Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Forward (+)

58483717 .. 58485066

Gene Structure 1350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20966

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAATGCTCCTCTTTCTTTGACCCATCAACTTAAGAGCATAATGAAGAGTACTTCAAGAATACCTTGGCCTGGTGATGAAGGTGATGAGAGGTGGAATCAAGCTTGGTGTGAAATAAAGAAGGTTTGGGCTTCAAAGTGGAATGAAAGAGCTTTTATTAGTTGTAAGAAAGCTAAACTAGATGATGAGGATATATGCATTGCTGTATTGATTCAAGAAATCATCTGTGCCGATTATGCCTCTGTTATTCACACAAAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2934 PPDK_N

Protein Analysis

87

Amino Acids

10.02

Weight (kDa)

6.71

Isoelectric Point (pI)

31.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPDK_N	PF01326	37 - 86	3.5e-07	Pyruvate phosphate dikinase, AMP/ATP-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	52
AfiI	CCNNNNNNNGG	1 cut(s)	71
AflII	CTTAAG	1 cut(s)	32
AgsI	TTSAA	3 cut(s)	57, 135, 215
AjnI	CCWGG	1 cut(s)	70
AluBI	AGCT	3 cut(s)	104, 152, 173
AluI	AGCT	3 cut(s)	104, 152, 173
AoxI	GGCC	1 cut(s)	68
AsuHPI	GGTGA	2 cut(s)	86, 95
BccI	CCATC	1 cut(s)	33
BciT130I	CCWGG	1 cut(s)	72
BfaI	CTAG	1 cut(s)	179
BfrI	CTTAAG	1 cut(s)	32
BmcAI	AGTACT	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	65
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMI	GCAATG	1 cut(s)	198
BshFI	GGCC	1 cut(s)	70
BslI	CCNNNNNNNGG	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	70
BspANI	GGCC	1 cut(s)	70
BspTI	CTTAAG	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	198
BssECI	CCNNGG	1 cut(s)	65
BssT1I	CCWWGG	1 cut(s)	65
Bst2UI	CCWGG	1 cut(s)	72
Bst6I	CTCTTC	1 cut(s)	41
BstAFI	CTTAAG	1 cut(s)	32
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	51
CviJI	RGCY	5 cut(s)	70, 104, 131, 152, 173
CviKI_1	RGCY	5 cut(s)	70, 104, 131, 152, 173
CviQI	GTAC	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	65
EcoT22I	ATGCAT	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	65
FaiI	YATR	4 cut(s)	41, 194, 196, 237
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FspBI	CTAG	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	70
HindIII	AAGCTT	1 cut(s)	102
HinfI	GANTC	2 cut(s)	97, 211
HphI	GGTGA	2 cut(s)	86, 95
Hpy188III	TCNNGA	2 cut(s)	57, 215
HpyAV	CCTTC	2 cut(s)	74, 115
HpyCH4V	TGCA	1 cut(s)	198
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	2 cut(s)	57, 84
MaeI	CTAG	1 cut(s)	179
MboII	GAAGA	1 cut(s)	58
MluCI	AATT	1 cut(s)	259
MnlI	CCTC	4 cut(s)	21, 84, 181, 250
Mph1103I	ATGCAT	1 cut(s)	200
MseI	TTAA	2 cut(s)	33, 262
MspCI	CTTAAG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	72
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	236
NsiI	ATGCAT	1 cut(s)	200
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	97, 211
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
SaqAI	TTAA	2 cut(s)	33, 262
ScaI	AGTACT	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	72
SetI	ASST	7 cut(s)	67, 85, 95, 106, 126, 154, 175
SgeI	CNNG	8 cut(s)	69, 78, 83, 84, 113, 117, 191, 227
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	1 cut(s)	259
SspMI	CTAG	1 cut(s)	179
StyD4I	CCNGG	1 cut(s)	70
StyI	CCWWGG	1 cut(s)	65
TasI	AATT	1 cut(s)	259
TatI	WGTACW	1 cut(s)	50
TfiI	GAWTC	2 cut(s)	97, 211
Tru1I	TTAA	2 cut(s)	33, 262
Tru9I	TTAA	2 cut(s)	33, 262
TspDTI	ATGAA	4 cut(s)	17, 59, 93, 159
Vha464I	CTTAAG	1 cut(s)	32
XspI	CTAG	1 cut(s)	179
ZrmI	AGTACT	1 cut(s)	52
Zsp2I	ATGCAT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.