Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000974.1

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Reverse (-)

70270 .. 73254

Gene Structure 2985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000974.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgcaaagttcaggaatgccttggcctggtgatgagggtgaacaacgatgggaacaagcatggttggctataaaaaatgtaagaatgcttggctgcatatgcccatttgaacttgttcttaaatccattaatgctaggaatttaactgcacttgatattgaaataataaatgccgactatgcattcgttattcacacaactaacccatcttcaggagactcgtcggagatatatgccgaggttgtcaaaggtcttggaaaaaccttagttggagtttatcctggacgtgacttaagttttattagcaagaaaaatgctctggactctcctcaggtgttaggttaccctagcaaaccggttggcctctttatcagacggtccataatcttccgattcgattcgaatggtgaagatcttgaaggttatgctgtagtgatgacccaattcctcacctggaaacgccagaaggatgatgatgcatctgccacaagagctgaagcagcgaggaaacaggcaaatgacatagctgttgggacagtgcaaatgaatggtcgagagcttttcgcacatcaaccttggatttttgataacactctttattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009631 GO:0009941 GO:0009987 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016781 GO:0031967 GO:0031975 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050521 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPDK_N

Protein Analysis

200

Amino Acids

22.35

Weight (kDa)

5.46

Isoelectric Point (pI)

43.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	2 cut(s)	195, 516
AfiI	CCNNNNNNNGG	2 cut(s)	26, 212
AflII	CTTAAG	1 cut(s)	292
AgeI	ACCGGT	1 cut(s)	355
AgsI	TTSAA	3 cut(s)	110, 161, 419
AjiI	CACGTC	1 cut(s)	287
AjnI	CCWGG	3 cut(s)	25, 280, 452
AluBI	AGCT	3 cut(s)	494, 527, 559
AluI	AGCT	3 cut(s)	494, 527, 559
Alw26I	GTCTC	1 cut(s)	210
AoxI	GGCC	2 cut(s)	23, 361
ApeKI	GCWGC	2 cut(s)	93, 500
ApoI	RAATTY	1 cut(s)	139
ArsI	GACNNNNNNTTYG	4 cut(s)	167, 199, 535, 567
AseI	ATTAAT	1 cut(s)	129
AsiGI	ACCGGT	1 cut(s)	355
Asp700I	GAANNNNTTC	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	378
AsuHPI	GGTGA	4 cut(s)	41, 50, 419, 442
AsuII	TTCGAA	1 cut(s)	401
AvaII	GGWCC	1 cut(s)	378
AxyI	CCTNAGG	1 cut(s)	330
BbvI	GCAGC	2 cut(s)	80, 512
BccI	CCATC	2 cut(s)	42, 214
BciT130I	CCWGG	3 cut(s)	27, 282, 454
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	2 cut(s)	135, 348
BfmI	CTRYAG	1 cut(s)	429
BfrI	CTTAAG	1 cut(s)	292
BglII	AGATCT	1 cut(s)	412
BisI	GCNGC	2 cut(s)	94, 501
BlsI	GCNGC	2 cut(s)	95, 502
Bme1390I	CCNGG	3 cut(s)	27, 282, 454
Bme18I	GGWCC	1 cut(s)	378
BmgBI	CACGTC	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	378
BmrFI	CCNGG	3 cut(s)	27, 282, 454
BmsI	GCATC	2 cut(s)	466, 488
Bpu14I	TTCGAA	1 cut(s)	401
BsaJI	CCNNGG	3 cut(s)	20, 237, 575
BsaWI	WCCGGW	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 212
Bse118I	RCCGGY	1 cut(s)	355
Bse21I	CCTNAGG	1 cut(s)	330
BseBI	CCWGG	3 cut(s)	27, 282, 454
BseDI	CCNNGG	3 cut(s)	20, 237, 575
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	2 cut(s)	26, 212
BseMII	CTCAG	1 cut(s)	344
BseRI	GAGGAG	1 cut(s)	318
BseXI	GCAGC	2 cut(s)	80, 512
BsgI	GTGCAG	1 cut(s)	132
BshFI	GGCC	2 cut(s)	25, 363
BshTI	ACCGGT	1 cut(s)	355
BsiSI	CCGG	1 cut(s)	356
BslFI	GGGAC	1 cut(s)	547
BslI	CCNNNNNNNGG	2 cut(s)	26, 212
BsmAI	GTCTC	1 cut(s)	210
BsmFI	GGGAC	1 cut(s)	547
BsmI	GAATGC	3 cut(s)	21, 90, 182
BsnI	GGCC	2 cut(s)	25, 363
Bsp119I	TTCGAA	1 cut(s)	401
Bsp143I	GATC	1 cut(s)	412
BspANI	GGCC	2 cut(s)	25, 363
BspCNI	CTCAG	1 cut(s)	343
BspT104I	TTCGAA	1 cut(s)	401
BspTI	CTTAAG	1 cut(s)	292
BsrFI	RCCGGY	1 cut(s)	355
BssAI	RCCGGY	1 cut(s)	355
BssECI	CCNNGG	3 cut(s)	20, 237, 575
BssMI	GATC	1 cut(s)	412
BssT1I	CCWWGG	2 cut(s)	20, 575
Bst2UI	CCWGG	3 cut(s)	27, 282, 454
Bst4CI	ACNGT	2 cut(s)	378, 538
BstAFI	CTTAAG	1 cut(s)	292
BstBI	TTCGAA	1 cut(s)	401
BstDEI	CTNAG	2 cut(s)	265, 330
BstEII	GGTNACC	1 cut(s)	341
BstF5I	GGATG	1 cut(s)	475
BstKTI	GATC	1 cut(s)	415
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	1 cut(s)	412
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 99, 179, 491, 500
BstNI	CCWGG	3 cut(s)	27, 282, 454
BstPI	GGTNACC	1 cut(s)	341
BstSCI	CCNGG	3 cut(s)	25, 280, 452
BstSFI	CTRYAG	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	80, 512
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
Bsu36I	CCTNAGG	1 cut(s)	330
BsuRI	GGCC	2 cut(s)	25, 363
BtrI	CACGTC	1 cut(s)	287
BtsCI	GGATG	1 cut(s)	475
BtsIMutI	CAGTG	1 cut(s)	543
Cfr10I	RCCGGY	1 cut(s)	355
Cfr13I	GGNCC	1 cut(s)	378
CspAI	ACCGGT	1 cut(s)	355
CviAII	CATG	1 cut(s)	60
CviJI	RGCY	7 cut(s)	25, 68, 93, 363, 494, 527, 559
CviKI_1	RGCY	7 cut(s)	25, 68, 93, 363, 494, 527, 559
DdeI	CTNAG	2 cut(s)	265, 330
DpnI	GATC	1 cut(s)	414
DpnII	GATC	1 cut(s)	412
Eco130I	CCWWGG	2 cut(s)	20, 575
Eco47I	GGWCC	1 cut(s)	378
Eco57I	CTGAAG	2 cut(s)	195, 516
Eco81I	CCTNAGG	1 cut(s)	330
Eco91I	GGTNACC	1 cut(s)	341
EcoO65I	GGTNACC	1 cut(s)	341
EcoRII	CCWGG	3 cut(s)	25, 280, 452
EcoT14I	CCWWGG	2 cut(s)	20, 575
EcoT22I	ATGCAT	2 cut(s)	184, 481
ErhI	CCWWGG	2 cut(s)	20, 575
FaeI	CATG	1 cut(s)	63
FaqI	GGGAC	1 cut(s)	547
FatI	CATG	1 cut(s)	59
FauNDI	CATATG	1 cut(s)	98
Fnu4HI	GCNGC	2 cut(s)	94, 501
FokI	GGATG	1 cut(s)	482
Fsp4HI	GCNGC	2 cut(s)	94, 501
FspBI	CTAG	2 cut(s)	135, 348
GluI	GCNGC	2 cut(s)	94, 501
HaeIII	GGCC	2 cut(s)	25, 363
HapII	CCGG	1 cut(s)	356
Hin1II	CATG	1 cut(s)	63
HinfI	GANTC	4 cut(s)	218, 323, 393, 398
HpaII	CCGG	1 cut(s)	356
HphI	GGTGA	4 cut(s)	41, 50, 419, 442
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	3 cut(s)	226, 374, 392
Hpy188III	TCNNGA	5 cut(s)	12, 213, 320, 416, 554
Hpy8I	GTNNAC	1 cut(s)	41
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	2 cut(s)	413, 460
HpyCH4III	ACNGT	2 cut(s)	378, 538
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	6 cut(s)	4, 96, 149, 182, 479, 541
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 99, 179, 491, 500
HpyF3I	CTNAG	2 cut(s)	265, 330
HpySE526I	ACGT	1 cut(s)	286
Hsp92II	CATG	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	412
Lsp1109I	GCAGC	2 cut(s)	80, 512
LweI	GCATC	2 cut(s)	466, 488
MaeI	CTAG	2 cut(s)	135, 348
MaeII	ACGT	1 cut(s)	286
MaeIII	GTNAC	2 cut(s)	287, 341
MalI	GATC	1 cut(s)	414
MboI	GATC	1 cut(s)	412
MboII	GAAGA	3 cut(s)	201, 379, 422
MflI	RGATCY	1 cut(s)	412
MluCI	AATT	2 cut(s)	139, 443
MlyI	GAGTC	2 cut(s)	212, 317
MmeI	TCCRAC	2 cut(s)	204, 250
MnlI	CCTC	6 cut(s)	28, 232, 339, 374, 458, 498
Mph1103I	ATGCAT	2 cut(s)	184, 481
MroXI	GAANNNNTTC	1 cut(s)	114
MseI	TTAA	4 cut(s)	120, 129, 143, 293
MspCI	CTTAAG	1 cut(s)	292
MspI	CCGG	1 cut(s)	356
MspR9I	CCNGG	3 cut(s)	27, 282, 454
Mva1269I	GAATGC	3 cut(s)	21, 90, 182
MvaI	CCWGG	3 cut(s)	27, 282, 454
MwoI	GCNNNNNNNGC	5 cut(s)	65, 99, 179, 491, 500
NdeI	CATATG	1 cut(s)	98
NdeII	GATC	1 cut(s)	412
NlaIII	CATG	1 cut(s)	63
NmeAIII	GCCGAG	1 cut(s)	262
NmuCI	GTSAC	1 cut(s)	287
NsiI	ATGCAT	2 cut(s)	184, 481
NspV	TTCGAA	1 cut(s)	401
PctI	GAATGC	3 cut(s)	21, 90, 182
PdmI	GAANNNNTTC	1 cut(s)	114
PfeI	GAWTC	2 cut(s)	393, 398
PfoI	TCCNGGA	1 cut(s)	280
PinAI	ACCGGT	1 cut(s)	355
PkrI	GCNGC	2 cut(s)	95, 502
PleI	GAGTC	2 cut(s)	212, 317
PpsI	GAGTC	2 cut(s)	212, 317
PshBI	ATTAAT	1 cut(s)	129
Psp6I	CCWGG	3 cut(s)	25, 280, 452
PspEI	GGTNACC	1 cut(s)	341
PspGI	CCWGG	3 cut(s)	25, 280, 452
PspPI	GGNCC	1 cut(s)	378
PsuI	RGATCY	1 cut(s)	412
SaqAI	TTAA	4 cut(s)	120, 129, 143, 293
SatI	GCNGC	2 cut(s)	94, 501
Sau3AI	GATC	1 cut(s)	412
Sau96I	GGNCC	1 cut(s)	378
SchI	GAGTC	2 cut(s)	212, 317
ScrFI	CCNGG	3 cut(s)	27, 282, 454
SfaNI	GCATC	2 cut(s)	466, 488
SfcI	CTRYAG	1 cut(s)	429
SfuI	TTCGAA	1 cut(s)	401
SinI	GGWCC	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	292
SmoI	CTYRAG	1 cut(s)	292
Sse9I	AATT	2 cut(s)	139, 443
SspMI	CTAG	2 cut(s)	135, 348
StyD4I	CCNGG	3 cut(s)	25, 280, 452
StyI	CCWWGG	2 cut(s)	20, 575
TaaI	ACNGT	2 cut(s)	378, 538
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	3 cut(s)	396, 401, 553
TasI	AATT	2 cut(s)	139, 443
TfiI	GAWTC	2 cut(s)	393, 398
Tru1I	TTAA	4 cut(s)	120, 129, 143, 293
Tru9I	TTAA	4 cut(s)	120, 129, 143, 293
TscAI	CASTG	1 cut(s)	543
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	2 cut(s)	93, 500
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	1 cut(s)	560
TspRI	CASTG	1 cut(s)	543
Vha464I	CTTAAG	1 cut(s)	292
VpaK11BI	GGWCC	1 cut(s)	378
VspI	ATTAAT	1 cut(s)	129
XapI	RAATTY	1 cut(s)	139
XmnI	GAANNNNTTC	1 cut(s)	114
XspI	CTAG	2 cut(s)	135, 348
Zsp2I	ATGCAT	2 cut(s)	184, 481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.