MD16G1068300.v1.1

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
4786530 .. 4792081
5552 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1068300.v1.1.491

Sequence Viewer

Length: 1932 bp
ATGACAGCCCACGAAGCCTCCTCTTCATCCTCTTCTAAGTCAAAACTTTGGAATTACGACGTGTTCTTGAGCTTTAGCGGTGCAGACACGCGTAATGGCTTTACGGACCACCTCCACGCGGCATTAACAGACAGGGGATACCAGGCTTATATCGATCAAGACGATCTAAAAAGAGGGGAAGTAATAAAAGCAGAACTGTTCCGAGCAATTGAAGAGTCGAGAATCTCTATCATTATCTTCTCAAAAAGTTATGCAGATTCAACTTGGTGTCTTGACGAGCTTGTGAAGATCATGGAGTGCAGATCCAAACTGGGGCGACATGTTTTGCCAATATTCTATCATGTTGATCCTTCGCATGTCAGGAAGCAGTACGGAGATTTAGCCGAAACATTCCAGAAGCACGAAGATGGCATCGGTGAAGAAAAAGATGACAAGAACCGTGAATTTAAACAAGAAATGGTAAAGCAGTGGAGAAAGGCTCTTACAGAAGCTGCAAATTTGGCTGGCCACCATCTTCAAATCACTGACAATAGGCGTGAAGCAAAGCTTATTAGAGAAATTATTGACAAGATTACAGAATGGCTTCCAAGCGCAAACAAATTACATGTGGCCAAGCACCAAGTTGGAATTAGTTCTCGCATTCAAGATGTTATCAGGCATCTTTTAAGCGGTGGATCAAATGAAGTTGTCATGGTTGGAGTTTGGGGGATGGGTGGGCTGGGTAAAACAACAGCTGCCAAAGCCATTTATAACCAGGTTTATCATAAGTTTGAATTCAAAAGTTTCCTTACCGACGTTAGTGACACTGGAAATAAACATGGTATGGTTCATTTGCAAGAAAAACTTATTTTTGACATCTTGAAAAAGAAGTCTCAAATAAGCAGTGTTGATGGAGGTATCAGTCTGATAAAACAACATTTTCAATATAGAAGGGTACTTGTCATCATTGACAACGTAGATGAAGTGGAACAACTAAATGCAATAGCTGGAAATCATGATTGGTTTGGTCCAGGAAGTAGAATTATCATAACGACACGAGATGAACATTTGCTAAAGCAAGTGGATAAGACATATCCGGCTCAGAAATTGAATAAAGAAGAAGCTCTGGAGCTCCTTAGTTGGCATGCATTTGGAAATAGTTATCCGAATGAAGGATATCTTGAACTCTCACAAAAGGTTGTTTCTTACTGTGGAGGTTTGCCACTAGCTCTTGAAGTTTTAGGTTCTTTTTTAAATAAAAGAACCATAGCAGAGTGGAAAAGTCAATTGGAGAAATTGGAAAAAACTCCTTACGAAAAAATAGTAAAACCATTAAGAATAAGTTTTGATGGGCTAGATGATACACAAAAGGCTATCTTCCTTGACATAGCTTGTTTCTTTATTGGATGGGACAAGGACTATGTCGCAAAAGTATTCGACGGGTGTGATTTTTTTCCTACAATAGGAATTAACGTCCTTCGTGAACAATGCCTTGTAACTATTGAAGACAATGAGTTGAATATGCATGATTTGCTTCAAGAAATGGCTAGAGTAATTATTTCTGAAAAATCCCCTGGTCACCCTGAAAAATGGAGTAGGTTGTGGAATCCTCAAGAGGTCACCAACGTCTTGGAAAATGAATTTGGAACTGAAGAAGTTGAAGGACTTGCTCTAGATAATTCTTTTTCTCATGACAAGTCGAGTTTCAGTACAGAAGCATTTGCCAAAATGAAGAAACTGAGATTGCTTCAGCTCAACAACGTAAAGCTCAATGGAGAATACAAACATCTTCCCAAAGAGTTAGTGTGGTTGTGCTGGCATAGATTCCCTTTAGAGTCCATACCAGATGACTTTTTTAATCAACCAAGACTAGTTGTTTTAGAGATGCAGTATAGCCAACTGGTACAACTTTGGGAGGGTTCCAAGGTACGTACAATCAATTACACATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

644

Amino Acids

73.81

Weight (kDa)

6.14

Isoelectric Point (pI)

35.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 18 - 199 2.6e-50 TIR domain
TIR_2 PF13676 21 - 135 2.5e-18 TIR domain
NB-ARC PF00931 213 - 379 2.3e-18 NB-ARC domain
WHD_ROQ1 PF23282 448 - 517 2.2e-15 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36930 AT5G36930 AT5G36930 AT5G36930
fragaria_vesca FvH4_3g45361 FvH4_3g45380 FvH4_5g21061 FvH4_5g21062 FvH4_5g21063 FvH4_5g32050 FvH4_5g32970 FvH4_5g32990 FvH4_5g34190 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34211 FvH4_5g34240 FvH4_5g34250
malus_domestica MD00G1011700.v1.1 MD00G1026100.v1.1 MD00G1026500.v1.1 MD00G1027000.v1.1 MD00G1027100.v1.1 MD00G1027700.v1.1 MD00G1027800.v1.1 MD00G1028000.v1.1 MD00G1220000.v1.1 MD02G1024400.v1.1 MD02G1024800.v1.1 MD02G1026000.v1.1 MD02G1026100.v1.1 MD02G1031800.v1.1 MD02G1038500.v1.1 MD02G1038700.v1.1 MD02G1039200.v1.1 MD02G1040600.v1.1 MD02G1040900.v1.1 MD02G1041200.v1.1 MD02G1041300.v1.1 MD02G1041700.v1.1 MD02G1042000.v1.1 MD02G1043800.v1.1 MD02G1043900.v1.1 MD02G1044300.v1.1 MD02G1045200.v1.1 MD02G1045300.v1.1 MD02G1051200.v1.1 MD02G1052200.v1.1 MD02G1052800.v1.1 MD02G1053100.v1.1 MD02G1053600.v1.1 MD02G1055500.v1.1 MD02G1063300.v1.1 MD02G1063400.v1.1 MD02G1063800.v1.1 MD02G1306500.v1.1 MD02G1306600.v1.1 MD02G1306700.v1.1 MD02G1306900.v1.1 MD02G1307200.v1.1 MD04G1011700.v1.1 MD05G1315400.v1.1 MD05G1316000.v1.1 MD05G1316700.v1.1 MD05G1317000.v1.1 MD05G1317300.v1.1 MD05G1317600.v1.1 MD05G1317700.v1.1 MD07G1102800.v1.1 MD07G1238200.v1.1 MD08G1175900.v1.1 MD08G1203600.v1.1 MD09G1024200.v1.1 MD09G1039600.v1.1 MD09G1044800.v1.1 MD09G1045100.v1.1 MD10G1038700.v1.1 MD10G1039000.v1.1 MD10G1039200.v1.1 MD10G1040000.v1.1 MD10G1040200.v1.1 MD10G1040600.v1.1 MD10G1040800.v1.1 MD10G1297300.v1.1 MD12G1247500.v1.1 MD12G1247900.v1.1 MD12G1248300.v1.1 MD12G1248800.v1.1 MD15G1103700.v1.1 MD15G1103800.v1.1 MD15G1104000.v1.1 MD15G1179600.v1.1 MD15G1182500.v1.1 MD16G1068200.v1.1 MD16G1068300.v1.1 MD17G1024600.v1.1 MD17G1024700.v1.1 MD17G1025000.v1.1 MD17G1025900.v1.1
prunus_persica Prupe.1G539800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G557100_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557300_v2.0.a1
pyrus_communis pycom02g02080 pycom02g02090 pycom02g02110 pycom02g03220 pycom02g03260 pycom02g03370 pycom02g03390 pycom02g03410 pycom02g03420 pycom02g03450 pycom02g03500 pycom02g03730 pycom02g03770 pycom02g04400 pycom02g04410 pycom02g04430 pycom02g04450 pycom02g04460 pycom02g04490 pycom02g05200 pycom02g25710 pycom02g25750 pycom02g25790 pycom02g25810 pycom02g25830 pycom04g00920 pycom04g00930 pycom04g00940 pycom05g29300 pycom05g29310 pycom05g29380 pycom05g29410 pycom07g06310 pycom07g21420 pycom08g15070 pycom08g17540 pycom08g17560 pycom08g17570 pycom10g02670 pycom10g02680 pycom10g02700 pycom10g02770 pycom10g02790 pycom10g02800 pycom10g02810 pycom10g25020 pycom10g25030 pycom10g25050 pycom10g25080 pycom111g01990 pycom111g02000 pycom111g02030 pycom111g02040 pycom111g02050 pycom111g02060 pycom12g22710 pycom12g22720 pycom12g22730 pycom12g22740 pycom12g22750 pycom12g22770 pycom12g22780 pycom12g22790 pycom12g22800 pycom12g22810 pycom12g22830 pycom12g22840 pycom12g22860 pycom15g09440 pycom15g09480 pycom15g16120 pycom15g32380 pycom16g05970 pycom17g02100
rosa_chinensis RchiOBHm_Chr2g0144661 RchiOBHm_Chr4g0407491 RchiOBHm_Chr4g0407501 RchiOBHm_Chr4g0412381 RchiOBHm_Chr7g0208191 RchiOBHm_Chr7g0208201 RchiOBHm_Chr7g0208211 RchiOBHm_Chr7g0208221 RchiOBHm_Chr7g0228071 RchiOBHm_Chr7g0228121 RchiOBHm_Chr7g0230971 RchiOBHm_Chr7g0230981 RchiOBHm_Chr7g0233901 RchiOBHm_Chr7g0233951 RchiOBHm_Chr7g0233961 RchiOBHm_Chr7g0233991 RchiOBHm_Chr7g0234021 RchiOBHm_Chr7g0234151 RchiOBHm_Chr7g0234161 RchiOBHm_Chr7g0234241 RchiOBHm_Chr7g0234501 RchiOBHm_Chr7g0234641 RchiOBHm_Chr7g0234771 RchiOBHm_Chr7g0234781 RchiOBHm_Chr7g0234991 RchiOBHm_Chr7g0241291 RchiOBHm_Chr7g0241301
rosa_laevigata RLG00000001186 RLG00000001187 RLG00000001212 RLG00000001226 RLG00000001233 RLG00000001590 RLG00000003242 RLG00000003243 RLG00000003249 RLG00000008688 RLG00000008690
rosa_multiflora Rmu_co7966574.1_g000001 Rmu_co8120830.1_g000001 Rmu_co8142226.1_g000001 Rmu_co8293083.1_g000001 Rmu_co8351227.1_g000001 Rmu_co8380159.1_g000001 Rmu_co8456505.1_g000001 Rmu_sc0000676.1_g000025 Rmu_sc0000706.1_g000018 Rmu_sc0000706.1_g000040 Rmu_sc0000740.1_g000029 Rmu_sc0000740.1_g000032 Rmu_sc0000740.1_g000037 Rmu_sc0000740.1_g000040 Rmu_sc0000762.1_g000003 Rmu_sc0000762.1_g000019 Rmu_sc0000762.1_g000034 Rmu_sc0000762.1_g000069 Rmu_sc0000892.1_g000001 Rmu_sc0000945.1_g000040 Rmu_sc0001913.1_g000037 Rmu_sc0001913.1_g000041 Rmu_sc0001913.1_g000049 Rmu_sc0002775.1_g000017 Rmu_sc0002775.1_g000018 Rmu_sc0002775.1_g000020 Rmu_sc0002775.1_g000021 Rmu_sc0002775.1_g000022 Rmu_sc0002775.1_g000025 Rmu_sc0002775.1_g000026 Rmu_sc0002775.1_g000028 Rmu_sc0002775.1_g000030 Rmu_sc0004858.1_g000002 Rmu_sc0004864.1_g000022 Rmu_sc0005038.1_g000023 Rmu_sc0005840.1_g000014 Rmu_sc0006724.1_g000003 Rmu_sc0006824.1_g000005 Rmu_sc0007869.1_g000003 Rmu_sc0007869.1_g000005 Rmu_sc0007869.1_g000008 Rmu_sc0008646.1_g000007 Rmu_sc0009637.1_g000009 Rmu_sc0010500.1_g000002 Rmu_sc0010500.1_g000012 Rmu_sc0012403.1_g000025 Rmu_sc0013768.1_g000025 Rmu_sc0015625.1_g000001 Rmu_sc0019715.1_g000001 Rmu_sc0021133.1_g000002 Rmu_sc0021904.1_g000001 Rmu_sc0021904.1_g000003 Rmu_sc0021904.1_g000004 Rmu_sc0022054.1_g000001 Rmu_sc0026025.1_g000001 Rmu_sc0036828.1_g000002 Rmu_sc0041808.1_g000001 Rmu_ssc0000012.1_g000001
rosa_roxburghii Rroxscaffold_3G00226370 Rroxscaffold_3G00226860 Rroxscaffold_3G00226900 Rroxscaffold_3G00226930 Rroxscaffold_3G00226940 Rroxscaffold_3G00226970 Rroxscaffold_3G00226980 Rroxscaffold_3G00231530 Rroxscaffold_3G00237090 Rroxscaffold_3G00250760 Rroxscaffold_3G00250800
rosa_rugosa Rorug04G0082300 Rorug07G0101800 Rorug07G0102000 Rorug07G0102100 Rorug07G0221200 Rorug07G0245700 Rorug07G0245700 Rorug07G0245700 Rorug07G0263900 Rorug07G0264000 Rorug07G0264000 Rorug07G0264500 Rorug07G0282900 Rorug07G0282900 Rorug07G0283100 Rorug07G0283200.1 Rorug07G0283300 Rorug07G0283900 Rorug07G0284000 Rorug07G0284100 Rorug07G0284300 Rorug07G0284400 Rorug07G0284500 Rorug07G0285000 Rorug07G0285200 Rorug07G0285300 Rorug07G0285500 Rorug07G0286800 Rorug07G0286900 Rorug07G0287100 Rorug07G0287200
rosa_samantha Rh7AG236100 Rh7AG236200 Rh7AG236300 Rh7AG440000 Rh7AG440100 Rh7BG411900 Rh7BG412000 Rh7BG412600 Rh7CG251300 Rh7CG417700 Rh7CG460100 Rh7DG242100 Rh7DG242200 Rh7DG242300 Rh7DG429300
rosa_wichuraiana Rw0G005070 Rw0G010780 Rw0G012530 Rw7G020110 Rw7G020160 Rw7G020170 Rw7G033210 Rw7G033230 Rw7G033250 Rw7G034540 Rw7G035150 Rw7G036190 Rw7G036210 Rw7G036260 Rw7G036270 Rw7G036290 Rw7G036300 Rw7G036310 Rw7G036350 Rw7G036360 Rw7G036440 Rw7G036510 Rw7G036530 Rw7G036570 Rw7G036590 Rw7G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 750
AccII CGCG 2 cut(s) 91, 119
AciI CCGC 3 cut(s) 78, 119, 669
AclWI GGATC 3 cut(s) 297, 341, 682
AcoI YGGCCR 2 cut(s) 505, 609
AcsI RAATTY 4 cut(s) 443, 496, 773, 1619
AcuI CTGAAG 2 cut(s) 1650, 1712
AfaI GTAC 6 cut(s) 371, 936, 1690, 1884, 1908, 1912
AfiI CCNNNNNNNGG 4 cut(s) 118, 312, 1151, 1442
AflIII ACRYGT 4 cut(s) 60, 89, 319, 604
AhlI ACTAGT 1 cut(s) 1849
AjiI CACGTC 1 cut(s) 61
AjnI CCWGG 4 cut(s) 141, 753, 1009, 1552
AjuI GAANNNNNNNTTGG 6 cut(s) 982, 1014, 1250, 1282, 1605, 1637
Alw21I GWGCWC 1 cut(s) 1113
Alw26I GTCTC 1 cut(s) 876
AlwI GGATC 3 cut(s) 297, 341, 682
AlwNI CAGNNNCTG 1 cut(s) 491
AoxI GGCC 2 cut(s) 505, 609
ApeKI GCWGC 2 cut(s) 491, 734
ApoI RAATTY 4 cut(s) 443, 496, 773, 1619
Asp700I GAANNNNTTC 2 cut(s) 582, 631
AspLEI GCGC 1 cut(s) 593
AspS9I GGNCC 2 cut(s) 106, 1007
AsuHPI GGTGA 3 cut(s) 428, 1550, 1591
AvaII GGWCC 2 cut(s) 106, 1007
BalI TGGCCA 2 cut(s) 507, 611
BanII GRGCYC 1 cut(s) 1113
BauI CACGAG 1 cut(s) 1035
BbsI GAAGAC 1 cut(s) 1491
Bbv12I GWGCWC 1 cut(s) 1113
BbvI GCAGC 2 cut(s) 478, 721
BccI CCATC 6 cut(s) 401, 519, 703, 884, 1322, 1380
BciT130I CCWGG 4 cut(s) 143, 755, 1011, 1554
BciVI GTATCC 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 876
BcuI ACTAGT 1 cut(s) 1849
BfaI CTAG 5 cut(s) 1205, 1334, 1527, 1652, 1850
BfuI GTATCC 1 cut(s) 131
BisI GCNGC 3 cut(s) 120, 492, 735
BlsI GCNGC 3 cut(s) 121, 493, 736
Bme1390I CCNGG 4 cut(s) 143, 755, 1011, 1554
Bme18I GGWCC 2 cut(s) 106, 1007
BmgBI CACGTC 1 cut(s) 61
BmgT120I GGNCC 2 cut(s) 106, 1007
BmiI GGNNCC 1 cut(s) 1900
BmrFI CCNGG 4 cut(s) 143, 755, 1011, 1554
BmrI ACTGGG 1 cut(s) 320
BmsI GCATC 3 cut(s) 420, 667, 1854
BmuI ACTGGG 1 cut(s) 320
BpiI GAAGAC 1 cut(s) 1491
BplI GAGNNNNNCTC 2 cut(s) 463, 495
BpmI CTGGAG 1 cut(s) 1127
BpuEI CTTGAG 2 cut(s) 88, 1575
Bsa29I ATCGAT 1 cut(s) 153
BsaAI YACGTR 1 cut(s) 1910
BsaJI CCNNGG 2 cut(s) 1552, 1902
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 4 cut(s) 118, 312, 1151, 1442
Bse1I ACTGG 3 cut(s) 315, 811, 1884
BseBI CCWGG 4 cut(s) 143, 755, 1011, 1554
BseCI ATCGAT 1 cut(s) 153
BseDI CCNNGG 2 cut(s) 1552, 1902
BseGI GGATG 3 cut(s) 26, 714, 1391
BseLI CCNNNNNNNGG 4 cut(s) 118, 312, 1151, 1442
BseMII CTCAG 2 cut(s) 1094, 1709
BseNI ACTGG 3 cut(s) 315, 811, 1884
BseRI GAGGAG 1 cut(s) 10
BseXI GCAGC 2 cut(s) 478, 721
BseYI CCCAGC 1 cut(s) 718
BsgI GTGCAG 2 cut(s) 102, 319
Bsh1236I CGCG 2 cut(s) 91, 119
BshFI GGCC 2 cut(s) 507, 611
BshVI ATCGAT 1 cut(s) 153
BsiHKAI GWGCWC 1 cut(s) 1113
BsiSI CCGG 1 cut(s) 1076
BslFI GGGAC 1 cut(s) 1403
BslI CCNNNNNNNGG 4 cut(s) 118, 312, 1151, 1442
BsmAI GTCTC 1 cut(s) 876
BsmFI GGGAC 1 cut(s) 1403
BsmI GAATGC 1 cut(s) 639
BsnI GGCC 2 cut(s) 507, 611
Bsp1286I GDGCHC 1 cut(s) 1113
Bsp143I GATC 6 cut(s) 154, 163, 288, 302, 346, 674
BspACI CCGC 3 cut(s) 78, 119, 669
BspANI GGCC 2 cut(s) 507, 611
BspCNI CTCAG 2 cut(s) 1093, 1710
BspDI ATCGAT 1 cut(s) 153
BspFNI CGCG 2 cut(s) 91, 119
BspHI TCATGA 2 cut(s) 994, 1669
BspLI GGNNCC 1 cut(s) 1900
BspPI GGATC 3 cut(s) 297, 341, 682
BsrI ACTGG 3 cut(s) 315, 811, 1884
BssECI CCNNGG 2 cut(s) 1552, 1902
BssMI GATC 6 cut(s) 154, 163, 288, 302, 346, 674
BssSI CACGAG 1 cut(s) 1035
BssT1I CCWWGG 1 cut(s) 1902
Bst2BI CACGAG 1 cut(s) 1035
Bst2UI CCWGG 4 cut(s) 143, 755, 1011, 1554
Bst4CI ACNGT 3 cut(s) 198, 440, 1190
Bst6I CTCTTC 3 cut(s) 28, 37, 207
BstAPI GCANNNNNTGC 1 cut(s) 1510
BstBAI YACGTR 1 cut(s) 1910
BstC8I GCNNGC 3 cut(s) 505, 1125, 1796
BstDEI CTNAG 4 cut(s) 36, 1080, 1115, 1718
BstEII GGTNACC 2 cut(s) 1556, 1597
BstENI CCTNNNNNAGG 1 cut(s) 1440
BstF5I GGATG 3 cut(s) 26, 714, 1391
BstFNI CGCG 2 cut(s) 91, 119
BstHHI GCGC 1 cut(s) 593
BstKTI GATC 6 cut(s) 157, 166, 291, 305, 349, 677
BstMAI GTCTC 1 cut(s) 876
BstMBI GATC 6 cut(s) 154, 163, 288, 302, 346, 674
BstMWI GCNNNNNNNGC 4 cut(s) 14, 500, 740, 1510
BstNI CCWGG 4 cut(s) 143, 755, 1011, 1554
BstNSI RCATGY 4 cut(s) 323, 359, 608, 1127
BstPI GGTNACC 2 cut(s) 1556, 1597
BstSCI CCNGG 4 cut(s) 141, 753, 1009, 1552
BstSNI TACGTA 1 cut(s) 1910
BstUI CGCG 2 cut(s) 91, 119
BstV1I GCAGC 2 cut(s) 478, 721
BstV2I GAAGAC 1 cut(s) 1491
BstX2I RGATCY 1 cut(s) 302
BstXI CCANNNNNNTGG 1 cut(s) 1609
BstYI RGATCY 1 cut(s) 302
Bsu15I ATCGAT 1 cut(s) 153
BsuI GTATCC 1 cut(s) 131
BsuRI GGCC 2 cut(s) 507, 611
BsuTUI ATCGAT 1 cut(s) 153
BtrI CACGTC 1 cut(s) 61
BtsCI GGATG 3 cut(s) 26, 714, 1391
BtsI GCAGTG 2 cut(s) 473, 889
BtsIMutI CAGTG 4 cut(s) 473, 522, 804, 889
Cac8I GCNNGC 3 cut(s) 505, 1125, 1796
CaiI CAGNNNCTG 1 cut(s) 491
CciI TCATGA 2 cut(s) 994, 1669
CfoI GCGC 1 cut(s) 593
Cfr13I GGNCC 2 cut(s) 106, 1007
ClaI ATCGAT 1 cut(s) 153
CsiI ACCWGGT 1 cut(s) 753
Csp6I GTAC 6 cut(s) 370, 935, 1689, 1883, 1907, 1911
CviQI GTAC 6 cut(s) 370, 935, 1689, 1883, 1907, 1911
DdeI CTNAG 4 cut(s) 36, 1080, 1115, 1718
DpnI GATC 6 cut(s) 156, 165, 290, 304, 348, 676
DpnII GATC 6 cut(s) 154, 163, 288, 302, 346, 674
DraI TTTAAA 2 cut(s) 448, 1233
EaeI YGGCCR 2 cut(s) 505, 609
Eam1104I CTCTTC 3 cut(s) 28, 37, 207
EarI CTCTTC 3 cut(s) 28, 37, 207
Ecl136II GAGCTC 1 cut(s) 1111
Eco105I TACGTA 1 cut(s) 1910
Eco130I CCWWGG 1 cut(s) 1902
Eco24I GRGCYC 1 cut(s) 1113
Eco32I GATATC 1 cut(s) 1157
Eco47I GGWCC 2 cut(s) 106, 1007
Eco53kI GAGCTC 1 cut(s) 1111
Eco57I CTGAAG 2 cut(s) 1650, 1712
Eco91I GGTNACC 2 cut(s) 1556, 1597
EcoICRI GAGCTC 1 cut(s) 1111
EcoNI CCTNNNNNAGG 1 cut(s) 1440
EcoO65I GGTNACC 2 cut(s) 1556, 1597
EcoRI GAATTC 1 cut(s) 773
EcoRII CCWGG 4 cut(s) 141, 753, 1009, 1552
EcoRV GATATC 1 cut(s) 1157
EcoT14I CCWWGG 1 cut(s) 1902
EcoT22I ATGCAT 2 cut(s) 1129, 1506
EcoT38I GRGCYC 1 cut(s) 1113
ErhI CCWWGG 1 cut(s) 1902
FalI AAGNNNNNCTT 8 cut(s) 531, 563, 828, 860, 1143, 1175, 1340, 1372
FaqI GGGAC 1 cut(s) 1403
Fnu4HI GCNGC 3 cut(s) 120, 492, 735
FokI GGATG 3 cut(s) 13, 721, 1398
FriOI GRGCYC 1 cut(s) 1113
Fsp4HI GCNGC 3 cut(s) 120, 492, 735
FspBI CTAG 5 cut(s) 1205, 1334, 1527, 1652, 1850
GlaI GCGC 1 cut(s) 592
GluI GCNGC 3 cut(s) 120, 492, 735
GsaI CCCAGC 1 cut(s) 722
GsuI CTGGAG 1 cut(s) 1127
HaeIII GGCC 2 cut(s) 507, 611
HapII CCGG 1 cut(s) 1076
HhaI GCGC 1 cut(s) 593
Hin6I GCGC 1 cut(s) 591
HinP1I GCGC 1 cut(s) 591
HindIII AAGCTT 1 cut(s) 545
HinfI GANTC 6 cut(s) 215, 222, 257, 1585, 1803, 1814
HpaII CCGG 1 cut(s) 1076
HphI GGTGA 3 cut(s) 428, 1550, 1591
Hpy166II GTNNAC 1 cut(s) 1463
Hpy188I TCNGA 5 cut(s) 203, 906, 1083, 1146, 1543
Hpy8I GTNNAC 1 cut(s) 1463
Hpy99I CGWCG 3 cut(s) 62, 797, 1421
HpyAV CCTTC 5 cut(s) 360, 924, 1145, 1466, 1634
HpyCH4III ACNGT 3 cut(s) 198, 440, 1190
HpyCH4IV ACGT 7 cut(s) 60, 795, 954, 1452, 1605, 1740, 1909
HpyCH4V TGCA 9 cut(s) 83, 254, 300, 494, 835, 980, 1127, 1504, 1867
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 500, 740, 1510
HpyF3I CTNAG 4 cut(s) 36, 1080, 1115, 1718
HpySE526I ACGT 7 cut(s) 60, 795, 954, 1452, 1605, 1740, 1909
HspAI GCGC 1 cut(s) 591
Kzo9I GATC 6 cut(s) 154, 163, 288, 302, 346, 674
LmnI GCTCC 2 cut(s) 1108, 1116
Lsp1109I GCAGC 2 cut(s) 478, 721
LweI GCATC 3 cut(s) 420, 667, 1854
MabI ACCWGGT 1 cut(s) 753
MaeI CTAG 5 cut(s) 1205, 1334, 1527, 1652, 1850
MaeII ACGT 7 cut(s) 60, 795, 954, 1452, 1605, 1740, 1909
MaeIII GTNAC 4 cut(s) 800, 1474, 1556, 1597
MalI GATC 6 cut(s) 156, 165, 290, 304, 348, 676
MboI GATC 6 cut(s) 154, 163, 288, 302, 346, 674
MfeI CAATTG 2 cut(s) 207, 1265
MflI RGATCY 1 cut(s) 302
MhlI GDGCHC 1 cut(s) 1113
MlsI TGGCCA 2 cut(s) 507, 611
MluI ACGCGT 1 cut(s) 89
MluNI TGGCCA 2 cut(s) 507, 611
MlyI GAGTC 2 cut(s) 224, 1823
MmeI TCCRAC 2 cut(s) 604, 676
Mox20I TGGCCA 2 cut(s) 507, 611
Mph1103I ATGCAT 2 cut(s) 1129, 1506
MroXI GAANNNNTTC 2 cut(s) 582, 631
MscI TGGCCA 2 cut(s) 507, 611
MseI TTAA 7 cut(s) 125, 447, 665, 1232, 1313, 1449, 1836
MslI CAYNNNNRTG 1 cut(s) 405
Msp20I TGGCCA 2 cut(s) 507, 611
MspA1I CMGCKG 1 cut(s) 734
MspI CCGG 1 cut(s) 1076
MspR9I CCNGG 4 cut(s) 143, 755, 1011, 1554
MunI CAATTG 2 cut(s) 207, 1265
Mva1269I GAATGC 1 cut(s) 639
MvaI CCWGG 4 cut(s) 143, 755, 1011, 1554
MvnI CGCG 2 cut(s) 91, 119
MwoI GCNNNNNNNGC 4 cut(s) 14, 500, 740, 1510
NdeII GATC 6 cut(s) 154, 163, 288, 302, 346, 674
NlaIV GGNNCC 1 cut(s) 1900
NmuCI GTSAC 3 cut(s) 800, 1556, 1597
NsiI ATGCAT 2 cut(s) 1129, 1506
NspI RCATGY 4 cut(s) 323, 359, 608, 1127
PaeI GCATGC 1 cut(s) 1127
PagI TCATGA 2 cut(s) 994, 1669
PciI ACATGT 2 cut(s) 319, 604
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PctI GAATGC 1 cut(s) 639
PdmI GAANNNNTTC 2 cut(s) 582, 631
PfeI GAWTC 4 cut(s) 222, 257, 1585, 1803
PflFI GACNNNGTC 1 cut(s) 1400
PfoI TCCNGGA 1 cut(s) 1009
PkrI GCNGC 3 cut(s) 121, 493, 736
PleI GAGTC 2 cut(s) 223, 1822
PpsI GAGTC 2 cut(s) 223, 1822
Ppu21I YACGTR 1 cut(s) 1910
PscI ACATGT 2 cut(s) 319, 604
PsiI TTATAA 1 cut(s) 750
Psp124BI GAGCTC 1 cut(s) 1113
Psp6I CCWGG 4 cut(s) 141, 753, 1009, 1552
PspEI GGTNACC 2 cut(s) 1556, 1597
PspFI CCCAGC 1 cut(s) 718
PspGI CCWGG 4 cut(s) 141, 753, 1009, 1552
PspN4I GGNNCC 1 cut(s) 1900
PspPI GGNCC 2 cut(s) 106, 1007
PstNI CAGNNNCTG 1 cut(s) 491
PsuI RGATCY 1 cut(s) 302
PsyI GACNNNGTC 1 cut(s) 1400
PvuII CAGCTG 1 cut(s) 734
RsaI GTAC 6 cut(s) 371, 936, 1690, 1884, 1908, 1912
RsaNI GTAC 6 cut(s) 370, 935, 1689, 1883, 1907, 1911
RseI CAYNNNNRTG 1 cut(s) 405
SacI GAGCTC 1 cut(s) 1113
SaqAI TTAA 7 cut(s) 125, 447, 665, 1232, 1313, 1449, 1836
SatI GCNGC 3 cut(s) 120, 492, 735
Sau3AI GATC 6 cut(s) 154, 163, 288, 302, 346, 674
Sau96I GGNCC 2 cut(s) 106, 1007
SchI GAGTC 2 cut(s) 224, 1823
ScrFI CCNGG 4 cut(s) 143, 755, 1011, 1554
SduI GDGCHC 1 cut(s) 1113
SexAI ACCWGGT 1 cut(s) 753
SfaNI GCATC 3 cut(s) 420, 667, 1854
SinI GGWCC 2 cut(s) 106, 1007
SmiMI CAYNNNNRTG 1 cut(s) 405
SmlI CTYRAG 2 cut(s) 67, 1590
SmoI CTYRAG 2 cut(s) 67, 1590
SnaBI TACGTA 1 cut(s) 1910
SpeI ACTAGT 1 cut(s) 1849
SphI GCATGC 1 cut(s) 1127
SsiI CCGC 3 cut(s) 78, 119, 669
SspI AATATT 1 cut(s) 333
SspMI CTAG 5 cut(s) 1205, 1334, 1527, 1652, 1850
SstI GAGCTC 1 cut(s) 1113
StyD4I CCNGG 4 cut(s) 141, 753, 1009, 1552
StyI CCWWGG 1 cut(s) 1902
TaaI ACNGT 3 cut(s) 198, 440, 1190
TaiI ACGT 7 cut(s) 63, 798, 957, 1455, 1608, 1743, 1912
TaqI TCGA 4 cut(s) 153, 218, 1416, 1679
TatI WGTACW 1 cut(s) 1688
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 4 cut(s) 222, 257, 1585, 1803
Tru1I TTAA 7 cut(s) 125, 447, 665, 1232, 1313, 1449, 1836
Tru9I TTAA 7 cut(s) 125, 447, 665, 1232, 1313, 1449, 1836
TscAI CASTG 4 cut(s) 473, 529, 811, 889
TseFI GTSAC 3 cut(s) 800, 1556, 1597
TseI GCWGC 2 cut(s) 491, 734
Tsp45I GTSAC 3 cut(s) 800, 1556, 1597
TspDTI ATGAA 8 cut(s) 15, 696, 818, 975, 1056, 1164, 1632, 1724
TspGWI ACGGA 2 cut(s) 119, 387
TspRI CASTG 4 cut(s) 473, 529, 811, 889
Tth111I GACNNNGTC 1 cut(s) 1400
VpaK11BI GGWCC 2 cut(s) 106, 1007
XagI CCTNNNNNAGG 1 cut(s) 1440
XapI RAATTY 4 cut(s) 443, 496, 773, 1619
XbaI TCTAGA 1 cut(s) 1651
XceI RCATGY 4 cut(s) 323, 359, 608, 1127
XmnI GAANNNNTTC 2 cut(s) 582, 631
XspI CTAG 5 cut(s) 1205, 1334, 1527, 1652, 1850
Zsp2I ATGCAT 2 cut(s) 1129, 1506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.