG	4 cut(s)	178, 344, 402, 445
NlaIV	GGNNCC	2 cut(s)	246, 255
NmuCI	GTSAC	3 cut(s)	21, 170, 401
NsiI	ATGCAT	1 cut(s)	443
NspI	RCATGY	1 cut(s)	445
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	178
PfoI	TCCNGGA	1 cut(s)	181
PkrI	GCNGC	1 cut(s)	322
Ple19I	CGATCG	1 cut(s)	17
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
Psp124BI	GAGCTC	1 cut(s)	340
Psp6I	CCWGG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	246, 255
PspPI	GGNCC	2 cut(s)	244, 262
PvuI	CGATCG	1 cut(s)	17
RsaI	GTAC	3 cut(s)	225, 290, 372
RsaNI	GTAC	3 cut(s)	224, 289, 371
SacI	GAGCTC	1 cut(s)	340
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	4 cut(s)	14, 58, 96, 301
Sau96I	GGNCC	2 cut(s)	244, 262
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	1 cut(s)	340
SetI	ASST	8 cut(s)	10, 106, 130, 220, 315, 325, 340, 419
SinI	GGWCC	2 cut(s)	244, 262
Sse9I	AATT	1 cut(s)	144
SsiI	CCGC	2 cut(s)	33, 190
SspMI	CTAG	1 cut(s)	324
SstI	GAGCTC	1 cut(s)	340
StyD4I	CCNGG	1 cut(s)	181
TaaI	ACNGT	2 cut(s)	170, 209
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	1 cut(s)	308
TasI	AATT	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	1 cut(s)	255
TseFI	GTSAC	3 cut(s)	21, 170, 401
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	3 cut(s)	21, 170, 401
TspDTI	ATGAA	1 cut(s)	171
TspRI	CASTG	1 cut(s)	255
VpaK11BI	GGWCC	2 cut(s)	244, 262
XceI	RCATGY	1 cut(s)	445
XspI	CTAG	1 cut(s)	324
Zsp2I	ATGCAT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.