RNA polymerase II C-terminal domain phosphatase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NPH3 | PF03000 | 231 - 517 | 1.6e-98 | NPH3 family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1093 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1246 |
| Acc36I | ACCTGC | 1 cut(s) | 1093 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 599 |
| AciI | CCGC | 4 cut(s) | 1145, 1724, 1896, 1973 |
| AclWI | GGATC | 3 cut(s) | 339, 1155, 1203 |
| AcoI | YGGCCR | 2 cut(s) | 590, 1638 |
| AcsI | RAATTY | 2 cut(s) | 1822, 2017 |
| AcuI | CTGAAG | 1 cut(s) | 936 |
| AfaI | GTAC | 2 cut(s) | 1395, 1808 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 277, 599, 1519, 1973 |
| AflII | CTTAAG | 1 cut(s) | 247 |
| AflIII | ACRYGT | 1 cut(s) | 1068 |
| AjiI | CACGTC | 1 cut(s) | 646 |
| AjnI | CCWGG | 1 cut(s) | 274 |
| Alw21I | GWGCWC | 1 cut(s) | 1494 |
| Alw26I | GTCTC | 7 cut(s) | 8, 231, 459, 1033, 1662, 1837, 1955 |
| AlwI | GGATC | 3 cut(s) | 339, 1155, 1203 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 17 |
| AoxI | GGCC | 7 cut(s) | 288, 355, 590, 963, 1300, 1638, 1860 |
| ApoI | RAATTY | 2 cut(s) | 1822, 2017 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 432, 519, 1372 |
| AspA2I | CCTAGG | 1 cut(s) | 2003 |
| AspS9I | GGNCC | 7 cut(s) | 281, 1301, 1425, 1594, 1719, 1955, 1979 |
| AsuC2I | CCSGG | 2 cut(s) | 242, 1514 |
| AsuHPI | GGTGA | 2 cut(s) | 495, 772 |
| AsuII | TTCGAA | 1 cut(s) | 1128 |
| AsuNHI | GCTAGC | 2 cut(s) | 298, 610 |
| AvaII | GGWCC | 6 cut(s) | 281, 1425, 1594, 1719, 1955, 1979 |
| AvrII | CCTAGG | 1 cut(s) | 2003 |
| AxyI | CCTNAGG | 1 cut(s) | 285 |
| BaeGI | GKGCMC | 1 cut(s) | 1298 |
| BalI | TGGCCA | 2 cut(s) | 592, 1640 |
| BbsI | GAAGAC | 1 cut(s) | 942 |
| Bbv12I | GWGCWC | 1 cut(s) | 1494 |
| BccI | CCATC | 7 cut(s) | 80, 250, 582, 1430, 1737, 1852, 1893 |
| BceAI | ACGGC | 1 cut(s) | 941 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 533, 567 |
| BciT130I | CCWGG | 1 cut(s) | 276 |
| BciVI | GTATCC | 2 cut(s) | 195, 576 |
| BclI | TGATCA | 2 cut(s) | 727, 981 |
| BcnI | CCSGG | 2 cut(s) | 242, 1514 |
| BcoDI | GTCTC | 7 cut(s) | 8, 231, 459, 1033, 1662, 1837, 1955 |
| BfaI | CTAG | 3 cut(s) | 299, 611, 2004 |
| BfmI | CTRYAG | 1 cut(s) | 369 |
| BfrI | CTTAAG | 1 cut(s) | 247 |
| BfuAI | ACCTGC | 1 cut(s) | 1093 |
| BfuI | GTATCC | 2 cut(s) | 195, 576 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 962 |
| BlnI | CCTAGG | 1 cut(s) | 2003 |
| Bme1390I | CCNGG | 3 cut(s) | 242, 276, 1514 |
| Bme18I | GGWCC | 6 cut(s) | 281, 1425, 1594, 1719, 1955, 1979 |
| BmgBI | CACGTC | 1 cut(s) | 646 |
| BmgT120I | GGNCC | 7 cut(s) | 281, 1301, 1425, 1594, 1719, 1955, 1979 |
| BmiI | GGNNCC | 5 cut(s) | 282, 821, 1577, 1720, 1721 |
| BmrFI | CCNGG | 3 cut(s) | 242, 276, 1514 |
| BmsI | GCATC | 3 cut(s) | 527, 697, 1534 |
| BmtI | GCTAGC | 2 cut(s) | 302, 614 |
| BoxI | GACNNNNGTC | 1 cut(s) | 657 |
| BpiI | GAAGAC | 1 cut(s) | 942 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 830, 862 |
| BpmI | CTGGAG | 2 cut(s) | 1235, 1808 |
| Bpu14I | TTCGAA | 1 cut(s) | 1128 |
| BpuEI | CTTGAG | 2 cut(s) | 640, 1451 |
| BpuMI | CCSGG | 2 cut(s) | 242, 1514 |
| Bsa29I | ATCGAT | 1 cut(s) | 1538 |
| BsaBI | GATNNNNATC | 4 cut(s) | 983, 1194, 1341, 1461 |
| BsaI | GGTCTC | 1 cut(s) | 231 |
| BsaJI | CCNNGG | 4 cut(s) | 275, 506, 1827, 2003 |
| BsaWI | WCCGGW | 1 cut(s) | 1957 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 277, 599, 1519, 1973 |
| Bse1I | ACTGG | 3 cut(s) | 604, 1095, 1791 |
| Bse21I | CCTNAGG | 1 cut(s) | 285 |
| Bse3DI | GCAATG | 2 cut(s) | 52, 1636 |
| Bse8I | GATNNNNATC | 4 cut(s) | 983, 1194, 1341, 1461 |
| BseBI | CCWGG | 1 cut(s) | 276 |
| BseCI | ATCGAT | 1 cut(s) | 1538 |
| BseDI | CCNNGG | 4 cut(s) | 275, 506, 1827, 2003 |
| BseGI | GGATG | 6 cut(s) | 271, 774, 984, 1474, 1748, 1904 |
| BseJI | GATNNNNATC | 4 cut(s) | 983, 1194, 1341, 1461 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 277, 599, 1519, 1973 |
| BseMI | GCAATG | 2 cut(s) | 52, 1636 |
| BseMII | CTCAG | 7 cut(s) | 9, 276, 451, 1046, 1089, 1479, 1602 |
| BseNI | ACTGG | 3 cut(s) | 604, 1095, 1791 |
| BseRI | GAGGAG | 1 cut(s) | 1680 |
| BseSI | GKGCMC | 1 cut(s) | 1298 |
| BsgI | GTGCAG | 2 cut(s) | 1071, 1545 |
| BshFI | GGCC | 7 cut(s) | 290, 357, 592, 965, 1302, 1640, 1862 |
| BshVI | ATCGAT | 1 cut(s) | 1538 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1494 |
| BsiSI | CCGG | 4 cut(s) | 242, 1513, 1662, 1958 |
| BslFI | GGGAC | 2 cut(s) | 294, 1732 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 277, 599, 1519, 1973 |
| BsmAI | GTCTC | 7 cut(s) | 8, 231, 459, 1033, 1662, 1837, 1955 |
| BsmFI | GGGAC | 2 cut(s) | 294, 1732 |
| BsmI | GAATGC | 1 cut(s) | 1125 |
| BsnI | GGCC | 7 cut(s) | 290, 357, 592, 965, 1302, 1640, 1862 |
| Bso31I | GGTCTC | 1 cut(s) | 231 |
| Bsp119I | TTCGAA | 1 cut(s) | 1128 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1298, 1494 |
| Bsp143I | GATC | 8 cut(s) | 331, 727, 921, 970, 981, 1147, 1195, 1813 |
| Bsp19I | CCATGG | 1 cut(s) | 1827 |
| BspACI | CCGC | 4 cut(s) | 1145, 1724, 1896, 1973 |
| BspANI | GGCC | 7 cut(s) | 290, 357, 592, 965, 1302, 1640, 1862 |
| BspCNI | CTCAG | 7 cut(s) | 10, 277, 450, 1047, 1090, 1480, 1603 |
| BspDI | ATCGAT | 1 cut(s) | 1538 |
| BspLI | GGNNCC | 5 cut(s) | 282, 821, 1577, 1720, 1721 |
| BspMAI | CTGCAG | 1 cut(s) | 373 |
| BspMI | ACCTGC | 1 cut(s) | 1093 |
| BspOI | GCTAGC | 2 cut(s) | 302, 614 |
| BspPI | GGATC | 3 cut(s) | 339, 1155, 1203 |
| BspT104I | TTCGAA | 1 cut(s) | 1128 |
| BspTI | CTTAAG | 1 cut(s) | 247 |
| BspTNI | GGTCTC | 1 cut(s) | 231 |
| BsrDI | GCAATG | 2 cut(s) | 52, 1636 |
| BsrI | ACTGG | 3 cut(s) | 604, 1095, 1791 |
| BssECI | CCNNGG | 4 cut(s) | 275, 506, 1827, 2003 |
| BssMI | GATC | 8 cut(s) | 331, 727, 921, 970, 981, 1147, 1195, 1813 |
| BssT1I | CCWWGG | 2 cut(s) | 1827, 2003 |
| Bst2UI | CCWGG | 1 cut(s) | 276 |
| Bst4CI | ACNGT | 5 cut(s) | 507, 1025, 1774, 1848, 1952 |
| BstAFI | CTTAAG | 1 cut(s) | 247 |
| BstBI | TTCGAA | 1 cut(s) | 1128 |
| BstC8I | GCNNGC | 7 cut(s) | 68, 300, 612, 871, 1549, 1553, 1557 |
| BstDSI | CCRYGG | 2 cut(s) | 506, 1827 |
| BstF5I | GGATG | 6 cut(s) | 271, 774, 984, 1474, 1748, 1904 |
| BstKTI | GATC | 8 cut(s) | 334, 730, 924, 973, 984, 1150, 1198, 1816 |
| BstMAI | GTCTC | 7 cut(s) | 8, 231, 459, 1033, 1662, 1837, 1955 |
| BstMBI | GATC | 8 cut(s) | 331, 727, 921, 970, 981, 1147, 1195, 1813 |
| BstNI | CCWGG | 1 cut(s) | 276 |
| BstNSI | RCATGY | 3 cut(s) | 1072, 1555, 1559 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 657 |
| BstSCI | CCNGG | 3 cut(s) | 240, 274, 1512 |
| BstSFI | CTRYAG | 1 cut(s) | 369 |
| BstSLI | GKGCMC | 1 cut(s) | 1298 |
| BstV2I | GAAGAC | 1 cut(s) | 942 |
| BstX2I | RGATCY | 3 cut(s) | 331, 1147, 1195 |
| BstYI | RGATCY | 3 cut(s) | 331, 1147, 1195 |
| Bsu15I | ATCGAT | 1 cut(s) | 1538 |
| Bsu36I | CCTNAGG | 1 cut(s) | 285 |
| BsuI | GTATCC | 2 cut(s) | 195, 576 |
| BsuRI | GGCC | 7 cut(s) | 290, 357, 592, 965, 1302, 1640, 1862 |
| BsuTUI | ATCGAT | 1 cut(s) | 1538 |
| BtgI | CCRYGG | 2 cut(s) | 506, 1827 |
| BtrI | CACGTC | 1 cut(s) | 646 |
| BtsCI | GGATG | 6 cut(s) | 271, 774, 984, 1474, 1748, 1904 |
| BtsI | GCAGTG | 1 cut(s) | 895 |
| BtsIMutI | CAGTG | 5 cut(s) | 895, 1030, 1088, 1770, 1957 |
| BveI | ACCTGC | 1 cut(s) | 1093 |
| Cac8I | GCNNGC | 7 cut(s) | 68, 300, 612, 871, 1549, 1553, 1557 |
| CaiI | CAGNNNCTG | 1 cut(s) | 17 |
| Cfr13I | GGNCC | 7 cut(s) | 281, 1301, 1425, 1594, 1719, 1955, 1979 |
| ClaI | ATCGAT | 1 cut(s) | 1538 |
| Csp6I | GTAC | 2 cut(s) | 1394, 1807 |
| CviQI | GTAC | 2 cut(s) | 1394, 1807 |
| DpnI | GATC | 8 cut(s) | 333, 729, 923, 972, 983, 1149, 1197, 1815 |
| DpnII | GATC | 8 cut(s) | 331, 727, 921, 970, 981, 1147, 1195, 1813 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1246 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1246 |
| EaeI | YGGCCR | 2 cut(s) | 590, 1638 |
| EciI | GGCGGA | 1 cut(s) | 1160 |
| Eco130I | CCWWGG | 2 cut(s) | 1827, 2003 |
| Eco147I | AGGCCT | 2 cut(s) | 290, 357 |
| Eco31I | GGTCTC | 1 cut(s) | 231 |
| Eco32I | GATATC | 1 cut(s) | 130 |
| Eco47I | GGWCC | 6 cut(s) | 281, 1425, 1594, 1719, 1955, 1979 |
| Eco57I | CTGAAG | 1 cut(s) | 936 |
| Eco81I | CCTNAGG | 1 cut(s) | 285 |
| EcoO109I | RGGNCCY | 3 cut(s) | 281, 1425, 1719 |
| EcoRI | GAATTC | 1 cut(s) | 2017 |
| EcoRII | CCWGG | 1 cut(s) | 274 |
| EcoRV | GATATC | 1 cut(s) | 130 |
| EcoT14I | CCWWGG | 2 cut(s) | 1827, 2003 |
| EcoT22I | ATGCAT | 2 cut(s) | 1557, 1636 |
| ErhI | CCWWGG | 2 cut(s) | 1827, 2003 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 173, 205, 396, 428 |
| FaqI | GGGAC | 2 cut(s) | 294, 1732 |
| FauI | CCCGC | 2 cut(s) | 1731, 1966 |
| FbaI | TGATCA | 2 cut(s) | 727, 981 |
| FokI | GGATG | 6 cut(s) | 278, 781, 991, 1461, 1755, 1911 |
| FspBI | CTAG | 3 cut(s) | 299, 611, 2004 |
| GsuI | CTGGAG | 2 cut(s) | 1235, 1808 |
| HaeIII | GGCC | 7 cut(s) | 290, 357, 592, 965, 1302, 1640, 1862 |
| HapII | CCGG | 4 cut(s) | 242, 1513, 1662, 1958 |
| HincII | GTYRAC | 1 cut(s) | 855 |
| HindII | GTYRAC | 1 cut(s) | 855 |
| HindIII | AAGCTT | 2 cut(s) | 1328, 1404 |
| HpaI | GTTAAC | 1 cut(s) | 855 |
| HpaII | CCGG | 4 cut(s) | 242, 1513, 1662, 1958 |
| HphI | GGTGA | 2 cut(s) | 495, 772 |
| Hpy166II | GTNNAC | 3 cut(s) | 855, 911, 1955 |
| Hpy188I | TCNGA | 9 cut(s) | 13, 336, 534, 723, 1056, 1489, 1612, 1701, 1947 |
| Hpy188III | TCNNGA | 8 cut(s) | 689, 988, 1204, 1214, 1232, 1359, 1939, 1982 |
| Hpy8I | GTNNAC | 3 cut(s) | 855, 911, 1955 |
| HpyCH4III | ACNGT | 5 cut(s) | 507, 1025, 1774, 1848, 1952 |
| HpyCH4IV | ACGT | 1 cut(s) | 645 |
| HpySE526I | ACGT | 1 cut(s) | 645 |
| KflI | GGGWCCC | 1 cut(s) | 1719 |
| Ksp22I | TGATCA | 2 cut(s) | 727, 981 |
| KspAI | GTTAAC | 1 cut(s) | 855 |
| Kzo9I | GATC | 8 cut(s) | 331, 727, 921, 970, 981, 1147, 1195, 1813 |
| LmnI | GCTCC | 6 cut(s) | 619, 788, 825, 1216, 1581, 1890 |
| LweI | GCATC | 3 cut(s) | 527, 697, 1534 |
| MaeI | CTAG | 3 cut(s) | 299, 611, 2004 |
| MaeII | ACGT | 1 cut(s) | 645 |
| MaeIII | GTNAC | 3 cut(s) | 137, 641, 1093 |
| MalI | GATC | 8 cut(s) | 333, 729, 923, 972, 983, 1149, 1197, 1815 |
| MboI | GATC | 8 cut(s) | 331, 727, 921, 970, 981, 1147, 1195, 1813 |
| MboII | GAAGA | 7 cut(s) | 413, 710, 716, 942, 1037, 1142, 1915 |
| MfeI | CAATTG | 1 cut(s) | 1452 |
| MflI | RGATCY | 3 cut(s) | 331, 1147, 1195 |
| MhlI | GDGCHC | 2 cut(s) | 1298, 1494 |
| MlsI | TGGCCA | 2 cut(s) | 592, 1640 |
| MluNI | TGGCCA | 2 cut(s) | 592, 1640 |
| MlyI | GAGTC | 8 cut(s) | 29, 461, 554, 647, 956, 1664, 1957, 1993 |
| MmeI | TCCRAC | 6 cut(s) | 7, 136, 881, 1083, 1502, 1991 |
| Mox20I | TGGCCA | 2 cut(s) | 592, 1640 |
| Mph1103I | ATGCAT | 2 cut(s) | 1557, 1636 |
| MroXI | GAANNNNTTC | 3 cut(s) | 432, 519, 1372 |
| MscI | TGGCCA | 2 cut(s) | 592, 1640 |
| MseI | TTAA | 7 cut(s) | 62, 78, 248, 854, 1583, 1653, 1767 |
| MslI | CAYNNNNRTG | 3 cut(s) | 326, 476, 923 |
| Msp20I | TGGCCA | 2 cut(s) | 592, 1640 |
| MspA1I | CMGCKG | 4 cut(s) | 676, 860, 1896, 1973 |
| MspCI | CTTAAG | 1 cut(s) | 247 |
| MspI | CCGG | 4 cut(s) | 242, 1513, 1662, 1958 |
| MspR9I | CCNGG | 3 cut(s) | 242, 276, 1514 |
| MunI | CAATTG | 1 cut(s) | 1452 |
| Mva1269I | GAATGC | 1 cut(s) | 1125 |
| MvaI | CCWGG | 1 cut(s) | 276 |
| NciI | CCSGG | 2 cut(s) | 242, 1514 |
| NcoI | CCATGG | 1 cut(s) | 1827 |
| NdeII | GATC | 8 cut(s) | 331, 727, 921, 970, 981, 1147, 1195, 1813 |
| NheI | GCTAGC | 2 cut(s) | 298, 610 |
| NlaIV | GGNNCC | 5 cut(s) | 282, 821, 1577, 1720, 1721 |
| NmeAIII | GCCGAG | 1 cut(s) | 1890 |
| NmuCI | GTSAC | 2 cut(s) | 137, 641 |
| NsiI | ATGCAT | 2 cut(s) | 1557, 1636 |
| NspI | RCATGY | 3 cut(s) | 1072, 1555, 1559 |
| NspV | TTCGAA | 1 cut(s) | 1128 |
| PaeI | GCATGC | 2 cut(s) | 1555, 1559 |
| PaqCI | CACCTGC | 1 cut(s) | 1093 |
| PceI | AGGCCT | 2 cut(s) | 290, 357 |
| PciI | ACATGT | 1 cut(s) | 1068 |
| PctI | GAATGC | 1 cut(s) | 1125 |
| PdmI | GAANNNNTTC | 3 cut(s) | 432, 519, 1372 |
| PfeI | GAWTC | 6 cut(s) | 8, 219, 1415, 1457, 1690, 1942 |
| PflFI | GACNNNGTC | 2 cut(s) | 19, 1025 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 599 |
| PleI | GAGTC | 8 cut(s) | 28, 461, 553, 647, 955, 1664, 1957, 1993 |
| PpsI | GAGTC | 8 cut(s) | 28, 461, 553, 647, 955, 1664, 1957, 1993 |
| PpuMI | RGGWCCY | 3 cut(s) | 281, 1425, 1719 |
| PscI | ACATGT | 1 cut(s) | 1068 |
| PshAI | GACNNNNGTC | 1 cut(s) | 657 |
| Psp5II | RGGWCCY | 3 cut(s) | 281, 1425, 1719 |
| Psp6I | CCWGG | 1 cut(s) | 274 |
| PspGI | CCWGG | 1 cut(s) | 274 |
| PspN4I | GGNNCC | 5 cut(s) | 282, 821, 1577, 1720, 1721 |
| PspPI | GGNCC | 7 cut(s) | 281, 1301, 1425, 1594, 1719, 1955, 1979 |
| PspPPI | RGGWCCY | 3 cut(s) | 281, 1425, 1719 |
| PstI | CTGCAG | 1 cut(s) | 373 |
| PstNI | CAGNNNCTG | 1 cut(s) | 17 |
| PsuI | RGATCY | 3 cut(s) | 331, 1147, 1195 |
| PsyI | GACNNNGTC | 2 cut(s) | 19, 1025 |
| PvuII | CAGCTG | 2 cut(s) | 676, 860 |
| RsaI | GTAC | 2 cut(s) | 1395, 1808 |
| RsaNI | GTAC | 2 cut(s) | 1394, 1807 |
| RseI | CAYNNNNRTG | 3 cut(s) | 326, 476, 923 |
| SaqAI | TTAA | 7 cut(s) | 62, 78, 248, 854, 1583, 1653, 1767 |
| Sau3AI | GATC | 8 cut(s) | 331, 727, 921, 970, 981, 1147, 1195, 1813 |
| Sau96I | GGNCC | 7 cut(s) | 281, 1301, 1425, 1594, 1719, 1955, 1979 |
| SchI | GAGTC | 8 cut(s) | 29, 461, 554, 647, 956, 1664, 1957, 1993 |
| ScrFI | CCNGG | 3 cut(s) | 242, 276, 1514 |
| SduI | GDGCHC | 2 cut(s) | 1298, 1494 |
| SfaNI | GCATC | 3 cut(s) | 527, 697, 1534 |
| SfcI | CTRYAG | 1 cut(s) | 369 |
| SfuI | TTCGAA | 1 cut(s) | 1128 |
| SinI | GGWCC | 6 cut(s) | 281, 1425, 1594, 1719, 1955, 1979 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 326, 476, 923 |
| SmlI | CTYRAG | 3 cut(s) | 247, 655, 1466 |
| SmoI | CTYRAG | 3 cut(s) | 247, 655, 1466 |
| SphI | GCATGC | 2 cut(s) | 1555, 1559 |
| SseBI | AGGCCT | 2 cut(s) | 290, 357 |
| SsiI | CCGC | 4 cut(s) | 1145, 1724, 1896, 1973 |
| SspMI | CTAG | 3 cut(s) | 299, 611, 2004 |
| StuI | AGGCCT | 2 cut(s) | 290, 357 |
| StyD4I | CCNGG | 3 cut(s) | 240, 274, 1512 |
| StyI | CCWWGG | 2 cut(s) | 1827, 2003 |
| TaaI | ACNGT | 5 cut(s) | 507, 1025, 1774, 1848, 1952 |
| TaiI | ACGT | 1 cut(s) | 648 |
| TaqI | TCGA | 6 cut(s) | 987, 1128, 1538, 1713, 1851, 1938 |
| TfiI | GAWTC | 6 cut(s) | 8, 219, 1415, 1457, 1690, 1942 |
| Tru1I | TTAA | 7 cut(s) | 62, 78, 248, 854, 1583, 1653, 1767 |
| Tru9I | TTAA | 7 cut(s) | 62, 78, 248, 854, 1583, 1653, 1767 |
| TscAI | CASTG | 5 cut(s) | 895, 1030, 1095, 1777, 1957 |
| TseFI | GTSAC | 2 cut(s) | 137, 641 |
| Tsp45I | GTSAC | 2 cut(s) | 137, 641 |
| TspDTI | ATGAA | 9 cut(s) | 99, 227, 243, 792, 879, 1261, 1302, 1584, 1671 |
| TspGWI | ACGGA | 2 cut(s) | 991, 1149 |
| TspRI | CASTG | 5 cut(s) | 895, 1030, 1095, 1777, 1957 |
| Tth111I | GACNNNGTC | 2 cut(s) | 19, 1025 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 599 |
| Vha464I | CTTAAG | 1 cut(s) | 247 |
| VpaK11BI | GGWCC | 6 cut(s) | 281, 1425, 1594, 1719, 1955, 1979 |
| XapI | RAATTY | 2 cut(s) | 1822, 2017 |
| XceI | RCATGY | 3 cut(s) | 1072, 1555, 1559 |
| XmaJI | CCTAGG | 1 cut(s) | 2003 |
| XmnI | GAANNNNTTC | 3 cut(s) | 432, 519, 1372 |
| XspI | CTAG | 3 cut(s) | 299, 611, 2004 |
| Zsp2I | ATGCAT | 2 cut(s) | 1557, 1636 |