TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 28 - 183 | 5.2e-46 | TIR domain |
| TIR_2 | PF13676 | 30 - 126 | 1.2e-12 | TIR domain |
| NB-ARC | PF00931 | 201 - 320 | 5.6e-09 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 425 - 471 | 3.3e-06 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 606 - 679 | 3.1e-08 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1869, 1970 |
| AccB1I | GGYRCC | 1 cut(s) | 158 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 456, 1781 |
| AccI | GTMKAC | 2 cut(s) | 328, 576 |
| AccII | CGCG | 1 cut(s) | 146 |
| AccIII | TCCGGA | 1 cut(s) | 1855 |
| AciI | CCGC | 7 cut(s) | 146, 229, 281, 987, 1645, 1684, 2090 |
| AclI | AACGTT | 1 cut(s) | 1399 |
| AclWI | GGATC | 4 cut(s) | 257, 368, 872, 942 |
| AcuI | CTGAAG | 6 cut(s) | 1033, 1223, 1370, 1440, 1449, 2069 |
| AfaI | GTAC | 9 cut(s) | 447, 486, 903, 1477, 1530, 1649, 1662, 1995, 2088 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 145, 168, 456, 848, 1781, 1858, 2076 |
| AflIII | ACRYGT | 1 cut(s) | 87 |
| AgeI | ACCGGT | 1 cut(s) | 841 |
| AgsI | TTSAA | 7 cut(s) | 288, 565, 605, 943, 1067, 1148, 1957 |
| AhlI | ACTAGT | 1 cut(s) | 151 |
| AjiI | CACGTC | 1 cut(s) | 88 |
| AjnI | CCWGG | 2 cut(s) | 1679, 2022 |
| Alw21I | GWGCWC | 1 cut(s) | 1047 |
| Alw26I | GTCTC | 4 cut(s) | 184, 1418, 1536, 2098 |
| AlwI | GGATC | 4 cut(s) | 257, 368, 872, 942 |
| Ama87I | CYCGRG | 2 cut(s) | 38, 2070 |
| Aor13HI | TCCGGA | 1 cut(s) | 1855 |
| AoxI | GGCC | 1 cut(s) | 2044 |
| ApeKI | GCWGC | 1 cut(s) | 1833 |
| AsiGI | ACCGGT | 1 cut(s) | 841 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 592, 1218, 1289 |
| AspLEI | GCGC | 1 cut(s) | 1000 |
| AspS9I | GGNCC | 5 cut(s) | 123, 133, 974, 1849, 2113 |
| AsuC2I | CCSGG | 3 cut(s) | 978, 2071, 2072 |
| AsuHPI | GGTGA | 1 cut(s) | 1731 |
| AvaI | CYCGRG | 2 cut(s) | 38, 2070 |
| AvaII | GGWCC | 5 cut(s) | 123, 133, 974, 1849, 2113 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2070, 2103 |
| BanI | GGYRCC | 1 cut(s) | 158 |
| BanII | GRGCYC | 1 cut(s) | 1047 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1099, 1131 |
| BauI | CACGAG | 1 cut(s) | 597 |
| BbsI | GAAGAC | 2 cut(s) | 256, 1092 |
| Bbv12I | GWGCWC | 1 cut(s) | 1047 |
| BbvI | GCAGC | 1 cut(s) | 1820 |
| BccI | CCATC | 7 cut(s) | 25, 55, 713, 1220, 1566, 2005, 2069 |
| BciT130I | CCWGG | 2 cut(s) | 1681, 2024 |
| BcnI | CCSGG | 3 cut(s) | 978, 2071, 2072 |
| BcoDI | GTCTC | 4 cut(s) | 184, 1418, 1536, 2098 |
| BcuI | ACTAGT | 1 cut(s) | 151 |
| BfaI | CTAG | 7 cut(s) | 152, 435, 749, 995, 1628, 1811, 2117 |
| BfmI | CTRYAG | 2 cut(s) | 538, 2004 |
| BfoI | RGCGCY | 1 cut(s) | 1001 |
| BglII | AGATCT | 2 cut(s) | 534, 1454 |
| BisI | GCNGC | 3 cut(s) | 147, 1685, 1834 |
| BlsI | GCNGC | 3 cut(s) | 148, 1686, 1835 |
| BmcAI | AGTACT | 1 cut(s) | 486 |
| Bme1390I | CCNGG | 5 cut(s) | 978, 1681, 2024, 2071, 2072 |
| Bme18I | GGWCC | 5 cut(s) | 123, 133, 974, 1849, 2113 |
| BmeT110I | CYCGRG | 2 cut(s) | 38, 2070 |
| BmgBI | CACGTC | 1 cut(s) | 88 |
| BmgT120I | GGNCC | 5 cut(s) | 123, 133, 974, 1849, 2113 |
| BmiI | GGNNCC | 3 cut(s) | 15, 160, 2021 |
| BmrFI | CCNGG | 5 cut(s) | 978, 1681, 2024, 2071, 2072 |
| BmrI | ACTGGG | 3 cut(s) | 70, 347, 575 |
| BmsI | GCATC | 3 cut(s) | 172, 1252, 2087 |
| BmuI | ACTGGG | 3 cut(s) | 70, 347, 575 |
| BpiI | GAAGAC | 2 cut(s) | 256, 1092 |
| BpmI | CTGGAG | 1 cut(s) | 1560 |
| BpuEI | CTTGAG | 6 cut(s) | 115, 320, 1061, 1087, 1486, 1829 |
| BpuMI | CCSGG | 3 cut(s) | 978, 2071, 2072 |
| BsaJI | CCNNGG | 2 cut(s) | 103, 2070 |
| BsaWI | WCCGGW | 4 cut(s) | 10, 55, 841, 1855 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 145, 168, 456, 848, 1781, 1858, 2076 |
| Bse118I | RCCGGY | 1 cut(s) | 841 |
| Bse1I | ACTGG | 7 cut(s) | 65, 342, 581, 1143, 1417, 1543, 1552 |
| BseAI | TCCGGA | 1 cut(s) | 1855 |
| BseBI | CCWGG | 2 cut(s) | 1681, 2024 |
| BseDI | CCNNGG | 2 cut(s) | 103, 2070 |
| BseGI | GGATG | 6 cut(s) | 47, 187, 388, 1997, 2080, 2102 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 145, 168, 456, 848, 1781, 1858, 2076 |
| BseMII | CTCAG | 2 cut(s) | 1261, 1726 |
| BseNI | ACTGG | 7 cut(s) | 65, 342, 581, 1143, 1417, 1543, 1552 |
| BseRI | GAGGAG | 1 cut(s) | 317 |
| BseXI | GCAGC | 1 cut(s) | 1820 |
| BseYI | CCCAGC | 1 cut(s) | 449 |
| BsgI | GTGCAG | 2 cut(s) | 332, 1819 |
| Bsh1236I | CGCG | 1 cut(s) | 146 |
| BshFI | GGCC | 1 cut(s) | 2046 |
| BshNI | GGYRCC | 1 cut(s) | 158 |
| BshTI | ACCGGT | 1 cut(s) | 841 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1047 |
| BsiHKCI | CYCGRG | 2 cut(s) | 38, 2070 |
| BsiSI | CCGG | 7 cut(s) | 11, 56, 162, 842, 977, 1856, 2071 |
| BslFI | GGGAC | 3 cut(s) | 77, 2067, 2092 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 145, 168, 456, 848, 1781, 1858, 2076 |
| BsmAI | GTCTC | 4 cut(s) | 184, 1418, 1536, 2098 |
| BsmFI | GGGAC | 3 cut(s) | 77, 2067, 2092 |
| BsmI | GAATGC | 1 cut(s) | 949 |
| BsnI | GGCC | 1 cut(s) | 2046 |
| BsoBI | CYCGRG | 2 cut(s) | 38, 2070 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1047 |
| Bsp13I | TCCGGA | 1 cut(s) | 1855 |
| Bsp1407I | TGTACA | 1 cut(s) | 1528 |
| Bsp143I | GATC | 8 cut(s) | 249, 315, 373, 534, 864, 925, 934, 1454 |
| BspACI | CCGC | 7 cut(s) | 146, 229, 281, 987, 1645, 1684, 2090 |
| BspANI | GGCC | 1 cut(s) | 2046 |
| BspCNI | CTCAG | 2 cut(s) | 1260, 1725 |
| BspEI | TCCGGA | 1 cut(s) | 1855 |
| BspFNI | CGCG | 1 cut(s) | 146 |
| BspHI | TCATGA | 2 cut(s) | 724, 928 |
| BspLI | GGNNCC | 3 cut(s) | 15, 160, 2021 |
| BspMAI | CTGCAG | 1 cut(s) | 542 |
| BspPI | GGATC | 4 cut(s) | 257, 368, 872, 942 |
| BspQI | GCTCTTC | 2 cut(s) | 457, 1052 |
| BspT107I | GGYRCC | 1 cut(s) | 158 |
| BsrFI | RCCGGY | 1 cut(s) | 841 |
| BsrGI | TGTACA | 1 cut(s) | 1528 |
| BsrI | ACTGG | 7 cut(s) | 65, 342, 581, 1143, 1417, 1543, 1552 |
| BssAI | RCCGGY | 1 cut(s) | 841 |
| BssECI | CCNNGG | 2 cut(s) | 103, 2070 |
| BssMI | GATC | 8 cut(s) | 249, 315, 373, 534, 864, 925, 934, 1454 |
| BssSI | CACGAG | 1 cut(s) | 597 |
| Bst2BI | CACGAG | 1 cut(s) | 597 |
| Bst2UI | CCWGG | 2 cut(s) | 1681, 2024 |
| Bst4CI | ACNGT | 5 cut(s) | 502, 694, 737, 1006, 1124 |
| Bst6I | CTCTTC | 5 cut(s) | 193, 457, 1052, 1102, 1416 |
| BstAUI | TGTACA | 1 cut(s) | 1528 |
| BstC8I | GCNNGC | 3 cut(s) | 1059, 1583, 1931 |
| BstDEI | CTNAG | 4 cut(s) | 194, 1247, 1712, 1730 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1856 |
| BstF5I | GGATG | 6 cut(s) | 47, 187, 388, 1997, 2080, 2102 |
| BstFNI | CGCG | 1 cut(s) | 146 |
| BstH2I | RGCGCY | 1 cut(s) | 1001 |
| BstHHI | GCGC | 1 cut(s) | 1000 |
| BstKTI | GATC | 8 cut(s) | 252, 318, 376, 537, 867, 928, 937, 1457 |
| BstMAI | GTCTC | 4 cut(s) | 184, 1418, 1536, 2098 |
| BstMBI | GATC | 8 cut(s) | 249, 315, 373, 534, 864, 925, 934, 1454 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 995, 1582 |
| BstNI | CCWGG | 2 cut(s) | 1681, 2024 |
| BstNSI | RCATGY | 2 cut(s) | 1061, 1645 |
| BstSCI | CCNGG | 5 cut(s) | 976, 1679, 2022, 2069, 2070 |
| BstSFI | CTRYAG | 2 cut(s) | 538, 2004 |
| BstUI | CGCG | 1 cut(s) | 146 |
| BstV1I | GCAGC | 1 cut(s) | 1820 |
| BstV2I | GAAGAC | 2 cut(s) | 256, 1092 |
| BstX2I | RGATCY | 3 cut(s) | 249, 534, 1454 |
| BstYI | RGATCY | 3 cut(s) | 249, 534, 1454 |
| BsuRI | GGCC | 1 cut(s) | 2046 |
| BtrI | CACGTC | 1 cut(s) | 88 |
| BtsCI | GGATG | 6 cut(s) | 47, 187, 388, 1997, 2080, 2102 |
| BtsIMutI | CAGTG | 6 cut(s) | 335, 874, 1136, 1199, 1390, 1536 |
| Cac8I | GCNNGC | 3 cut(s) | 1059, 1583, 1931 |
| CciI | TCATGA | 2 cut(s) | 724, 928 |
| CfoI | GCGC | 1 cut(s) | 1000 |
| Cfr10I | RCCGGY | 1 cut(s) | 841 |
| Cfr13I | GGNCC | 5 cut(s) | 123, 133, 974, 1849, 2113 |
| Cfr9I | CCCGGG | 1 cut(s) | 2070 |
| Csp6I | GTAC | 9 cut(s) | 446, 485, 902, 1476, 1529, 1648, 1661, 1994, 2087 |
| CspAI | ACCGGT | 1 cut(s) | 841 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1092, 1127 |
| CviQI | GTAC | 9 cut(s) | 446, 485, 902, 1476, 1529, 1648, 1661, 1994, 2087 |
| DdeI | CTNAG | 4 cut(s) | 194, 1247, 1712, 1730 |
| DpnI | GATC | 8 cut(s) | 251, 317, 375, 536, 866, 927, 936, 1456 |
| DpnII | GATC | 8 cut(s) | 249, 315, 373, 534, 864, 925, 934, 1454 |
| Eam1104I | CTCTTC | 5 cut(s) | 193, 457, 1052, 1102, 1416 |
| EarI | CTCTTC | 5 cut(s) | 193, 457, 1052, 1102, 1416 |
| Ecl136II | GAGCTC | 1 cut(s) | 1045 |
| Eco147I | AGGCCT | 1 cut(s) | 2046 |
| Eco24I | GRGCYC | 1 cut(s) | 1047 |
| Eco47I | GGWCC | 5 cut(s) | 123, 133, 974, 1849, 2113 |
| Eco53kI | GAGCTC | 1 cut(s) | 1045 |
| Eco57I | CTGAAG | 6 cut(s) | 1033, 1223, 1370, 1440, 1449, 2069 |
| Eco88I | CYCGRG | 2 cut(s) | 38, 2070 |
| EcoICRI | GAGCTC | 1 cut(s) | 1045 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1856 |
| EcoO109I | RGGNCCY | 3 cut(s) | 123, 1849, 2113 |
| EcoRI | GAATTC | 2 cut(s) | 1233, 2138 |
| EcoRII | CCWGG | 2 cut(s) | 1679, 2022 |
| EcoT22I | ATGCAT | 3 cut(s) | 949, 1452, 2102 |
| EcoT38I | GRGCYC | 1 cut(s) | 1047 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 779, 811, 792, 824, 870, 902, 1023, 1055 |
| FaqI | GGGAC | 3 cut(s) | 77, 2067, 2092 |
| FblI | GTMKAC | 2 cut(s) | 328, 576 |
| Fnu4HI | GCNGC | 3 cut(s) | 147, 1685, 1834 |
| FokI | GGATG | 6 cut(s) | 34, 194, 395, 1984, 2087, 2109 |
| FriOI | GRGCYC | 1 cut(s) | 1047 |
| Fsp4HI | GCNGC | 3 cut(s) | 147, 1685, 1834 |
| FspBI | CTAG | 7 cut(s) | 152, 435, 749, 995, 1628, 1811, 2117 |
| GlaI | GCGC | 1 cut(s) | 999 |
| GluI | GCNGC | 3 cut(s) | 147, 1685, 1834 |
| GsaI | CCCAGC | 1 cut(s) | 453 |
| GsuI | CTGGAG | 1 cut(s) | 1560 |
| HaeII | RGCGCY | 1 cut(s) | 1001 |
| HaeIII | GGCC | 1 cut(s) | 2046 |
| HapII | CCGG | 7 cut(s) | 11, 56, 162, 842, 977, 1856, 2071 |
| HhaI | GCGC | 1 cut(s) | 1000 |
| Hin6I | GCGC | 1 cut(s) | 998 |
| HinP1I | GCGC | 1 cut(s) | 998 |
| HincII | GTYRAC | 2 cut(s) | 529, 916 |
| HindII | GTYRAC | 2 cut(s) | 529, 916 |
| HindIII | AAGCTT | 1 cut(s) | 1255 |
| HpaII | CCGG | 7 cut(s) | 11, 56, 162, 842, 977, 1856, 2071 |
| HphI | GGTGA | 1 cut(s) | 1731 |
| Hpy166II | GTNNAC | 5 cut(s) | 329, 529, 577, 916, 1133 |
| Hpy188I | TCNGA | 8 cut(s) | 75, 104, 217, 382, 1250, 1319, 1459, 2144 |
| Hpy8I | GTNNAC | 5 cut(s) | 329, 529, 577, 916, 1133 |
| Hpy99I | CGWCG | 1 cut(s) | 89 |
| HpyAV | CCTTC | 8 cut(s) | 136, 387, 391, 1167, 1345, 1424, 1862, 2044 |
| HpyCH4III | ACNGT | 5 cut(s) | 502, 694, 737, 1006, 1124 |
| HpyCH4IV | ACGT | 3 cut(s) | 87, 173, 1399 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 995, 1582 |
| HpyF3I | CTNAG | 4 cut(s) | 194, 1247, 1712, 1730 |
| HpySE526I | ACGT | 3 cut(s) | 87, 173, 1399 |
| HspAI | GCGC | 1 cut(s) | 998 |
| Kpn2I | TCCGGA | 1 cut(s) | 1855 |
| Kzo9I | GATC | 8 cut(s) | 249, 315, 373, 534, 864, 925, 934, 1454 |
| LguI | GCTCTTC | 2 cut(s) | 457, 1052 |
| LmnI | GCTCC | 5 cut(s) | 13, 304, 1176, 1398, 1518 |
| Lsp1109I | GCAGC | 1 cut(s) | 1820 |
| LweI | GCATC | 3 cut(s) | 172, 1252, 2087 |
| MaeI | CTAG | 7 cut(s) | 152, 435, 749, 995, 1628, 1811, 2117 |
| MaeII | ACGT | 3 cut(s) | 87, 173, 1399 |
| MaeIII | GTNAC | 7 cut(s) | 6, 107, 502, 1013, 1114, 1307, 1408 |
| MalI | GATC | 8 cut(s) | 251, 317, 375, 536, 866, 927, 936, 1456 |
| MboI | GATC | 8 cut(s) | 249, 315, 373, 534, 864, 925, 934, 1454 |
| MfeI | CAATTG | 2 cut(s) | 938, 1266 |
| MflI | RGATCY | 3 cut(s) | 249, 534, 1454 |
| MhlI | GDGCHC | 1 cut(s) | 1047 |
| MlyI | GAGTC | 5 cut(s) | 174, 770, 1021, 1428, 1882 |
| MmeI | TCCRAC | 5 cut(s) | 565, 610, 637, 1420, 1540 |
| Mph1103I | ATGCAT | 3 cut(s) | 949, 1452, 2102 |
| MroI | TCCGGA | 1 cut(s) | 1855 |
| MroXI | GAANNNNTTC | 3 cut(s) | 592, 1218, 1289 |
| MseI | TTAA | 6 cut(s) | 824, 1568, 1614, 1707, 1827, 1884 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1319 |
| MspA1I | CMGCKG | 2 cut(s) | 453, 547 |
| MspI | CCGG | 7 cut(s) | 11, 56, 162, 842, 977, 1856, 2071 |
| MspR9I | CCNGG | 5 cut(s) | 978, 1681, 2024, 2071, 2072 |
| MunI | CAATTG | 2 cut(s) | 938, 1266 |
| Mva1269I | GAATGC | 1 cut(s) | 949 |
| MvaI | CCWGG | 2 cut(s) | 1681, 2024 |
| MvnI | CGCG | 1 cut(s) | 146 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 995, 1582 |
| NciI | CCSGG | 3 cut(s) | 978, 2071, 2072 |
| NdeII | GATC | 8 cut(s) | 249, 315, 373, 534, 864, 925, 934, 1454 |
| NlaIV | GGNNCC | 3 cut(s) | 15, 160, 2021 |
| NmeAIII | GCCGAG | 1 cut(s) | 211 |
| NmuCI | GTSAC | 2 cut(s) | 6, 1013 |
| NsiI | ATGCAT | 3 cut(s) | 949, 1452, 2102 |
| NspI | RCATGY | 2 cut(s) | 1061, 1645 |
| PaeI | GCATGC | 1 cut(s) | 1061 |
| PaeR7I | CTCGAG | 1 cut(s) | 38 |
| PagI | TCATGA | 2 cut(s) | 724, 928 |
| PceI | AGGCCT | 1 cut(s) | 2046 |
| PciSI | GCTCTTC | 2 cut(s) | 457, 1052 |
| PctI | GAATGC | 1 cut(s) | 949 |
| PdmI | GAANNNNTTC | 3 cut(s) | 592, 1218, 1289 |
| PfeI | GAWTC | 6 cut(s) | 284, 593, 678, 965, 1676, 1876 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 456, 1781 |
| PfoI | TCCNGGA | 1 cut(s) | 976 |
| PinAI | ACCGGT | 1 cut(s) | 841 |
| PkrI | GCNGC | 3 cut(s) | 148, 1686, 1835 |
| PleI | GAGTC | 5 cut(s) | 173, 770, 1020, 1428, 1882 |
| PpsI | GAGTC | 5 cut(s) | 173, 770, 1020, 1428, 1882 |
| PpuMI | RGGWCCY | 3 cut(s) | 123, 1849, 2113 |
| PsiI | TTATAA | 2 cut(s) | 1869, 1970 |
| Psp124BI | GAGCTC | 1 cut(s) | 1047 |
| Psp1406I | AACGTT | 1 cut(s) | 1399 |
| Psp5II | RGGWCCY | 3 cut(s) | 123, 1849, 2113 |
| Psp6I | CCWGG | 2 cut(s) | 1679, 2022 |
| PspFI | CCCAGC | 1 cut(s) | 449 |
| PspGI | CCWGG | 2 cut(s) | 1679, 2022 |
| PspN4I | GGNNCC | 3 cut(s) | 15, 160, 2021 |
| PspPI | GGNCC | 5 cut(s) | 123, 133, 974, 1849, 2113 |
| PspPPI | RGGWCCY | 3 cut(s) | 123, 1849, 2113 |
| PspXI | VCTCGAGB | 1 cut(s) | 38 |
| PstI | CTGCAG | 1 cut(s) | 542 |
| PsuI | RGATCY | 3 cut(s) | 249, 534, 1454 |
| PvuII | CAGCTG | 2 cut(s) | 453, 547 |
| RsaI | GTAC | 9 cut(s) | 447, 486, 903, 1477, 1530, 1649, 1662, 1995, 2088 |
| RsaNI | GTAC | 9 cut(s) | 446, 485, 902, 1476, 1529, 1648, 1661, 1994, 2087 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1319 |
| SacI | GAGCTC | 1 cut(s) | 1047 |
| SapI | GCTCTTC | 2 cut(s) | 457, 1052 |
| SaqAI | TTAA | 6 cut(s) | 824, 1568, 1614, 1707, 1827, 1884 |
| SatI | GCNGC | 3 cut(s) | 147, 1685, 1834 |
| Sau3AI | GATC | 8 cut(s) | 249, 315, 373, 534, 864, 925, 934, 1454 |
| Sau96I | GGNCC | 5 cut(s) | 123, 133, 974, 1849, 2113 |
| ScaI | AGTACT | 1 cut(s) | 486 |
| SchI | GAGTC | 5 cut(s) | 174, 770, 1021, 1428, 1882 |
| ScrFI | CCNGG | 5 cut(s) | 978, 1681, 2024, 2071, 2072 |
| SduI | GDGCHC | 1 cut(s) | 1047 |
| SfaNI | GCATC | 3 cut(s) | 172, 1252, 2087 |
| SfcI | CTRYAG | 2 cut(s) | 538, 2004 |
| Sfr274I | CTCGAG | 1 cut(s) | 38 |
| SinI | GGWCC | 5 cut(s) | 123, 133, 974, 1849, 2113 |
| SlaI | CTCGAG | 1 cut(s) | 38 |
| SmaI | CCCGGG | 1 cut(s) | 2072 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1319 |
| SmlI | CTYRAG | 7 cut(s) | 38, 94, 299, 1040, 1102, 1465, 1844 |
| SmoI | CTYRAG | 7 cut(s) | 38, 94, 299, 1040, 1102, 1465, 1844 |
| SpeI | ACTAGT | 1 cut(s) | 151 |
| SphI | GCATGC | 1 cut(s) | 1061 |
| SseBI | AGGCCT | 1 cut(s) | 2046 |
| SsiI | CCGC | 7 cut(s) | 146, 229, 281, 987, 1645, 1684, 2090 |
| SspMI | CTAG | 7 cut(s) | 152, 435, 749, 995, 1628, 1811, 2117 |
| SstI | GAGCTC | 1 cut(s) | 1047 |
| StuI | AGGCCT | 1 cut(s) | 2046 |
| StyD4I | CCNGG | 5 cut(s) | 976, 1679, 2022, 2069, 2070 |
| TaaI | ACNGT | 5 cut(s) | 502, 694, 737, 1006, 1124 |
| TaiI | ACGT | 3 cut(s) | 90, 176, 1402 |
| TaqI | TCGA | 6 cut(s) | 39, 1019, 1095, 1910, 2038, 2130 |
| TatI | WGTACW | 3 cut(s) | 484, 1475, 1528 |
| TauI | GCSGC | 2 cut(s) | 149, 1687 |
| TfiI | GAWTC | 6 cut(s) | 284, 593, 678, 965, 1676, 1876 |
| Tru1I | TTAA | 6 cut(s) | 824, 1568, 1614, 1707, 1827, 1884 |
| Tru9I | TTAA | 6 cut(s) | 824, 1568, 1614, 1707, 1827, 1884 |
| TscAI | CASTG | 6 cut(s) | 342, 874, 1143, 1206, 1390, 1543 |
| TseFI | GTSAC | 2 cut(s) | 6, 1013 |
| TseI | GCWGC | 1 cut(s) | 1833 |
| Tsp45I | GTSAC | 2 cut(s) | 6, 1013 |
| TspGWI | ACGGA | 1 cut(s) | 146 |
| TspMI | CCCGGG | 1 cut(s) | 2070 |
| TspRI | CASTG | 6 cut(s) | 342, 874, 1143, 1206, 1390, 1543 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 456, 1781 |
| VpaK11BI | GGWCC | 5 cut(s) | 123, 133, 974, 1849, 2113 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1856 |
| XceI | RCATGY | 2 cut(s) | 1061, 1645 |
| XhoI | CTCGAG | 1 cut(s) | 38 |
| XmaI | CCCGGG | 1 cut(s) | 2070 |
| XmiI | GTMKAC | 2 cut(s) | 328, 576 |
| XmnI | GAANNNNTTC | 3 cut(s) | 592, 1218, 1289 |
| XspI | CTAG | 7 cut(s) | 152, 435, 749, 995, 1628, 1811, 2117 |
| ZrmI | AGTACT | 1 cut(s) | 486 |
| Zsp2I | ATGCAT | 3 cut(s) | 949, 1452, 2102 |