Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Forward (+)

46528598 .. 46529454

Gene Structure 857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG412700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAGCTTCATAACCCAGAAAGCCAATCTAAACTCTTCTATCGTAAGGAAACTTTTAATATATCAGATGACAATATTTGCTTCATTCACAAATCGACATCTCAAGCATGATTATGGCTTTCAGGTTAATTGTTATCCAAGCAAGCCAATAGGGCTGTATACCAAGCAGTCTGTCATATTCAGAACAGACTCGAATGCTAAGGTTCTGGAAGGATATGCAGGTGCTGGGCTTCATGACAGTGTAATTATGGATAAAGAGGAGAAGATTGTCTGGGATTACTCAAGCGATCGGATGATCTTTGATAGGGGCTTCCAAGTCTCACTCTTCTCAAGAATTGCAGACGTGGGGAAGATATTAGAAGGCCTTTATGGTTGTGTTGGACTACTTGAGTGGATCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2934 PPDK_N

Protein Analysis

133

Amino Acids

15.13

Weight (kDa)

8.53

Isoelectric Point (pI)

17.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	209
Acc36I	ACCTGC	1 cut(s)	209
AccI	GTMKAC	1 cut(s)	158
AclWI	GGATC	1 cut(s)	401
AjiI	CACGTC	1 cut(s)	343
AluBI	AGCT	1 cut(s)	6
AluI	AGCT	1 cut(s)	6
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	1 cut(s)	401
AlwNI	CAGNNNCTG	1 cut(s)	224
AoxI	GGCC	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	322
BfuAI	ACCTGC	1 cut(s)	209
BglI	GCCNNNNNGGC	1 cut(s)	151
BmgBI	CACGTC	1 cut(s)	343
Bpu10I	CCTNAGC	1 cut(s)	198
BpuEI	CTTGAG	3 cut(s)	86, 265, 313
BseGI	GGATG	1 cut(s)	297
BseRI	GAGGAG	1 cut(s)	272
BseYI	CCCAGC	1 cut(s)	224
Bsh1285I	CGRYCG	1 cut(s)	289
BshFI	GGCC	1 cut(s)	363
BsiEI	CGRYCG	1 cut(s)	289
BsmAI	GTCTC	1 cut(s)	322
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	363
Bsp143I	GATC	3 cut(s)	286, 294, 393
BspANI	GGCC	1 cut(s)	363
BspHI	TCATGA	1 cut(s)	232
BspMI	ACCTGC	1 cut(s)	209
BspPI	GGATC	1 cut(s)	401
BssMI	GATC	3 cut(s)	286, 294, 393
BssNAI	GTATAC	1 cut(s)	159
Bst1107I	GTATAC	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	239
Bst6I	CTCTTC	2 cut(s)	40, 329
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	297
BstKTI	GATC	3 cut(s)	289, 297, 396
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	3 cut(s)	286, 294, 393
BstMCI	CGRYCG	1 cut(s)	289
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstZ17I	GTATAC	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	363
BtrI	CACGTC	1 cut(s)	343
BtsCI	GGATG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	244
BveI	ACCTGC	1 cut(s)	209
Cac8I	GCNNGC	1 cut(s)	143
CaiI	CAGNNNCTG	1 cut(s)	224
CciI	TCATGA	1 cut(s)	232
CviAII	CATG	2 cut(s)	107, 233
CviJI	RGCY	8 cut(s)	6, 23, 117, 145, 154, 229, 309, 363
CviKI_1	RGCY	8 cut(s)	6, 23, 117, 145, 154, 229, 309, 363
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	3 cut(s)	288, 296, 395
DpnII	GATC	3 cut(s)	286, 294, 393
Eam1104I	CTCTTC	2 cut(s)	40, 329
EarI	CTCTTC	2 cut(s)	40, 329
Eco147I	AGGCCT	1 cut(s)	363
FaeI	CATG	2 cut(s)	110, 236
FatI	CATG	2 cut(s)	106, 232
FblI	GTMKAC	1 cut(s)	158
FokI	GGATG	1 cut(s)	304
GsaI	CCCAGC	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	363
Hin1II	CATG	2 cut(s)	110, 236
HinfI	GANTC	1 cut(s)	188
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	4 cut(s)	66, 182, 291, 398
Hpy188III	TCNNGA	3 cut(s)	206, 233, 330
Hpy8I	GTNNAC	1 cut(s)	159
HpyAV	CCTTC	2 cut(s)	203, 353
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	2 cut(s)	218, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	2 cut(s)	110, 236
Kzo9I	GATC	3 cut(s)	286, 294, 393
LpnPI	CCDG	6 cut(s)	29, 107, 191, 204, 210, 256
MaeII	ACGT	1 cut(s)	342
MalI	GATC	3 cut(s)	288, 296, 395
MboI	GATC	3 cut(s)	286, 294, 393
MboII	GAAGA	4 cut(s)	27, 274, 316, 361
MluCI	AATT	3 cut(s)	127, 243, 333
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	358
MnlI	CCTC	1 cut(s)	250
MseI	TTAA	2 cut(s)	56, 126
MslI	CAYNNNNRTG	2 cut(s)	111, 237
Mva1269I	GAATGC	1 cut(s)	199
MwoI	GCNNNNNNNGC	1 cut(s)	151
NdeII	GATC	3 cut(s)	286, 294, 393
NlaIII	CATG	2 cut(s)	110, 236
PagI	TCATGA	1 cut(s)	232
PaqCI	CACCTGC	1 cut(s)	209
PceI	AGGCCT	1 cut(s)	363
PctI	GAATGC	1 cut(s)	199
Ple19I	CGATCG	1 cut(s)	289
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
PspFI	CCCAGC	1 cut(s)	224
PstNI	CAGNNNCTG	1 cut(s)	224
PvuI	CGATCG	1 cut(s)	289
RseI	CAYNNNNRTG	2 cut(s)	111, 237
SaqAI	TTAA	2 cut(s)	56, 126
Sau3AI	GATC	3 cut(s)	286, 294, 393
SchI	GAGTC	1 cut(s)	182
SetI	ASST	5 cut(s)	8, 126, 204, 223, 345
SmiMI	CAYNNNNRTG	2 cut(s)	111, 237
SmlI	CTYRAG	4 cut(s)	101, 280, 328, 386
SmoI	CTYRAG	4 cut(s)	101, 280, 328, 386
Sse9I	AATT	3 cut(s)	127, 243, 333
SseBI	AGGCCT	1 cut(s)	363
SspI	AATATT	1 cut(s)	75
StuI	AGGCCT	1 cut(s)	363
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	2 cut(s)	94, 191
TasI	AATT	3 cut(s)	127, 243, 333
Tru1I	TTAA	2 cut(s)	56, 126
Tru9I	TTAA	2 cut(s)	56, 126
TscAI	CASTG	1 cut(s)	244
TspDTI	ATGAA	2 cut(s)	72, 221
TspRI	CASTG	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.