MD00G1027000.v1.1

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
4521310 .. 4524179
2870 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1027000.v1.1.491

Sequence Viewer

Length: 2052 bp
ATGACTGGCTTTTGTTGTTTGAAGGAGCTTGACTTGGGTTTAGGTATTTCAGTATCATCGGTTCGGCAACACAAACACAACCGCTGCCATTTTTTCAGTCGTGATCCGAACCACTACAGTGCCATAACAATGGATACCGCCATGACAGCCCACGAAGCCTCCTCTTCATCCTCCTCCAAGTCAAAACTTGGGAATTACGACTTGTTCTTGAGCTTCAGAGGTGAAGACACGCGCAAGGGCTTCACAGGCCACCTCCACGCGGCATTAAAAGACAGGGGATACCAGGCTTATATGGATGAGGACGATCTAAAAAGAGGGGAAGAAATAAAAGAGGAAATGTTCCGGGCAATCGAAGGGTCGAGGATCTCCATCATTGTCTTCTCAAACAGGTATGCGGATTCAAGTTGGTGTCTTGATGAGCTGGTGAAGATCATGGAGTGCAGATCCAAACTGGGGCGACATGTTTTGCCAATATTCTATCATGTTGATCCTTCACATGTTAGGAAGCAAGACGGAGATTTAGCCGAAGCATTTCTGAAGCACGAAGAGGGCATCGGTGAAGAAAAAGATGGCAAGAAACGTGAAGCTAAACAAGAAAGGGTAAAGCAGTGGAGAAAGGCTCTTACAGAAGCTGCAAACTTGTCTGGCCACCATGTCACTGATAATGGGCGTGAAGCAAATCTTATTAGAGAAATTGTTGACAATATTATTACGAAATGGCTTATGAACACAAACAAACTAAGAGTGGCCAAGCACCCAGTTGGTATCAGTTCTCGTACACAAGATATTATCAGTCATCTTTCAAGTGGTGGATCAAATGTTGTCATGGTTGGAATTTGGGGGATGGGTGGATTGGGTAAAACAACAGCTGCCAAAGCCATTTATAATCAAATTCATCATAACTTCCAATTCAAAAGTTTCCTGCCCGACATTAGCAACACTGCAAGTAAACATGGTCTAGTTTATTTGCAAGAAAAACTTATTTCTGACATCTTGAAAGAGGAGTCTAAAATAAGAAGTGTTGATGAAGGCATCTATCTGATAAAAGATCAATTTTCACATAGAAGGGTACTTGTCATCATGGACAACATAGATGAAGGGGAGCAACTGAATGCAATAGCTGGAAATCACAATTGGTTTGGTCTGGGAAGTAGAATTATCATAACTACACGAGATGAACATGTACTAAAGCAAGGGAAAGTGAACAAGACATATCAGCTTCCGGAAATGAATAAAGGAGAAGCTCTAGAGCTCTTTAGTTGGCATGCCTTTGGGAATAGTTGGCCTAACGAAGGATATATTGAACTCTCAGAAAATGTTTTTTCTTACTGTGGAGGTTTGCCACTAGCCCTTGAAGTTTTAGGTTCTTTTTTGGTTGAAAGAACCAAAGCAGAATGGAAAAGTCAATTGAAGAAATTGAAAAGAAAACCTGAAGGAAAAATAATAAAACCACTCAGAATAAGCTTTGAAGGGCTAGATGACACACAAAAGGCTATATTCCTTGATATATCTTGTTTCTTTATTGGAAAGGACAAGGACTACGTCGCAAAAGTACTAGATGGATGTGAATTTTTTGCAACAATAGGAATCAGTGTCCTCCGTGAACGATGCCTTGTAATTGTTGAAGACAACAAGTTGAATATGCATGATTTGCTTCGGGAAATGGCCAGAGTAGTAATTTCTGAAAAATTCCCTGGTCACCCTGAAAAATGGTGTAGGTTGTGGGATGATCGAGATGTCATCGATGTATTGACAAATAAATCTGGAACTCGAAATGTTGAAGGACTCGCTCTACATTTGCAAAGCTATGATGAGGCTAGTTTCAGTACAAAAGCATTTGCTAAAATGAAGAAACTTAGACTGCTTGACCTCAGCAGCGTAGAGCTCAATGGAGAATACAAACATCTTCCCAAAGAGTTAATATGGCTGAGCTGGGAACGATGCCGTTTAAAGTCCATACCAGATGACTTTTTTAATCAAGATAAACTAGTTGTTTTAGAGATGCGGTGGAGCAAACTGGTACAAGTTTGGGAGGGTTCCAAGGTACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

684

Amino Acids

78.02

Weight (kDa)

8.12

Isoelectric Point (pI)

34.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 65 - 245 5.2e-50 TIR domain
TIR_2 PF13676 69 - 165 2e-17 TIR domain
NB-ARC PF00931 260 - 425 5.5e-18 NB-ARC domain
WHD_ROQ1 PF23282 495 - 561 1.2e-13 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36930 AT5G36930 AT5G36930 AT5G36930
fragaria_vesca FvH4_3g45361 FvH4_3g45380 FvH4_5g21061 FvH4_5g21062 FvH4_5g21063 FvH4_5g32050 FvH4_5g32970 FvH4_5g32990 FvH4_5g34190 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34211 FvH4_5g34240 FvH4_5g34250
malus_domestica MD00G1011700.v1.1 MD00G1026100.v1.1 MD00G1026500.v1.1 MD00G1027000.v1.1 MD00G1027100.v1.1 MD00G1027700.v1.1 MD00G1027800.v1.1 MD00G1028000.v1.1 MD00G1220000.v1.1 MD02G1024400.v1.1 MD02G1024800.v1.1 MD02G1026000.v1.1 MD02G1026100.v1.1 MD02G1031800.v1.1 MD02G1038500.v1.1 MD02G1038700.v1.1 MD02G1039200.v1.1 MD02G1040600.v1.1 MD02G1040900.v1.1 MD02G1041200.v1.1 MD02G1041300.v1.1 MD02G1041700.v1.1 MD02G1042000.v1.1 MD02G1043800.v1.1 MD02G1043900.v1.1 MD02G1044300.v1.1 MD02G1045200.v1.1 MD02G1045300.v1.1 MD02G1051200.v1.1 MD02G1052200.v1.1 MD02G1052800.v1.1 MD02G1053100.v1.1 MD02G1053600.v1.1 MD02G1055500.v1.1 MD02G1063300.v1.1 MD02G1063400.v1.1 MD02G1063800.v1.1 MD02G1306500.v1.1 MD02G1306600.v1.1 MD02G1306700.v1.1 MD02G1306900.v1.1 MD02G1307200.v1.1 MD04G1011700.v1.1 MD05G1315400.v1.1 MD05G1316000.v1.1 MD05G1316700.v1.1 MD05G1317000.v1.1 MD05G1317300.v1.1 MD05G1317600.v1.1 MD05G1317700.v1.1 MD07G1102800.v1.1 MD07G1238200.v1.1 MD08G1175900.v1.1 MD08G1203600.v1.1 MD09G1024200.v1.1 MD09G1039600.v1.1 MD09G1044800.v1.1 MD09G1045100.v1.1 MD10G1038700.v1.1 MD10G1039000.v1.1 MD10G1039200.v1.1 MD10G1040000.v1.1 MD10G1040200.v1.1 MD10G1040600.v1.1 MD10G1040800.v1.1 MD10G1297300.v1.1 MD12G1247500.v1.1 MD12G1247900.v1.1 MD12G1248300.v1.1 MD12G1248800.v1.1 MD15G1103700.v1.1 MD15G1103800.v1.1 MD15G1104000.v1.1 MD15G1179600.v1.1 MD15G1182500.v1.1 MD16G1068200.v1.1 MD16G1068300.v1.1 MD17G1024600.v1.1 MD17G1024700.v1.1 MD17G1025000.v1.1 MD17G1025900.v1.1
prunus_persica Prupe.1G539800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G557100_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557300_v2.0.a1
pyrus_communis pycom02g02080 pycom02g02090 pycom02g02110 pycom02g03220 pycom02g03260 pycom02g03370 pycom02g03390 pycom02g03410 pycom02g03420 pycom02g03450 pycom02g03500 pycom02g03730 pycom02g03770 pycom02g04400 pycom02g04410 pycom02g04430 pycom02g04450 pycom02g04460 pycom02g04490 pycom02g05200 pycom02g25710 pycom02g25750 pycom02g25790 pycom02g25810 pycom02g25830 pycom04g00920 pycom04g00930 pycom04g00940 pycom05g29300 pycom05g29310 pycom05g29380 pycom05g29410 pycom07g06310 pycom07g21420 pycom08g15070 pycom08g17540 pycom08g17560 pycom08g17570 pycom10g02670 pycom10g02680 pycom10g02700 pycom10g02770 pycom10g02790 pycom10g02800 pycom10g02810 pycom10g25020 pycom10g25030 pycom10g25050 pycom10g25080 pycom111g01990 pycom111g02000 pycom111g02030 pycom111g02040 pycom111g02050 pycom111g02060 pycom12g22710 pycom12g22720 pycom12g22730 pycom12g22740 pycom12g22750 pycom12g22770 pycom12g22780 pycom12g22790 pycom12g22800 pycom12g22810 pycom12g22830 pycom12g22840 pycom12g22860 pycom15g09440 pycom15g09480 pycom15g16120 pycom15g32380 pycom16g05970 pycom17g02100
rosa_chinensis RchiOBHm_Chr2g0144661 RchiOBHm_Chr4g0407491 RchiOBHm_Chr4g0407501 RchiOBHm_Chr4g0412381 RchiOBHm_Chr7g0208191 RchiOBHm_Chr7g0208201 RchiOBHm_Chr7g0208211 RchiOBHm_Chr7g0208221 RchiOBHm_Chr7g0228071 RchiOBHm_Chr7g0228121 RchiOBHm_Chr7g0230971 RchiOBHm_Chr7g0230981 RchiOBHm_Chr7g0233901 RchiOBHm_Chr7g0233951 RchiOBHm_Chr7g0233961 RchiOBHm_Chr7g0233991 RchiOBHm_Chr7g0234021 RchiOBHm_Chr7g0234151 RchiOBHm_Chr7g0234161 RchiOBHm_Chr7g0234241 RchiOBHm_Chr7g0234501 RchiOBHm_Chr7g0234641 RchiOBHm_Chr7g0234771 RchiOBHm_Chr7g0234781 RchiOBHm_Chr7g0234991 RchiOBHm_Chr7g0241291 RchiOBHm_Chr7g0241301
rosa_laevigata RLG00000001186 RLG00000001187 RLG00000001212 RLG00000001226 RLG00000001233 RLG00000001590 RLG00000003242 RLG00000003243 RLG00000003249 RLG00000008688 RLG00000008690
rosa_multiflora Rmu_co7966574.1_g000001 Rmu_co8120830.1_g000001 Rmu_co8142226.1_g000001 Rmu_co8293083.1_g000001 Rmu_co8351227.1_g000001 Rmu_co8380159.1_g000001 Rmu_co8456505.1_g000001 Rmu_sc0000676.1_g000025 Rmu_sc0000706.1_g000018 Rmu_sc0000706.1_g000040 Rmu_sc0000740.1_g000029 Rmu_sc0000740.1_g000032 Rmu_sc0000740.1_g000037 Rmu_sc0000740.1_g000040 Rmu_sc0000762.1_g000003 Rmu_sc0000762.1_g000019 Rmu_sc0000762.1_g000034 Rmu_sc0000762.1_g000069 Rmu_sc0000892.1_g000001 Rmu_sc0000945.1_g000040 Rmu_sc0001913.1_g000037 Rmu_sc0001913.1_g000041 Rmu_sc0001913.1_g000049 Rmu_sc0002775.1_g000017 Rmu_sc0002775.1_g000018 Rmu_sc0002775.1_g000020 Rmu_sc0002775.1_g000021 Rmu_sc0002775.1_g000022 Rmu_sc0002775.1_g000025 Rmu_sc0002775.1_g000026 Rmu_sc0002775.1_g000028 Rmu_sc0002775.1_g000030 Rmu_sc0004858.1_g000002 Rmu_sc0004864.1_g000022 Rmu_sc0005038.1_g000023 Rmu_sc0005840.1_g000014 Rmu_sc0006724.1_g000003 Rmu_sc0006824.1_g000005 Rmu_sc0007869.1_g000003 Rmu_sc0007869.1_g000005 Rmu_sc0007869.1_g000008 Rmu_sc0008646.1_g000007 Rmu_sc0009637.1_g000009 Rmu_sc0010500.1_g000002 Rmu_sc0010500.1_g000012 Rmu_sc0012403.1_g000025 Rmu_sc0013768.1_g000025 Rmu_sc0015625.1_g000001 Rmu_sc0019715.1_g000001 Rmu_sc0021133.1_g000002 Rmu_sc0021904.1_g000001 Rmu_sc0021904.1_g000003 Rmu_sc0021904.1_g000004 Rmu_sc0022054.1_g000001 Rmu_sc0026025.1_g000001 Rmu_sc0036828.1_g000002 Rmu_sc0041808.1_g000001 Rmu_ssc0000012.1_g000001
rosa_roxburghii Rroxscaffold_3G00226370 Rroxscaffold_3G00226860 Rroxscaffold_3G00226900 Rroxscaffold_3G00226930 Rroxscaffold_3G00226940 Rroxscaffold_3G00226970 Rroxscaffold_3G00226980 Rroxscaffold_3G00231530 Rroxscaffold_3G00237090 Rroxscaffold_3G00250760 Rroxscaffold_3G00250800
rosa_rugosa Rorug04G0082300 Rorug07G0101800 Rorug07G0102000 Rorug07G0102100 Rorug07G0221200 Rorug07G0245700 Rorug07G0245700 Rorug07G0245700 Rorug07G0263900 Rorug07G0264000 Rorug07G0264000 Rorug07G0264500 Rorug07G0282900 Rorug07G0282900 Rorug07G0283100 Rorug07G0283200.1 Rorug07G0283300 Rorug07G0283900 Rorug07G0284000 Rorug07G0284100 Rorug07G0284300 Rorug07G0284400 Rorug07G0284500 Rorug07G0285000 Rorug07G0285200 Rorug07G0285300 Rorug07G0285500 Rorug07G0286800 Rorug07G0286900 Rorug07G0287100 Rorug07G0287200
rosa_samantha Rh7AG236100 Rh7AG236200 Rh7AG236300 Rh7AG440000 Rh7AG440100 Rh7BG411900 Rh7BG412000 Rh7BG412600 Rh7CG251300 Rh7CG417700 Rh7CG460100 Rh7DG242100 Rh7DG242200 Rh7DG242300 Rh7DG429300
rosa_wichuraiana Rw0G005070 Rw0G010780 Rw0G012530 Rw7G020110 Rw7G020160 Rw7G020170 Rw7G033210 Rw7G033230 Rw7G033250 Rw7G034540 Rw7G035150 Rw7G036190 Rw7G036210 Rw7G036260 Rw7G036270 Rw7G036290 Rw7G036300 Rw7G036310 Rw7G036350 Rw7G036360 Rw7G036440 Rw7G036510 Rw7G036530 Rw7G036570 Rw7G036590 Rw7G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 885
AccII CGCG 2 cut(s) 232, 260
AccIII TCCGGA 1 cut(s) 1222
AciI CCGC 5 cut(s) 82, 138, 260, 395, 2005
AclWI GGATC 5 cut(s) 98, 371, 438, 482, 820
AcoI YGGCCR 3 cut(s) 646, 747, 1665
AcsI RAATTY 4 cut(s) 834, 891, 1568, 1688
AcuI CTGAAG 3 cut(s) 199, 557, 1452
AfaI GTAC 7 cut(s) 778, 1071, 1185, 1554, 1828, 2022, 2046
AfiI CCNNNNNNNGG 3 cut(s) 259, 453, 1292
AflIII ACRYGT 3 cut(s) 460, 496, 1180
AhlI ACTAGT 1 cut(s) 1987
AjnI CCWGG 2 cut(s) 282, 1693
AjuI GAANNNNNNNTTGG 2 cut(s) 1117, 1149
AleI CACNNNNGTG 1 cut(s) 117
Alw21I GWGCWC 2 cut(s) 1254, 1887
AlwI GGATC 5 cut(s) 98, 371, 438, 482, 820
AlwNI CAGNNNCTG 1 cut(s) 632
Aor13HI TCCGGA 1 cut(s) 1222
AoxI GGCC 5 cut(s) 247, 646, 747, 1283, 1665
ApeKI GCWGC 4 cut(s) 84, 632, 869, 1875
ApoI RAATTY 4 cut(s) 834, 891, 1568, 1688
Asp700I GAANNNNTTC 1 cut(s) 531
AspLEI GCGC 1 cut(s) 234
AsuC2I CCSGG 1 cut(s) 344
AsuHPI GGTGA 4 cut(s) 233, 436, 569, 1691
BalI TGGCCA 3 cut(s) 648, 749, 1667
BanII GRGCYC 2 cut(s) 1254, 1887
BauI CACGAG 1 cut(s) 1170
BbsI GAAGAC 3 cut(s) 231, 370, 1632
Bbv12I GWGCWC 2 cut(s) 1254, 1887
BbvCI CCTCAGC 1 cut(s) 1871
BbvI GCAGC 4 cut(s) 71, 619, 856, 1887
BccI CCATC 4 cut(s) 377, 563, 838, 1553
BceAI ACGGC 1 cut(s) 1929
BciT130I CCWGG 2 cut(s) 284, 1695
BciVI GTATCC 2 cut(s) 127, 272
BcnI CCSGG 1 cut(s) 344
BcuI ACTAGT 1 cut(s) 1987
BfaI CTAG 7 cut(s) 959, 1247, 1346, 1475, 1556, 1818, 1988
BfmI CTRYAG 1 cut(s) 115
BfuI GTATCC 2 cut(s) 127, 272
BisI GCNGC 5 cut(s) 85, 261, 633, 870, 1876
BlpI GCTNAGC 1 cut(s) 1928
BlsI GCNGC 5 cut(s) 86, 262, 634, 871, 1877
BmcAI AGTACT 1 cut(s) 1554
Bme1390I CCNGG 3 cut(s) 284, 344, 1695
BmiI GGNNCC 1 cut(s) 2038
BmrFI CCNGG 3 cut(s) 284, 344, 1695
BmrI ACTGGG 2 cut(s) 461, 752
BmsI GCATC 5 cut(s) 561, 1041, 1598, 1931, 1992
BmuI ACTGGG 2 cut(s) 461, 752
BpiI GAAGAC 3 cut(s) 231, 370, 1632
BplI GAGNNNNNCTC 2 cut(s) 604, 636
Bpu10I CCTNAGC 1 cut(s) 1871
Bpu1102I GCTNAGC 1 cut(s) 1928
BpuEI CTTGAG 1 cut(s) 229
BpuMI CCSGG 1 cut(s) 344
Bsa29I ATCGAT 1 cut(s) 1743
BsaBI GATNNNNATC 1 cut(s) 368
BsaJI CCNNGG 2 cut(s) 1693, 2040
BsaWI WCCGGW 1 cut(s) 1222
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 3 cut(s) 259, 453, 1292
Bse1I ACTGG 4 cut(s) 10, 456, 758, 2022
Bse8I GATNNNNATC 1 cut(s) 368
BseAI TCCGGA 1 cut(s) 1222
BseBI CCWGG 2 cut(s) 284, 1695
BseCI ATCGAT 1 cut(s) 1743
BseDI CCNNGG 2 cut(s) 1693, 2040
BseGI GGATG 5 cut(s) 167, 301, 849, 1568, 1732
BseJI GATNNNNATC 1 cut(s) 368
BseLI CCNNNNNNNGG 3 cut(s) 259, 453, 1292
BseMII CTCAG 4 cut(s) 1323, 1468, 1885, 1919
BseNI ACTGG 4 cut(s) 10, 456, 758, 2022
BseRI GAGGAG 3 cut(s) 151, 163, 1016
BseXI GCAGC 4 cut(s) 71, 619, 856, 1887
BseYI CCCAGC 1 cut(s) 1932
BsgI GTGCAG 1 cut(s) 460
Bsh1236I CGCG 2 cut(s) 232, 260
BshFI GGCC 5 cut(s) 249, 648, 749, 1285, 1667
BshVI ATCGAT 1 cut(s) 1743
BsiHKAI GWGCWC 2 cut(s) 1254, 1887
BsiSI CCGG 2 cut(s) 343, 1223
BslI CCNNNNNNNGG 3 cut(s) 259, 453, 1292
BsmI GAATGC 1 cut(s) 1117
BsnI GGCC 5 cut(s) 249, 648, 749, 1285, 1667
Bsp1286I GDGCHC 2 cut(s) 1254, 1887
Bsp13I TCCGGA 1 cut(s) 1222
Bsp143I GATC 9 cut(s) 103, 304, 363, 429, 443, 487, 812, 1048, 1729
Bsp1720I GCTNAGC 1 cut(s) 1928
BspACI CCGC 5 cut(s) 82, 138, 260, 395, 2005
BspANI GGCC 5 cut(s) 249, 648, 749, 1285, 1667
BspCNI CTCAG 4 cut(s) 1322, 1467, 1884, 1920
BspDI ATCGAT 1 cut(s) 1743
BspEI TCCGGA 1 cut(s) 1222
BspFNI CGCG 2 cut(s) 232, 260
BspLI GGNNCC 1 cut(s) 2038
BspPI GGATC 5 cut(s) 98, 371, 438, 482, 820
BsrI ACTGG 4 cut(s) 10, 456, 758, 2022
BssECI CCNNGG 2 cut(s) 1693, 2040
BssMI GATC 9 cut(s) 103, 304, 363, 429, 443, 487, 812, 1048, 1729
BssSI CACGAG 1 cut(s) 1170
BssT1I CCWWGG 1 cut(s) 2040
Bst2BI CACGAG 1 cut(s) 1170
Bst2UI CCWGG 2 cut(s) 284, 1695
Bst4CI ACNGT 2 cut(s) 119, 1331
Bst6I CTCTTC 2 cut(s) 169, 540
BstAPI GCANNNNNTGC 1 cut(s) 1651
BstC8I GCNNGC 1 cut(s) 1266
BstDEI CTNAG 6 cut(s) 740, 1309, 1454, 1856, 1871, 1928
BstEII GGTNACC 1 cut(s) 1697
BstENI CCTNNNNNAGG 1 cut(s) 1290
BstF5I GGATG 5 cut(s) 167, 301, 849, 1568, 1732
BstFNI CGCG 2 cut(s) 232, 260
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 9 cut(s) 106, 307, 366, 432, 446, 490, 815, 1051, 1732
BstMBI GATC 9 cut(s) 103, 304, 363, 429, 443, 487, 812, 1048, 1729
BstMWI GCNNNNNNNGC 5 cut(s) 146, 155, 246, 875, 1651
BstNI CCWGG 2 cut(s) 284, 1695
BstNSI RCATGY 4 cut(s) 464, 500, 1184, 1268
BstPI GGTNACC 1 cut(s) 1697
BstSCI CCNGG 3 cut(s) 282, 342, 1693
BstSFI CTRYAG 1 cut(s) 115
BstUI CGCG 2 cut(s) 232, 260
BstV1I GCAGC 4 cut(s) 71, 619, 856, 1887
BstV2I GAAGAC 3 cut(s) 231, 370, 1632
BstX2I RGATCY 2 cut(s) 363, 443
BstXI CCANNNNNNTGG 1 cut(s) 130
BstYI RGATCY 2 cut(s) 363, 443
Bsu15I ATCGAT 1 cut(s) 1743
BsuI GTATCC 2 cut(s) 127, 272
BsuRI GGCC 5 cut(s) 249, 648, 749, 1285, 1667
BsuTUI ATCGAT 1 cut(s) 1743
BtsCI GGATG 5 cut(s) 167, 301, 849, 1568, 1732
BtsI GCAGTG 2 cut(s) 614, 939
BtsIMutI CAGTG 5 cut(s) 124, 614, 657, 939, 1597
Cac8I GCNNGC 1 cut(s) 1266
CaiI CAGNNNCTG 1 cut(s) 632
CfoI GCGC 1 cut(s) 234
ClaI ATCGAT 1 cut(s) 1743
Csp6I GTAC 7 cut(s) 777, 1070, 1184, 1553, 1827, 2021, 2045
CviQI GTAC 7 cut(s) 777, 1070, 1184, 1553, 1827, 2021, 2045
DdeI CTNAG 6 cut(s) 740, 1309, 1454, 1856, 1871, 1928
DpnI GATC 9 cut(s) 105, 306, 365, 431, 445, 489, 814, 1050, 1731
DpnII GATC 9 cut(s) 103, 304, 363, 429, 443, 487, 812, 1048, 1729
DraI TTTAAA 1 cut(s) 1950
EaeI YGGCCR 3 cut(s) 646, 747, 1665
Eam1104I CTCTTC 2 cut(s) 169, 540
EarI CTCTTC 2 cut(s) 169, 540
Ecl136II GAGCTC 2 cut(s) 1252, 1885
Eco130I CCWWGG 1 cut(s) 2040
Eco24I GRGCYC 2 cut(s) 1254, 1887
Eco53kI GAGCTC 2 cut(s) 1252, 1885
Eco57I CTGAAG 3 cut(s) 199, 557, 1452
Eco91I GGTNACC 1 cut(s) 1697
EcoICRI GAGCTC 2 cut(s) 1252, 1885
EcoNI CCTNNNNNAGG 1 cut(s) 1290
EcoO65I GGTNACC 1 cut(s) 1697
EcoRII CCWGG 2 cut(s) 282, 1693
EcoT14I CCWWGG 1 cut(s) 2040
EcoT22I ATGCAT 1 cut(s) 1647
EcoT38I GRGCYC 2 cut(s) 1254, 1887
ErhI CCWWGG 1 cut(s) 2040
FalI AAGNNNNNCTT 4 cut(s) 666, 698, 963, 995
Fnu4HI GCNGC 5 cut(s) 85, 261, 633, 870, 1876
FokI GGATG 5 cut(s) 154, 308, 856, 1575, 1739
FriOI GRGCYC 2 cut(s) 1254, 1887
Fsp4HI GCNGC 5 cut(s) 85, 261, 633, 870, 1876
FspBI CTAG 7 cut(s) 959, 1247, 1346, 1475, 1556, 1818, 1988
GlaI GCGC 1 cut(s) 233
GluI GCNGC 5 cut(s) 85, 261, 633, 870, 1876
GsaI CCCAGC 1 cut(s) 1936
HaeIII GGCC 5 cut(s) 249, 648, 749, 1285, 1667
HapII CCGG 2 cut(s) 343, 1223
HhaI GCGC 1 cut(s) 234
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HincII GTYRAC 1 cut(s) 700
HindII GTYRAC 1 cut(s) 700
HindIII AAGCTT 1 cut(s) 1462
HinfI GANTC 4 cut(s) 398, 1004, 1587, 1785
HpaII CCGG 2 cut(s) 343, 1223
HphI GGTGA 4 cut(s) 233, 436, 569, 1691
Hpy166II GTNNAC 5 cut(s) 700, 779, 950, 1204, 1604
Hpy188I TCNGA 8 cut(s) 108, 218, 537, 988, 1041, 1312, 1457, 1684
Hpy8I GTNNAC 5 cut(s) 700, 779, 950, 1204, 1604
Hpy99I CGWCG 1 cut(s) 1547
HpyCH4III ACNGT 2 cut(s) 119, 1331
HpyCH4IV ACGT 2 cut(s) 580, 1542
HpyCH4V TGCA 8 cut(s) 441, 635, 944, 970, 1115, 1577, 1645, 1801
HpyF10VI GCNNNNNNNGC 5 cut(s) 146, 155, 246, 875, 1651
HpyF3I CTNAG 6 cut(s) 740, 1309, 1454, 1856, 1871, 1928
HpySE526I ACGT 2 cut(s) 580, 1542
HspAI GCGC 1 cut(s) 232
Kpn2I TCCGGA 1 cut(s) 1222
Kzo9I GATC 9 cut(s) 103, 304, 363, 429, 443, 487, 812, 1048, 1729
LmnI GCTCC 3 cut(s) 25, 1102, 2010
Lsp1109I GCAGC 4 cut(s) 71, 619, 856, 1887
LweI GCATC 5 cut(s) 561, 1041, 1598, 1931, 1992
MaeI CTAG 7 cut(s) 959, 1247, 1346, 1475, 1556, 1818, 1988
MaeII ACGT 2 cut(s) 580, 1542
MaeIII GTNAC 2 cut(s) 655, 1697
MalI GATC 9 cut(s) 105, 306, 365, 431, 445, 489, 814, 1050, 1731
MboI GATC 9 cut(s) 103, 304, 363, 429, 443, 487, 812, 1048, 1729
MfeI CAATTG 2 cut(s) 1132, 1406
MflI RGATCY 2 cut(s) 363, 443
MhlI GDGCHC 2 cut(s) 1254, 1887
MlsI TGGCCA 3 cut(s) 648, 749, 1667
MluNI TGGCCA 3 cut(s) 648, 749, 1667
MlyI GAGTC 2 cut(s) 1013, 1779
MmeI TCCRAC 1 cut(s) 811
Mox20I TGGCCA 3 cut(s) 648, 749, 1667
Mph1103I ATGCAT 1 cut(s) 1647
MroI TCCGGA 1 cut(s) 1222
MroXI GAANNNNTTC 1 cut(s) 531
MscI TGGCCA 3 cut(s) 648, 749, 1667
MseI TTAA 4 cut(s) 266, 1919, 1949, 1974
MslI CAYNNNNRTG 2 cut(s) 117, 128
Msp20I TGGCCA 3 cut(s) 648, 749, 1667
MspA1I CMGCKG 2 cut(s) 84, 869
MspI CCGG 2 cut(s) 343, 1223
MspR9I CCNGG 3 cut(s) 284, 344, 1695
MunI CAATTG 2 cut(s) 1132, 1406
Mva1269I GAATGC 1 cut(s) 1117
MvaI CCWGG 2 cut(s) 284, 1695
MvnI CGCG 2 cut(s) 232, 260
MwoI GCNNNNNNNGC 5 cut(s) 146, 155, 246, 875, 1651
NciI CCSGG 1 cut(s) 344
NdeII GATC 9 cut(s) 103, 304, 363, 429, 443, 487, 812, 1048, 1729
NlaIV GGNNCC 1 cut(s) 2038
NmuCI GTSAC 2 cut(s) 655, 1697
NsiI ATGCAT 1 cut(s) 1647
NspI RCATGY 4 cut(s) 464, 500, 1184, 1268
OliI CACNNNNGTG 1 cut(s) 117
PaeI GCATGC 1 cut(s) 1268
PciI ACATGT 3 cut(s) 460, 496, 1180
PctI GAATGC 1 cut(s) 1117
PdmI GAANNNNTTC 1 cut(s) 531
PfeI GAWTC 2 cut(s) 398, 1587
PflFI GACNNNGTC 1 cut(s) 1541
PkrI GCNGC 5 cut(s) 86, 262, 634, 871, 1877
PleI GAGTC 2 cut(s) 1012, 1779
PpsI GAGTC 2 cut(s) 1012, 1779
PscI ACATGT 3 cut(s) 460, 496, 1180
PsiI TTATAA 1 cut(s) 885
Psp124BI GAGCTC 2 cut(s) 1254, 1887
Psp6I CCWGG 2 cut(s) 282, 1693
PspEI GGTNACC 1 cut(s) 1697
PspFI CCCAGC 1 cut(s) 1932
PspGI CCWGG 2 cut(s) 282, 1693
PspN4I GGNNCC 1 cut(s) 2038
PsrI GAACNNNNNNTAC 2 cut(s) 45, 77
PstNI CAGNNNCTG 1 cut(s) 632
PsuI RGATCY 2 cut(s) 363, 443
PsyI GACNNNGTC 1 cut(s) 1541
PvuII CAGCTG 1 cut(s) 869
RsaI GTAC 7 cut(s) 778, 1071, 1185, 1554, 1828, 2022, 2046
RsaNI GTAC 7 cut(s) 777, 1070, 1184, 1553, 1827, 2021, 2045
RseI CAYNNNNRTG 2 cut(s) 117, 128
SacI GAGCTC 2 cut(s) 1254, 1887
SaqAI TTAA 4 cut(s) 266, 1919, 1949, 1974
SatI GCNGC 5 cut(s) 85, 261, 633, 870, 1876
Sau3AI GATC 9 cut(s) 103, 304, 363, 429, 443, 487, 812, 1048, 1729
ScaI AGTACT 1 cut(s) 1554
SchI GAGTC 2 cut(s) 1013, 1779
ScrFI CCNGG 3 cut(s) 284, 344, 1695
SduI GDGCHC 2 cut(s) 1254, 1887
SfaNI GCATC 5 cut(s) 561, 1041, 1598, 1931, 1992
SfcI CTRYAG 1 cut(s) 115
SmiMI CAYNNNNRTG 2 cut(s) 117, 128
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
SpeI ACTAGT 1 cut(s) 1987
SphI GCATGC 1 cut(s) 1268
SsiI CCGC 5 cut(s) 82, 138, 260, 395, 2005
SspI AATATT 2 cut(s) 474, 706
SspMI CTAG 7 cut(s) 959, 1247, 1346, 1475, 1556, 1818, 1988
SstI GAGCTC 2 cut(s) 1254, 1887
StyD4I CCNGG 3 cut(s) 282, 342, 1693
StyI CCWWGG 1 cut(s) 2040
TaaI ACNGT 2 cut(s) 119, 1331
TaiI ACGT 2 cut(s) 583, 1545
TaqI TCGA 5 cut(s) 351, 359, 1732, 1743, 1771
TatI WGTACW 3 cut(s) 1183, 1552, 1826
TauI GCSGC 1 cut(s) 263
TfiI GAWTC 2 cut(s) 398, 1587
Tru1I TTAA 4 cut(s) 266, 1919, 1949, 1974
Tru9I TTAA 4 cut(s) 266, 1919, 1949, 1974
TscAI CASTG 5 cut(s) 124, 614, 664, 946, 1597
TseFI GTSAC 2 cut(s) 655, 1697
TseI GCWGC 4 cut(s) 84, 632, 869, 1875
Tsp45I GTSAC 2 cut(s) 655, 1697
TspDTI ATGAA 8 cut(s) 156, 740, 884, 1041, 1110, 1191, 1244, 1862
TspGWI ACGGA 2 cut(s) 528, 1589
TspRI CASTG 5 cut(s) 124, 614, 664, 946, 1597
Tth111I GACNNNGTC 1 cut(s) 1541
XagI CCTNNNNNAGG 1 cut(s) 1290
XapI RAATTY 4 cut(s) 834, 891, 1568, 1688
XbaI TCTAGA 1 cut(s) 1246
XceI RCATGY 4 cut(s) 464, 500, 1184, 1268
XmnI GAANNNNTTC 1 cut(s) 531
XspI CTAG 7 cut(s) 959, 1247, 1346, 1475, 1556, 1818, 1988
ZrmI AGTACT 1 cut(s) 1554
Zsp2I ATGCAT 1 cut(s) 1647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.