Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000008

Orthogroup ID

OG0001200

Physical Location & Seq

Genomic Coordinates Reverse (-)

13173 .. 13418

Gene Structure 246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RorugPtG0000600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGGATTGGCCGTCGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGTACTGCTGCGGGACAGGCTGTAGAAGGGATCGCGAGACAACCAGAGGCGGAAGGAAAAATACGGGGTACTTTATTGCTTAGTCTAGCTTTCATGGAAGCTTTAACAATTTATGGGCTAGTTGTAGCATTAGCTCTTTTATTTGCGAATCCTTTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009608 GO:0009610 GO:0009620 GO:0009628 GO:0009631 GO:0009941 GO:0009987 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016781 GO:0031967 GO:0031975 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050521 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPDK_N

Protein Analysis

81

Amino Acids

7.99

Weight (kDa)

4.94

Isoelectric Point (pI)

9.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_C	PF00137	11 - 73	8.9e-20	ATP synthase subunit C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001200)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0129611 RchiOBHm_Chr3g0476471 RchiOBHm_Chr6g0270131 RchiOBHm_Chr7g0233921 RchiOBHm_Chr7g0233931 RchiOBHm_Chr7g0234461 RchiOBHm_Chr7g0234611 RchiOBHm_Chr7g0234621
rosa_laevigata	RLG00000001213 RLG00000001221 RLG00000001227 RLG00000021012 RLG00000023959
rosa_multiflora	Rmu_co8468527.1_g000001 Rmu_sc0000974.1_g000014 Rmu_sc0001528.1_g000001 Rmu_sc0003291.1_g000028 Rmu_sc0003321.1_g000002 Rmu_sc0004303.1_g000006 Rmu_sc0004864.1_g000021 Rmu_sc0008667.1_g000013 Rmu_sc0011456.1_g000004 Rmu_sc0023836.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049680 Rroxscaffold_3G00226730 Rroxscaffold_3G00226790 Rroxscaffold_3G00226800 Rroxscaffold_4G00302360
rosa_rugosa	Rorug01G0119600 Rorug01G0119700 Rorug01G0119800 Rorug02G0400100 Rorug07G0163100 Rorug07G0163100 Rorug07G0163200.1 Rorug07G0284900 Rorug07G0285500 RorugPtG0000400.1 RorugPtG0000500 RorugPtG0000600
rosa_samantha	Rh1DG123700 Rh2AG327500 Rh2DG356100 Rh2DG519500 Rh3DG370800 Rh5AG164500 Rh5CG516500 Rh7AG439900 Rh7BG412700 Rh7BG412900 Rh7BG413000 Rh7CG461700
rosa_wichuraiana	Rw2G026740 Rw7G036220 Rw7G036280 Rw7G036420 Rw7G036560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	119
AciI	CCGC	3 cut(s)	21, 95, 134
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	45
AfaI	GTAC	2 cut(s)	88, 154
AfiI	CCNNNNNNNGG	1 cut(s)	77
AjnI	CCWGG	1 cut(s)	70
AluBI	AGCT	3 cut(s)	173, 185, 218
AluI	AGCT	3 cut(s)	173, 185, 218
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	1 cut(s)	122
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	2 cut(s)	35, 92
AspS9I	GGNCC	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	68
BarI	GAAGNNNNNNTAC	2 cut(s)	129, 161
BbvI	GCAGC	2 cut(s)	22, 79
BceAI	ACGGC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	2 cut(s)	170, 203
BfmI	CTRYAG	1 cut(s)	105
BisI	GCNGC	3 cut(s)	21, 36, 93
BlsI	GCNGC	3 cut(s)	22, 37, 94
Bme1390I	CCNGG	1 cut(s)	72
Bme18I	GGWCC	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	68
BmrFI	CCNGG	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	22, 79
Bsh1236I	CGCG	1 cut(s)	119
BshFI	GGCC	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	111
BsnI	GGCC	1 cut(s)	47
Bsp143I	GATC	1 cut(s)	114
Bsp68I	TCGCGA	1 cut(s)	119
BspACI	CCGC	3 cut(s)	21, 95, 134
BspANI	GGCC	1 cut(s)	47
BspFNI	CGCG	1 cut(s)	119
BspPI	GGATC	1 cut(s)	122
BssMI	GATC	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	164
BstFNI	CGCG	1 cut(s)	119
BstKTI	GATC	1 cut(s)	117
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 101
BstNI	CCWGG	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	70
BstSFI	CTRYAG	1 cut(s)	105
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	2 cut(s)	22, 79
BsuRI	GGCC	1 cut(s)	47
BtsIMutI	CAGTG	1 cut(s)	8
BtuMI	TCGCGA	1 cut(s)	119
Cac8I	GCNNGC	1 cut(s)	57
Cfr13I	GGNCC	1 cut(s)	68
Csp6I	GTAC	2 cut(s)	87, 153
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	7 cut(s)	47, 55, 104, 173, 185, 202, 218
CviKI_1	RGCY	7 cut(s)	47, 55, 104, 173, 185, 202, 218
CviQI	GTAC	2 cut(s)	87, 153
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
EaeI	YGGCCR	1 cut(s)	45
EciI	GGCGGA	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	70
FaeI	CATG	1 cut(s)	181
FaiI	YATR	2 cut(s)	179, 198
FaqI	GGGAC	1 cut(s)	111
FatI	CATG	1 cut(s)	177
FauI	CCCGC	1 cut(s)	88
Fnu4HI	GCNGC	3 cut(s)	21, 36, 93
Fsp4HI	GCNGC	3 cut(s)	21, 36, 93
FspBI	CTAG	2 cut(s)	170, 203
GluI	GCNGC	3 cut(s)	21, 36, 93
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	47
Hin1II	CATG	1 cut(s)	181
HindIII	AAGCTT	1 cut(s)	183
HinfI	GANTC	2 cut(s)	4, 232
Hpy188III	TCNNGA	1 cut(s)	118
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	104, 131
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 101
HpyF3I	CTNAG	1 cut(s)	164
Hsp92II	CATG	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	114
LpnPI	CCDG	5 cut(s)	24, 57, 84, 86, 141
Lsp1109I	GCAGC	2 cut(s)	22, 79
MaeI	CTAG	2 cut(s)	170, 203
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MluCI	AATT	1 cut(s)	192
MnlI	CCTC	1 cut(s)	124
MseI	TTAA	2 cut(s)	188, 244
MspR9I	CCNGG	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	72
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	2 cut(s)	44, 101
NdeII	GATC	1 cut(s)	114
NlaIII	CATG	1 cut(s)	181
NruI	TCGCGA	1 cut(s)	119
PfeI	GAWTC	2 cut(s)	4, 232
PkrI	GCNGC	3 cut(s)	22, 37, 94
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
PspPI	GGNCC	1 cut(s)	68
RruI	TCGCGA	1 cut(s)	119
RsaI	GTAC	2 cut(s)	88, 154
RsaNI	GTAC	2 cut(s)	87, 153
SaqAI	TTAA	2 cut(s)	188, 244
SatI	GCNGC	3 cut(s)	21, 36, 93
Sau3AI	GATC	1 cut(s)	114
Sau96I	GGNCC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	72
SetI	ASST	5 cut(s)	73, 88, 175, 187, 220
SfcI	CTRYAG	1 cut(s)	105
SinI	GGWCC	1 cut(s)	68
Sse9I	AATT	1 cut(s)	192
SsiI	CCGC	3 cut(s)	21, 95, 134
SspMI	CTAG	2 cut(s)	170, 203
StyD4I	CCNGG	1 cut(s)	70
TasI	AATT	1 cut(s)	192
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	2 cut(s)	4, 232
Tru1I	TTAA	2 cut(s)	188, 244
Tru9I	TTAA	2 cut(s)	188, 244
TscAI	CASTG	1 cut(s)	15
TseI	GCWGC	2 cut(s)	35, 92
TspDTI	ATGAA	2 cut(s)	17, 166
TspGWI	ACGGA	1 cut(s)	16
TspRI	CASTG	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	68
XspI	CTAG	2 cut(s)	170, 203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.