TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 25 - 193 | 1e-51 | TIR domain |
| TIR_2 | PF13676 | 27 - 123 | 8.4e-16 | TIR domain |
| NB-ARC | PF00931 | 282 - 363 | 5e-09 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 434 - 490 | 8.1e-08 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_Zer-1 | PF25013 | 607 - 733 | 4.2e-06 | Zer-1-like, Leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2108 |
| Acc36I | ACCTGC | 1 cut(s) | 1791 |
| AccB1I | GGYRCC | 1 cut(s) | 7 |
| AccBSI | CCGCTC | 1 cut(s) | 482 |
| AccI | GTMKAC | 1 cut(s) | 594 |
| AccII | CGCG | 2 cut(s) | 137, 272 |
| AciI | CCGC | 7 cut(s) | 137, 206, 272, 482, 485, 1786, 1825 |
| AclI | AACGTT | 1 cut(s) | 1381 |
| AclWI | GGATC | 4 cut(s) | 248, 359, 658, 1912 |
| AcoI | YGGCCR | 1 cut(s) | 47 |
| AcsI | RAATTY | 6 cut(s) | 583, 694, 1167, 1236, 1251, 1573 |
| AcuI | CTGAAG | 5 cut(s) | 76, 1051, 1241, 1569, 1578 |
| AcyI | GRCGYC | 1 cut(s) | 1504 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 136, 159, 2026 |
| AflIII | ACRYGT | 4 cut(s) | 69, 78, 373, 643 |
| AgsI | TTSAA | 4 cut(s) | 583, 635, 1085, 1166 |
| AhlI | ACTAGT | 1 cut(s) | 142 |
| AjiI | CACGTC | 1 cut(s) | 79 |
| AjnI | CCWGG | 2 cut(s) | 2160, 2238 |
| Alw21I | GWGCWC | 2 cut(s) | 1065, 1217 |
| Alw26I | GTCTC | 4 cut(s) | 293, 409, 1431, 1547 |
| AlwI | GGATC | 4 cut(s) | 248, 359, 658, 1912 |
| Ama87I | CYCGRG | 1 cut(s) | 290 |
| AoxI | GGCC | 5 cut(s) | 32, 47, 1727, 2182, 2259 |
| ApeKI | GCWGC | 2 cut(s) | 467, 2001 |
| ApoI | RAATTY | 6 cut(s) | 583, 694, 1167, 1236, 1251, 1573 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1338, 1370 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 610, 786, 1236, 1455 |
| AspLEI | GCGC | 1 cut(s) | 2011 |
| AspS9I | GGNCC | 7 cut(s) | 32, 114, 124, 162, 913, 953, 2017 |
| AsuC2I | CCSGG | 2 cut(s) | 957, 2025 |
| AsuHPI | GGTGA | 3 cut(s) | 110, 1859, 1872 |
| AvaI | CYCGRG | 1 cut(s) | 290 |
| AvaII | GGWCC | 6 cut(s) | 114, 124, 162, 913, 953, 2017 |
| BalI | TGGCCA | 1 cut(s) | 49 |
| BanI | GGYRCC | 1 cut(s) | 7 |
| BanII | GRGCYC | 1 cut(s) | 1065 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 414, 446 |
| BauI | CACGAG | 2 cut(s) | 615, 1803 |
| BbsI | GAAGAC | 3 cut(s) | 108, 247, 1110 |
| Bbv12I | GWGCWC | 2 cut(s) | 1065, 1217 |
| BbvCI | CCTCAGC | 1 cut(s) | 177 |
| BbvI | GCAGC | 2 cut(s) | 454, 1988 |
| BccI | CCATC | 7 cut(s) | 19, 46, 691, 1238, 1967, 2143, 2221 |
| BceAI | ACGGC | 1 cut(s) | 1718 |
| BciT130I | CCWGG | 2 cut(s) | 2162, 2240 |
| BcnI | CCSGG | 2 cut(s) | 957, 2025 |
| BcoDI | GTCTC | 4 cut(s) | 293, 409, 1431, 1547 |
| BcuI | ACTAGT | 1 cut(s) | 142 |
| BfaI | CTAG | 4 cut(s) | 143, 456, 728, 2049 |
| BfmI | CTRYAG | 1 cut(s) | 1907 |
| BfuAI | ACCTGC | 1 cut(s) | 1791 |
| BisI | GCNGC | 5 cut(s) | 138, 468, 483, 1826, 2002 |
| BlsI | GCNGC | 5 cut(s) | 139, 469, 484, 1827, 2003 |
| Bme1390I | CCNGG | 4 cut(s) | 957, 2025, 2162, 2240 |
| Bme18I | GGWCC | 6 cut(s) | 114, 124, 162, 913, 953, 2017 |
| BmeT110I | CYCGRG | 1 cut(s) | 290 |
| BmgBI | CACGTC | 1 cut(s) | 79 |
| BmgT120I | GGNCC | 7 cut(s) | 32, 114, 124, 162, 913, 953, 2017 |
| BmiI | GGNNCC | 2 cut(s) | 9, 33 |
| BmrFI | CCNGG | 4 cut(s) | 957, 2025, 2162, 2240 |
| BmsI | GCATC | 4 cut(s) | 163, 852, 1270, 1410 |
| BpiI | GAAGAC | 3 cut(s) | 108, 247, 1110 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 454, 486 |
| BpmI | CTGGAG | 2 cut(s) | 74, 1634 |
| Bpu10I | CCTNAGC | 1 cut(s) | 177 |
| BpuEI | CTTGAG | 5 cut(s) | 106, 1017, 1079, 1307, 1997 |
| BpuMI | CCSGG | 2 cut(s) | 957, 2025 |
| BsaAI | YACGTR | 2 cut(s) | 72, 644 |
| BsaBI | GATNNNNATC | 2 cut(s) | 903, 2247 |
| BsaHI | GRCGYC | 1 cut(s) | 1504 |
| BsaJI | CCNNGG | 2 cut(s) | 229, 2024 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 136, 159, 2026 |
| Bse1I | ACTGG | 5 cut(s) | 57, 394, 1161, 1569, 1651 |
| Bse8I | GATNNNNATC | 2 cut(s) | 903, 2247 |
| BseBI | CCWGG | 2 cut(s) | 2162, 2240 |
| BseDI | CCNNGG | 2 cut(s) | 229, 2024 |
| BseGI | GGATG | 5 cut(s) | 11, 38, 178, 2135, 2213 |
| BseJI | GATNNNNATC | 2 cut(s) | 903, 2247 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 136, 159, 2026 |
| BseMII | CTCAG | 5 cut(s) | 168, 273, 1279, 1867, 2177 |
| BseNI | ACTGG | 5 cut(s) | 57, 394, 1161, 1569, 1651 |
| BseRI | GAGGAG | 4 cut(s) | 308, 492, 1304, 2101 |
| BseXI | GCAGC | 2 cut(s) | 454, 1988 |
| BsgI | GTGCAG | 2 cut(s) | 323, 1987 |
| Bsh1236I | CGCG | 2 cut(s) | 137, 272 |
| BshFI | GGCC | 5 cut(s) | 34, 49, 1729, 2184, 2261 |
| BshNI | GGYRCC | 1 cut(s) | 7 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1065, 1217 |
| BsiHKCI | CYCGRG | 1 cut(s) | 290 |
| BsiSI | CCGG | 3 cut(s) | 153, 956, 2024 |
| BsiWI | CGTACG | 1 cut(s) | 72 |
| BslFI | GGGAC | 1 cut(s) | 195 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 136, 159, 2026 |
| BsmAI | GTCTC | 4 cut(s) | 293, 409, 1431, 1547 |
| BsmFI | GGGAC | 1 cut(s) | 195 |
| BsnI | GGCC | 5 cut(s) | 34, 49, 1729, 2184, 2261 |
| BsoBI | CYCGRG | 1 cut(s) | 290 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1065, 1217 |
| Bsp143I | GATC | 7 cut(s) | 240, 306, 364, 650, 904, 985, 1917 |
| BspACI | CCGC | 7 cut(s) | 137, 206, 272, 482, 485, 1786, 1825 |
| BspANI | GGCC | 5 cut(s) | 34, 49, 1729, 2184, 2261 |
| BspCNI | CTCAG | 5 cut(s) | 169, 272, 1278, 1866, 2178 |
| BspFNI | CGCG | 2 cut(s) | 137, 272 |
| BspHI | TCATGA | 2 cut(s) | 703, 907 |
| BspLI | GGNNCC | 2 cut(s) | 9, 33 |
| BspMI | ACCTGC | 1 cut(s) | 1791 |
| BspPI | GGATC | 4 cut(s) | 248, 359, 658, 1912 |
| BspQI | GCTCTTC | 2 cut(s) | 1070, 1205 |
| BspT107I | GGYRCC | 1 cut(s) | 7 |
| BsrBI | CCGCTC | 1 cut(s) | 482 |
| BsrI | ACTGG | 5 cut(s) | 57, 394, 1161, 1569, 1651 |
| BssECI | CCNNGG | 2 cut(s) | 229, 2024 |
| BssMI | GATC | 7 cut(s) | 240, 306, 364, 650, 904, 985, 1917 |
| BssNI | GRCGYC | 1 cut(s) | 1504 |
| BssSI | CACGAG | 2 cut(s) | 615, 1803 |
| BssT1I | CCWWGG | 1 cut(s) | 229 |
| Bst2BI | CACGAG | 2 cut(s) | 615, 1803 |
| Bst2UI | CCWGG | 2 cut(s) | 2162, 2240 |
| Bst4CI | ACNGT | 7 cut(s) | 430, 716, 1142, 1367, 1396, 1911, 1931 |
| Bst6I | CTCTTC | 3 cut(s) | 1070, 1205, 1545 |
| BstACI | GRCGYC | 1 cut(s) | 1504 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1429 |
| BstBAI | YACGTR | 2 cut(s) | 72, 644 |
| BstC8I | GCNNGC | 4 cut(s) | 496, 1077, 1712, 2069 |
| BstDEI | CTNAG | 7 cut(s) | 177, 185, 259, 473, 1265, 1853, 2186 |
| BstF5I | GGATG | 5 cut(s) | 11, 38, 178, 2135, 2213 |
| BstFNI | CGCG | 2 cut(s) | 137, 272 |
| BstHHI | GCGC | 1 cut(s) | 2011 |
| BstKTI | GATC | 7 cut(s) | 243, 309, 367, 653, 907, 988, 1920 |
| BstMAI | GTCTC | 4 cut(s) | 293, 409, 1431, 1547 |
| BstMBI | GATC | 7 cut(s) | 240, 306, 364, 650, 904, 985, 1917 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 491, 1420, 1429, 1711, 1822 |
| BstNI | CCWGG | 2 cut(s) | 2162, 2240 |
| BstNSI | RCATGY | 3 cut(s) | 377, 673, 1079 |
| BstSCI | CCNGG | 4 cut(s) | 955, 2023, 2160, 2238 |
| BstSFI | CTRYAG | 1 cut(s) | 1907 |
| BstUI | CGCG | 2 cut(s) | 137, 272 |
| BstV1I | GCAGC | 2 cut(s) | 454, 1988 |
| BstV2I | GAAGAC | 3 cut(s) | 108, 247, 1110 |
| BstX2I | RGATCY | 1 cut(s) | 240 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 18, 45, 820 |
| BstYI | RGATCY | 1 cut(s) | 240 |
| BsuRI | GGCC | 5 cut(s) | 34, 49, 1729, 2184, 2261 |
| BtrI | CACGTC | 1 cut(s) | 79 |
| BtsCI | GGATG | 5 cut(s) | 11, 38, 178, 2135, 2213 |
| BtsI | GCAGTG | 1 cut(s) | 2004 |
| BtsIMutI | CAGTG | 5 cut(s) | 50, 1154, 1217, 1665, 2004 |
| BveI | ACCTGC | 1 cut(s) | 1791 |
| Cac8I | GCNNGC | 4 cut(s) | 496, 1077, 1712, 2069 |
| CciI | TCATGA | 2 cut(s) | 703, 907 |
| CfoI | GCGC | 1 cut(s) | 2011 |
| Cfr13I | GGNCC | 7 cut(s) | 32, 114, 124, 162, 913, 953, 2017 |
| CseI | GACGC | 1 cut(s) | 1493 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1110, 1145, 1304, 1339 |
| DdeI | CTNAG | 7 cut(s) | 177, 185, 259, 473, 1265, 1853, 2186 |
| DpnI | GATC | 7 cut(s) | 242, 308, 366, 652, 906, 987, 1919 |
| DpnII | GATC | 7 cut(s) | 240, 306, 364, 650, 904, 985, 1917 |
| EaeI | YGGCCR | 1 cut(s) | 47 |
| Eam1104I | CTCTTC | 3 cut(s) | 1070, 1205, 1545 |
| EarI | CTCTTC | 3 cut(s) | 1070, 1205, 1545 |
| EciI | GGCGGA | 1 cut(s) | 500 |
| Ecl136II | GAGCTC | 1 cut(s) | 1063 |
| Eco130I | CCWWGG | 1 cut(s) | 229 |
| Eco147I | AGGCCT | 2 cut(s) | 2184, 2261 |
| Eco24I | GRGCYC | 1 cut(s) | 1065 |
| Eco47I | GGWCC | 6 cut(s) | 114, 124, 162, 913, 953, 2017 |
| Eco53kI | GAGCTC | 1 cut(s) | 1063 |
| Eco57I | CTGAAG | 5 cut(s) | 76, 1051, 1241, 1569, 1578 |
| Eco88I | CYCGRG | 1 cut(s) | 290 |
| EcoICRI | GAGCTC | 1 cut(s) | 1063 |
| EcoO109I | RGGNCCY | 3 cut(s) | 114, 162, 2017 |
| EcoRII | CCWGG | 2 cut(s) | 2160, 2238 |
| EcoT14I | CCWWGG | 1 cut(s) | 229 |
| EcoT22I | ATGCAT | 1 cut(s) | 1425 |
| EcoT38I | GRGCYC | 1 cut(s) | 1065 |
| ErhI | CCWWGG | 1 cut(s) | 229 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 771, 803, 1041, 1073 |
| FaqI | GGGAC | 1 cut(s) | 195 |
| FauNDI | CATATG | 1 cut(s) | 1319 |
| FblI | GTMKAC | 1 cut(s) | 594 |
| Fnu4HI | GCNGC | 5 cut(s) | 138, 468, 483, 1826, 2002 |
| FokI | GGATG | 4 cut(s) | 25, 185, 2122, 2200 |
| FriOI | GRGCYC | 1 cut(s) | 1065 |
| Fsp4HI | GCNGC | 5 cut(s) | 138, 468, 483, 1826, 2002 |
| FspBI | CTAG | 4 cut(s) | 143, 456, 728, 2049 |
| GlaI | GCGC | 1 cut(s) | 2010 |
| GluI | GCNGC | 5 cut(s) | 138, 468, 483, 1826, 2002 |
| GsuI | CTGGAG | 2 cut(s) | 74, 1634 |
| HaeIII | GGCC | 5 cut(s) | 34, 49, 1729, 2184, 2261 |
| HapII | CCGG | 3 cut(s) | 153, 956, 2024 |
| HgaI | GACGC | 1 cut(s) | 1493 |
| HhaI | GCGC | 1 cut(s) | 2011 |
| Hin1I | GRCGYC | 1 cut(s) | 1504 |
| Hin6I | GCGC | 1 cut(s) | 2009 |
| HinP1I | GCGC | 1 cut(s) | 2009 |
| HincII | GTYRAC | 3 cut(s) | 547, 895, 2094 |
| HindII | GTYRAC | 3 cut(s) | 547, 895, 2094 |
| HindIII | AAGCTT | 2 cut(s) | 1273, 1682 |
| HinfI | GANTC | 8 cut(s) | 156, 275, 611, 944, 1030, 1466, 1662, 1719 |
| HpaII | CCGG | 3 cut(s) | 153, 956, 2024 |
| HphI | GGTGA | 3 cut(s) | 110, 1859, 1872 |
| Hpy166II | GTNNAC | 7 cut(s) | 547, 595, 895, 1151, 1936, 2094, 2192 |
| Hpy8I | GTNNAC | 7 cut(s) | 547, 595, 895, 1151, 1936, 2094, 2192 |
| Hpy99I | CGWCG | 1 cut(s) | 80 |
| HpyAV | CCTTC | 7 cut(s) | 127, 183, 378, 1185, 1553, 2030, 2055 |
| HpyCH4III | ACNGT | 7 cut(s) | 430, 716, 1142, 1367, 1396, 1911, 1931 |
| HpyCH4IV | ACGT | 5 cut(s) | 71, 78, 643, 1381, 1489 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 491, 1420, 1429, 1711, 1822 |
| HpyF3I | CTNAG | 7 cut(s) | 177, 185, 259, 473, 1265, 1853, 2186 |
| HpySE526I | ACGT | 5 cut(s) | 71, 78, 643, 1381, 1489 |
| Hsp92I | GRCGYC | 1 cut(s) | 1504 |
| HspAI | GCGC | 1 cut(s) | 2009 |
| Kzo9I | GATC | 7 cut(s) | 240, 306, 364, 650, 904, 985, 1917 |
| LguI | GCTCTTC | 2 cut(s) | 1070, 1205 |
| LmnI | GCTCC | 5 cut(s) | 295, 479, 1194, 1647, 1813 |
| Lsp1109I | GCAGC | 2 cut(s) | 454, 1988 |
| LweI | GCATC | 4 cut(s) | 163, 852, 1270, 1410 |
| MaeI | CTAG | 4 cut(s) | 143, 456, 728, 2049 |
| MaeII | ACGT | 5 cut(s) | 71, 78, 643, 1381, 1489 |
| MaeIII | GTNAC | 3 cut(s) | 1132, 1390, 1763 |
| MalI | GATC | 7 cut(s) | 242, 308, 366, 652, 906, 987, 1919 |
| MbiI | CCGCTC | 1 cut(s) | 482 |
| MboI | GATC | 7 cut(s) | 240, 306, 364, 650, 904, 985, 1917 |
| MfeI | CAATTG | 2 cut(s) | 600, 917 |
| MflI | RGATCY | 1 cut(s) | 240 |
| MhlI | GDGCHC | 2 cut(s) | 1065, 1217 |
| MlsI | TGGCCA | 1 cut(s) | 49 |
| MluNI | TGGCCA | 1 cut(s) | 49 |
| MlyI | GAGTC | 3 cut(s) | 165, 1024, 1656 |
| MmeI | TCCRAC | 2 cut(s) | 628, 1669 |
| Mox20I | TGGCCA | 1 cut(s) | 49 |
| Mph1103I | ATGCAT | 1 cut(s) | 1425 |
| MroXI | GAANNNNTTC | 4 cut(s) | 610, 786, 1236, 1455 |
| MscI | TGGCCA | 1 cut(s) | 49 |
| MslI | CAYNNNNRTG | 4 cut(s) | 16, 43, 848, 1337 |
| Msp20I | TGGCCA | 1 cut(s) | 49 |
| MspI | CCGG | 3 cut(s) | 153, 956, 2024 |
| MspR9I | CCNGG | 4 cut(s) | 957, 2025, 2162, 2240 |
| MunI | CAATTG | 2 cut(s) | 600, 917 |
| MvaI | CCWGG | 2 cut(s) | 2162, 2240 |
| MvnI | CGCG | 2 cut(s) | 137, 272 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 491, 1420, 1429, 1711, 1822 |
| NciI | CCSGG | 2 cut(s) | 957, 2025 |
| NdeI | CATATG | 1 cut(s) | 1319 |
| NdeII | GATC | 7 cut(s) | 240, 306, 364, 650, 904, 985, 1917 |
| NlaIV | GGNNCC | 2 cut(s) | 9, 33 |
| NsiI | ATGCAT | 1 cut(s) | 1425 |
| NspI | RCATGY | 3 cut(s) | 377, 673, 1079 |
| PaeI | GCATGC | 1 cut(s) | 1079 |
| PaeR7I | CTCGAG | 1 cut(s) | 290 |
| PagI | TCATGA | 2 cut(s) | 703, 907 |
| PceI | AGGCCT | 2 cut(s) | 2184, 2261 |
| PciI | ACATGT | 1 cut(s) | 373 |
| PciSI | GCTCTTC | 2 cut(s) | 1070, 1205 |
| PdmI | GAANNNNTTC | 4 cut(s) | 610, 786, 1236, 1455 |
| PfeI | GAWTC | 5 cut(s) | 275, 611, 944, 1466, 1719 |
| Pfl23II | CGTACG | 1 cut(s) | 72 |
| PfoI | TCCNGGA | 1 cut(s) | 955 |
| PkrI | GCNGC | 5 cut(s) | 139, 469, 484, 1827, 2003 |
| PleI | GAGTC | 3 cut(s) | 164, 1024, 1656 |
| PpsI | GAGTC | 3 cut(s) | 164, 1024, 1656 |
| Ppu21I | YACGTR | 2 cut(s) | 72, 644 |
| PpuMI | RGGWCCY | 3 cut(s) | 114, 162, 2017 |
| PscI | ACATGT | 1 cut(s) | 373 |
| PsiI | TTATAA | 1 cut(s) | 2108 |
| Psp124BI | GAGCTC | 1 cut(s) | 1065 |
| Psp1406I | AACGTT | 1 cut(s) | 1381 |
| Psp5II | RGGWCCY | 3 cut(s) | 114, 162, 2017 |
| Psp6I | CCWGG | 2 cut(s) | 2160, 2238 |
| PspGI | CCWGG | 2 cut(s) | 2160, 2238 |
| PspLI | CGTACG | 1 cut(s) | 72 |
| PspN4I | GGNNCC | 2 cut(s) | 9, 33 |
| PspPI | GGNCC | 7 cut(s) | 32, 114, 124, 162, 913, 953, 2017 |
| PspPPI | RGGWCCY | 3 cut(s) | 114, 162, 2017 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 65, 97 |
| PsuI | RGATCY | 1 cut(s) | 240 |
| RseI | CAYNNNNRTG | 4 cut(s) | 16, 43, 848, 1337 |
| SacI | GAGCTC | 1 cut(s) | 1065 |
| SapI | GCTCTTC | 2 cut(s) | 1070, 1205 |
| SatI | GCNGC | 5 cut(s) | 138, 468, 483, 1826, 2002 |
| Sau3AI | GATC | 7 cut(s) | 240, 306, 364, 650, 904, 985, 1917 |
| Sau96I | GGNCC | 7 cut(s) | 32, 114, 124, 162, 913, 953, 2017 |
| SchI | GAGTC | 3 cut(s) | 165, 1024, 1656 |
| ScrFI | CCNGG | 4 cut(s) | 957, 2025, 2162, 2240 |
| SduI | GDGCHC | 2 cut(s) | 1065, 1217 |
| SfaNI | GCATC | 4 cut(s) | 163, 852, 1270, 1410 |
| SfcI | CTRYAG | 1 cut(s) | 1907 |
| Sfr274I | CTCGAG | 1 cut(s) | 290 |
| SinI | GGWCC | 6 cut(s) | 114, 124, 162, 913, 953, 2017 |
| SlaI | CTCGAG | 1 cut(s) | 290 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 16, 43, 848, 1337 |
| SmlI | CTYRAG | 6 cut(s) | 85, 290, 1032, 1058, 1286, 2012 |
| SmoI | CTYRAG | 6 cut(s) | 85, 290, 1032, 1058, 1286, 2012 |
| SpeI | ACTAGT | 1 cut(s) | 142 |
| SphI | GCATGC | 1 cut(s) | 1079 |
| SseBI | AGGCCT | 2 cut(s) | 2184, 2261 |
| SsiI | CCGC | 7 cut(s) | 137, 206, 272, 482, 485, 1786, 1825 |
| SspI | AATATT | 3 cut(s) | 351, 638, 1584 |
| SspMI | CTAG | 4 cut(s) | 143, 456, 728, 2049 |
| SstI | GAGCTC | 1 cut(s) | 1065 |
| StuI | AGGCCT | 2 cut(s) | 2184, 2261 |
| StyD4I | CCNGG | 4 cut(s) | 955, 2023, 2160, 2238 |
| StyI | CCWWGG | 1 cut(s) | 229 |
| TaaI | ACNGT | 7 cut(s) | 430, 716, 1142, 1367, 1396, 1911, 1931 |
| TaiI | ACGT | 5 cut(s) | 74, 81, 646, 1384, 1492 |
| TatI | WGTACW | 2 cut(s) | 430, 1604 |
| TauI | GCSGC | 3 cut(s) | 140, 485, 1828 |
| TfiI | GAWTC | 5 cut(s) | 275, 611, 944, 1466, 1719 |
| TscAI | CASTG | 5 cut(s) | 57, 1161, 1224, 1672, 2011 |
| TseI | GCWGC | 2 cut(s) | 467, 2001 |
| TspGWI | ACGGA | 2 cut(s) | 124, 137 |
| TspRI | CASTG | 5 cut(s) | 57, 1161, 1224, 1672, 2011 |
| VpaK11BI | GGWCC | 6 cut(s) | 114, 124, 162, 913, 953, 2017 |
| XapI | RAATTY | 6 cut(s) | 583, 694, 1167, 1236, 1251, 1573 |
| XbaI | TCTAGA | 1 cut(s) | 2048 |
| XceI | RCATGY | 3 cut(s) | 377, 673, 1079 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 42 |
| XhoI | CTCGAG | 1 cut(s) | 290 |
| XmiI | GTMKAC | 1 cut(s) | 594 |
| XmnI | GAANNNNTTC | 4 cut(s) | 610, 786, 1236, 1455 |
| XspI | CTAG | 4 cut(s) | 143, 456, 728, 2049 |
| Zsp2I | ATGCAT | 1 cut(s) | 1425 |