Rw7G034540

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
51253173 .. 51257393
4221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G034540.1

Sequence Viewer

Length: 3519 bp
ATGGCTAAAACGAAAGCTCAAGAAGCTTTGTCTCCATCTTCGTCTTCTTCTTCTTCAAAATCAAGACATTGGATGTATGACGTGTTCCTGAGCTTCAGAGGCAAAGACACACGCAACACCTTCACCGGCCACCTCTACGCGGCACTGAAACAGGCCGGAGTCAACGCCTTCATTGACGACAACGAACTCAGAAGAGGGGAAGACATAGCAGCCGAACTGGTGCGGGCAATCCAAGGGTCGAGAATCGCTGTGATCGTCTTCTCGAAGAGGTATGGGGATTCGGGTTGGTGTCTGGAGGAGTTGGTGAAGATTATGGAGTGCAGAAGAACGCTGAGGCAGATGGTTTTCCCTATTTTCTTTGACGTGGATCCTTCCAGTGTGAGAAGACAAACTGGTAGTTTCGCAGAGGCGTTTCAGAAACATGAAGAGCGTTATATGGAAAAGGCACTCAAGTGGAGAGCTGCTCTTACTGAAGCCGCAAATTTGTCTGGCTGGGATCTGAGTAACACTGCAGATGGGCATGAAGCAAAGTTTATCACCAAAATTGTTGCGGAGATTACCAGACACTTGAACAACACACACCTATTTGAAGCTGTGTACCCGGTTGGAATCGATTCTCGGGTAGAAGATATGAGTACGCATTTAGGTGCTGGACTGGATGATGTTCGTATGGTTGGAATTTGGGGGATGGGTGGAATAGGGAAAACAACTATTGCCAAAGCCGTATATAACAAATTTTGTGATAGCTTTGAAGGTAGTAGTTTCCTGGCAAACGTTAGGGAAACTACAAAACAACCAAATGGTCTTGTTCGTTTGCAAGAACAGCTTCTTTGTGATATCTTGAAAACAACCAAGATAAAGGTTGGTAGTGTTGATAGAGGGATCAATCTGATAAAAGATAGACTTCGATGTAGAAGGGTACTTGTCATAATTGATGATATAGATCAACTGGACCAGCAATATGCAATAGCTGGAAACAGTGACTGGTTTGGTTTAGGAAGTAGACTTGTTATCACAACCCGAGATGAACGTTTGCTAAATCAACTTGGAGTGGATTCAATATATCCGGCTCCAGAAATGAATGAAACAGAGGCTCTTGAACTCTTTAGTTGGCATGCCTTCAGAAATAGTCATCCTGAGAAAGAATATTCTGAACTTTCAAGTAGTATAGTTGCTTGCTATGGAGGCTTGCCACTAGCTCTTGAAGTTTTAGGATCTTTTCTGTTTGGAAGAAGCATGGCCCAGTGGAAAAGTGCATTGGAGAAATGGAAGACAATTCCTCATGGCCAAATTCAGGAAAAGCTCAGAGTAAGCTTTGACGGCCTAAATGATGAGACAGAGAAGAATATATTTCTTGATATATCTTGTTTCTTTATAGGAATGGACAAGAACTATGTCAGCCAAATATTGGATGGTTGTGGTTTTTTTGCAGAAATAGGAATCAGTGTCCTCCTTGAGCGACGCCTTGTAACTGTGTGTGAAAAGAACAAGCTGATGATGCATGATTTGCTTCGAGACATGGGCAGAGAAATTGTTCGTGCAAAATCCCCTGGTGACCCTGGAAAGTGTAGTAGATTGTGGCATCCTAAAGATGTTACAGATGTATTGACAGAACATTCTGGAACTGAAGAAATTCAAGGGCTCACTCTAAGTTTGCTAGAATCCGATAAGACTAGCTTCAGTACACAAGCATTTGCAAATATGAAGAGATTAAGATTGCTCCAACTCAAATTCGTGCAGCTCAGTGGAGGCTATGAGCATCTTTCTAACACGTTAAGGTGGCTGTGCTGGCACGGGTTCCCTCATAAGTTCCTACCGAACGACTTTAATCTACCAAATGTAGTTGCTATTGACCTGCAATATAGCAAACTTGTACAAGTTTGGACGGAATCTCGGATGCTTAAGAAGCTCAAGATTCTAAATCTCAGTCATTCCCATTACCTGAGACAATCACCAGACTTTTCAAAACTTCCGAAACTCGAGAAATTGATACTCAAAGGCTGTAAGAGTTTGTCCGAGGTTCACCAGTCCATTGGAGACCTTGAAGGACTTGCTTTGGTAAATCTTCAAGACTGTAAGATGCTCAGGGAGCTCCCAGTGACTTTCTCCAAGTTGAAAGCTATTGAAACTCTTATTCTTTCTGGGTGTGCAAAATTTGAAAAGTTGACTAAGGACTTAGGTGAGATGGTATCCTTGAGAACTCTGCTAGCAGATGACACAGCCATAAGAGAAATACCATCTTCCATAACACAGTTGAAGAACCTTGAATGTTTATCTTTATGTGGCCTGAAACAACCACCATTAAACTTGTTTCCAACTCGCTTCTGGTCTTTTCTGTTGCCAAGAAGATGTATAACATTTCCTCCTTCATTATTTGGTTTAGGGGCTTTAAAAGAATTGTATGTTAGAGACTGCAATTTAACTGACAGTTCAATTCCTAAGGATATTGGGAATCTATCTTCTTTGGAAGAACTGGATCTTGGAGGAAACTGTTTTGGTAGCCTTCCATGTCTCGGTGGTCTTTGCAAGCTTAAAGATCTCACATTGGATAGTTGCAATTTAACTGAAGCAGCAATTGAAGCTACGAATCTTTGGAGTCTACCATCTCTAGATTATTTGGATCTAAGTTGCAATAGTTTTCGTAGCCTTCCCAGCCTCAGTGGACTTTCCGAGCTAGTCACTCTAATTTTGGATAATTGCACAAGTCTCCATGCAATCCCAGAATTACCAATAAATTTGGCGGTGCTGAGAGCAGATGGCTGCATTGCACTGGAAAGAATGCCAAATTTTTCAGAAATGTCGAGCTTGTGTCGGTTGAATCTCAGAGATTCTTCCAAACTAATTGAGATTCCCGGCGTGGATAAGCCATCCAAGTCCATGCTACAGATTCGAATGGAAGGGTGCACAAATATCAGTGAAACCGTTAGGGAGAGCATACTACTACAGGGGTGGAGTTTTGCTAGCAACTTTGGTGGTATTTATCTCCCAGGAAACGACATTCCTGAGTGGTTCACATATGTCGATGATGGTGGCCGTGTCTCTTTTCAAGTGCCTCAAAATGTTGGCTGTGACCTAAAAGCATTGACCGTATGCATCGTTTATTCTTGTTTTCCAAACAGTCAATCTATGAATTATATTTCCGTATTTGTTATAAATCACACCAAGCTGACTAGTTTTTTCGTCCAACCATCGTCACCCAATAACATTATTTCCAGTGGAGTTATTTGGCAGGGACGTTTGTCAAACAGAACGTTTAATTTGGAAGGTGGAGACTTCGTAGAGGTTTGTGTAGCAATTAATTCTTGCTTCCAAGTGAAGAAAATAGGGGTCAATCTTGTATTGGACGGATTTATCACAGTAGAGGTGCATGAGTGTGAATCTCTCCCATATGCTTATTTTCGTCGTGACAAAGATGATGAGGGAGAAATCACATCCAAAAGTGGTGTTGCTGATAATGTGGCAGGACCAAGCCATTACTCATCTGATTCCAGTAGTGGAGTACAGATTAATTATGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1172

Amino Acids

130.97

Weight (kDa)

6.1

Isoelectric Point (pI)

47.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 26 - 193 3e-56 TIR domain
TIR_2 PF13676 28 - 130 4e-17 TIR domain
NB-ARC PF00931 208 - 377 5.1e-14 NB-ARC domain
WHD_ROQ1 PF23282 445 - 516 4.7e-20 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36930 AT5G36930 AT5G36930 AT5G36930
fragaria_vesca FvH4_3g45361 FvH4_3g45380 FvH4_5g21061 FvH4_5g21062 FvH4_5g21063 FvH4_5g32050 FvH4_5g32970 FvH4_5g32990 FvH4_5g34190 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34211 FvH4_5g34240 FvH4_5g34250
malus_domestica MD00G1011700.v1.1 MD00G1026100.v1.1 MD00G1026500.v1.1 MD00G1027000.v1.1 MD00G1027100.v1.1 MD00G1027700.v1.1 MD00G1027800.v1.1 MD00G1028000.v1.1 MD00G1220000.v1.1 MD02G1024400.v1.1 MD02G1024800.v1.1 MD02G1026000.v1.1 MD02G1026100.v1.1 MD02G1031800.v1.1 MD02G1038500.v1.1 MD02G1038700.v1.1 MD02G1039200.v1.1 MD02G1040600.v1.1 MD02G1040900.v1.1 MD02G1041200.v1.1 MD02G1041300.v1.1 MD02G1041700.v1.1 MD02G1042000.v1.1 MD02G1043800.v1.1 MD02G1043900.v1.1 MD02G1044300.v1.1 MD02G1045200.v1.1 MD02G1045300.v1.1 MD02G1051200.v1.1 MD02G1052200.v1.1 MD02G1052800.v1.1 MD02G1053100.v1.1 MD02G1053600.v1.1 MD02G1055500.v1.1 MD02G1063300.v1.1 MD02G1063400.v1.1 MD02G1063800.v1.1 MD02G1306500.v1.1 MD02G1306600.v1.1 MD02G1306700.v1.1 MD02G1306900.v1.1 MD02G1307200.v1.1 MD04G1011700.v1.1 MD05G1315400.v1.1 MD05G1316000.v1.1 MD05G1316700.v1.1 MD05G1317000.v1.1 MD05G1317300.v1.1 MD05G1317600.v1.1 MD05G1317700.v1.1 MD07G1102800.v1.1 MD07G1238200.v1.1 MD08G1175900.v1.1 MD08G1203600.v1.1 MD09G1024200.v1.1 MD09G1039600.v1.1 MD09G1044800.v1.1 MD09G1045100.v1.1 MD10G1038700.v1.1 MD10G1039000.v1.1 MD10G1039200.v1.1 MD10G1040000.v1.1 MD10G1040200.v1.1 MD10G1040600.v1.1 MD10G1040800.v1.1 MD10G1297300.v1.1 MD12G1247500.v1.1 MD12G1247900.v1.1 MD12G1248300.v1.1 MD12G1248800.v1.1 MD15G1103700.v1.1 MD15G1103800.v1.1 MD15G1104000.v1.1 MD15G1179600.v1.1 MD15G1182500.v1.1 MD16G1068200.v1.1 MD16G1068300.v1.1 MD17G1024600.v1.1 MD17G1024700.v1.1 MD17G1025000.v1.1 MD17G1025900.v1.1
prunus_persica Prupe.1G539800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G557100_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557300_v2.0.a1
pyrus_communis pycom02g02080 pycom02g02090 pycom02g02110 pycom02g03220 pycom02g03260 pycom02g03370 pycom02g03390 pycom02g03410 pycom02g03420 pycom02g03450 pycom02g03500 pycom02g03730 pycom02g03770 pycom02g04400 pycom02g04410 pycom02g04430 pycom02g04450 pycom02g04460 pycom02g04490 pycom02g05200 pycom02g25710 pycom02g25750 pycom02g25790 pycom02g25810 pycom02g25830 pycom04g00920 pycom04g00930 pycom04g00940 pycom05g29300 pycom05g29310 pycom05g29380 pycom05g29410 pycom07g06310 pycom07g21420 pycom08g15070 pycom08g17540 pycom08g17560 pycom08g17570 pycom10g02670 pycom10g02680 pycom10g02700 pycom10g02770 pycom10g02790 pycom10g02800 pycom10g02810 pycom10g25020 pycom10g25030 pycom10g25050 pycom10g25080 pycom111g01990 pycom111g02000 pycom111g02030 pycom111g02040 pycom111g02050 pycom111g02060 pycom12g22710 pycom12g22720 pycom12g22730 pycom12g22740 pycom12g22750 pycom12g22770 pycom12g22780 pycom12g22790 pycom12g22800 pycom12g22810 pycom12g22830 pycom12g22840 pycom12g22860 pycom15g09440 pycom15g09480 pycom15g16120 pycom15g32380 pycom16g05970 pycom17g02100
rosa_chinensis RchiOBHm_Chr2g0144661 RchiOBHm_Chr4g0407491 RchiOBHm_Chr4g0407501 RchiOBHm_Chr4g0412381 RchiOBHm_Chr7g0208191 RchiOBHm_Chr7g0208201 RchiOBHm_Chr7g0208211 RchiOBHm_Chr7g0208221 RchiOBHm_Chr7g0228071 RchiOBHm_Chr7g0228121 RchiOBHm_Chr7g0230971 RchiOBHm_Chr7g0230981 RchiOBHm_Chr7g0233901 RchiOBHm_Chr7g0233951 RchiOBHm_Chr7g0233961 RchiOBHm_Chr7g0233991 RchiOBHm_Chr7g0234021 RchiOBHm_Chr7g0234151 RchiOBHm_Chr7g0234161 RchiOBHm_Chr7g0234241 RchiOBHm_Chr7g0234501 RchiOBHm_Chr7g0234641 RchiOBHm_Chr7g0234771 RchiOBHm_Chr7g0234781 RchiOBHm_Chr7g0234991 RchiOBHm_Chr7g0241291 RchiOBHm_Chr7g0241301
rosa_laevigata RLG00000001186 RLG00000001187 RLG00000001212 RLG00000001226 RLG00000001233 RLG00000001590 RLG00000003242 RLG00000003243 RLG00000003249 RLG00000008688 RLG00000008690
rosa_multiflora Rmu_co7966574.1_g000001 Rmu_co8120830.1_g000001 Rmu_co8142226.1_g000001 Rmu_co8293083.1_g000001 Rmu_co8351227.1_g000001 Rmu_co8380159.1_g000001 Rmu_co8456505.1_g000001 Rmu_sc0000676.1_g000025 Rmu_sc0000706.1_g000018 Rmu_sc0000706.1_g000040 Rmu_sc0000740.1_g000029 Rmu_sc0000740.1_g000032 Rmu_sc0000740.1_g000037 Rmu_sc0000740.1_g000040 Rmu_sc0000762.1_g000003 Rmu_sc0000762.1_g000019 Rmu_sc0000762.1_g000034 Rmu_sc0000762.1_g000069 Rmu_sc0000892.1_g000001 Rmu_sc0000945.1_g000040 Rmu_sc0001913.1_g000037 Rmu_sc0001913.1_g000041 Rmu_sc0001913.1_g000049 Rmu_sc0002775.1_g000017 Rmu_sc0002775.1_g000018 Rmu_sc0002775.1_g000020 Rmu_sc0002775.1_g000021 Rmu_sc0002775.1_g000022 Rmu_sc0002775.1_g000025 Rmu_sc0002775.1_g000026 Rmu_sc0002775.1_g000028 Rmu_sc0002775.1_g000030 Rmu_sc0004858.1_g000002 Rmu_sc0004864.1_g000022 Rmu_sc0005038.1_g000023 Rmu_sc0005840.1_g000014 Rmu_sc0006724.1_g000003 Rmu_sc0006824.1_g000005 Rmu_sc0007869.1_g000003 Rmu_sc0007869.1_g000005 Rmu_sc0007869.1_g000008 Rmu_sc0008646.1_g000007 Rmu_sc0009637.1_g000009 Rmu_sc0010500.1_g000002 Rmu_sc0010500.1_g000012 Rmu_sc0012403.1_g000025 Rmu_sc0013768.1_g000025 Rmu_sc0015625.1_g000001 Rmu_sc0019715.1_g000001 Rmu_sc0021133.1_g000002 Rmu_sc0021904.1_g000001 Rmu_sc0021904.1_g000003 Rmu_sc0021904.1_g000004 Rmu_sc0022054.1_g000001 Rmu_sc0026025.1_g000001 Rmu_sc0036828.1_g000002 Rmu_sc0041808.1_g000001 Rmu_ssc0000012.1_g000001
rosa_roxburghii Rroxscaffold_3G00226370 Rroxscaffold_3G00226860 Rroxscaffold_3G00226900 Rroxscaffold_3G00226930 Rroxscaffold_3G00226940 Rroxscaffold_3G00226970 Rroxscaffold_3G00226980 Rroxscaffold_3G00231530 Rroxscaffold_3G00237090 Rroxscaffold_3G00250760 Rroxscaffold_3G00250800
rosa_rugosa Rorug04G0082300 Rorug07G0101800 Rorug07G0102000 Rorug07G0102100 Rorug07G0221200 Rorug07G0245700 Rorug07G0245700 Rorug07G0245700 Rorug07G0263900 Rorug07G0264000 Rorug07G0264000 Rorug07G0264500 Rorug07G0282900 Rorug07G0282900 Rorug07G0283100 Rorug07G0283200.1 Rorug07G0283300 Rorug07G0283900 Rorug07G0284000 Rorug07G0284100 Rorug07G0284300 Rorug07G0284400 Rorug07G0284500 Rorug07G0285000 Rorug07G0285200 Rorug07G0285300 Rorug07G0285500 Rorug07G0286800 Rorug07G0286900 Rorug07G0287100 Rorug07G0287200
rosa_samantha Rh7AG236100 Rh7AG236200 Rh7AG236300 Rh7AG440000 Rh7AG440100 Rh7BG411900 Rh7BG412000 Rh7BG412600 Rh7CG251300 Rh7CG417700 Rh7CG460100 Rh7DG242100 Rh7DG242200 Rh7DG242300 Rh7DG429300
rosa_wichuraiana Rw0G005070 Rw0G010780 Rw0G012530 Rw7G020110 Rw7G020160 Rw7G020170 Rw7G033210 Rw7G033230 Rw7G033250 Rw7G034540 Rw7G035150 Rw7G036190 Rw7G036210 Rw7G036260 Rw7G036270 Rw7G036290 Rw7G036300 Rw7G036310 Rw7G036350 Rw7G036360 Rw7G036440 Rw7G036510 Rw7G036530 Rw7G036570 Rw7G036590 Rw7G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3152
Acc36I ACCTGC 1 cut(s) 1863
AccB7I CCANNNNNTGG 1 cut(s) 1408
AccI GTMKAC 2 cut(s) 1003, 2599
AccII CGCG 1 cut(s) 140
AciI CCGC 5 cut(s) 140, 223, 477, 551, 2741
AclI AACGTT 3 cut(s) 774, 1030, 3251
AclWI GGATC 7 cut(s) 362, 375, 504, 890, 1222, 2484, 2628
AcoI YGGCCR 3 cut(s) 127, 1285, 3031
AcsI RAATTY 9 cut(s) 481, 678, 734, 1290, 1632, 1730, 2153, 2734, 2785
AcuI CTGAAG 6 cut(s) 79, 492, 1105, 1647, 1663, 2586
AcyI GRCGYC 1 cut(s) 1462
AfaI GTAC 6 cut(s) 599, 637, 921, 1684, 1875, 3501
AfiI CCNNNNNNNGG 4 cut(s) 139, 1294, 1408, 2513
AflII CTTAAG 1 cut(s) 1901
AflIII ACRYGT 2 cut(s) 81, 1770
AhlI ACTAGT 1 cut(s) 3170
AjiI CACGTC 2 cut(s) 82, 364
AjnI CCWGG 4 cut(s) 765, 1549, 1558, 2986
AjuI GAANNNNNNNTTGG 4 cut(s) 1241, 1273, 2463, 2495
AleI CACNNNNGTG 1 cut(s) 451
Alw21I GWGCWC 2 cut(s) 2094, 2906
Alw44I GTGCAC 1 cut(s) 2902
AlwI GGATC 7 cut(s) 362, 375, 504, 890, 1222, 2484, 2628
AlwNI CAGNNNCTG 1 cut(s) 984
Ama87I CYCGRG 3 cut(s) 618, 1020, 1979
AoxI GGCC 7 cut(s) 127, 153, 1239, 1285, 1321, 2284, 3031
ApaLI GTGCAC 1 cut(s) 2902
ApeKI GCWGC 5 cut(s) 209, 461, 1738, 2570, 2760
ApoI RAATTY 9 cut(s) 481, 678, 734, 1290, 1632, 1730, 2153, 2734, 2785
AseI ATTAAT 2 cut(s) 3297, 3507
Asp700I GAANNNNTTC 4 cut(s) 613, 825, 1533, 1632
AspS9I GGNCC 3 cut(s) 952, 1240, 3464
AsuC2I CCSGG 2 cut(s) 602, 2853
AsuHPI GGTGA 8 cut(s) 115, 316, 529, 1565, 1944, 2015, 2192, 3186
AsuII TTCGAA 1 cut(s) 2890
AsuNHI GCTAGC 2 cut(s) 2206, 2960
AvaI CYCGRG 3 cut(s) 618, 1020, 1979
AvaII GGWCC 2 cut(s) 952, 3464
AxyI CCTNAGG 1 cut(s) 2439
BaeGI GKGCMC 1 cut(s) 2906
BalI TGGCCA 1 cut(s) 1287
BamHI GGATCC 1 cut(s) 367
BanII GRGCYC 2 cut(s) 1644, 2094
BbsI GAAGAC 5 cut(s) 36, 207, 250, 391, 1277
Bbv12I GWGCWC 2 cut(s) 2094, 2906
BbvCI CCTCAGC 1 cut(s) 332
BbvI GCAGC 5 cut(s) 221, 448, 1750, 2582, 2747
BceAI ACGGC 3 cut(s) 707, 1336, 3018
BciT130I CCWGG 4 cut(s) 767, 1551, 1560, 2988
BciVI GTATCC 1 cut(s) 2200
BcnI CCSGG 2 cut(s) 602, 2853
BcuI ACTAGT 1 cut(s) 3170
BfaI CTAG 8 cut(s) 1196, 1658, 1674, 2207, 2609, 2675, 2961, 3171
BfmI CTRYAG 3 cut(s) 510, 2882, 2942
BfrI CTTAAG 1 cut(s) 1901
BfuAI ACCTGC 1 cut(s) 1863
BfuI GTATCC 1 cut(s) 2200
BglII AGATCT 1 cut(s) 2536
BisI GCNGC 7 cut(s) 141, 210, 462, 477, 1739, 2571, 2761
BlsI GCNGC 7 cut(s) 142, 211, 463, 478, 1740, 2572, 2762
Bme1390I CCNGG 6 cut(s) 602, 767, 1551, 1560, 2853, 2988
Bme18I GGWCC 2 cut(s) 952, 3464
BmeT110I CYCGRG 3 cut(s) 618, 1020, 1979
BmgBI CACGTC 2 cut(s) 82, 364
BmgT120I GGNCC 3 cut(s) 952, 1240, 3464
BmiI GGNNCC 3 cut(s) 369, 1071, 1799
BmrFI CCNGG 6 cut(s) 602, 767, 1551, 1560, 2853, 2988
BmrI ACTGGG 2 cut(s) 1237, 2090
BmsI GCATC 6 cut(s) 1488, 1591, 1768, 1887, 2070, 3102
BmtI GCTAGC 2 cut(s) 2210, 2964
BmuI ACTGGG 2 cut(s) 1237, 2090
BoxI GACNNNNGTC 1 cut(s) 3238
BpiI GAAGAC 5 cut(s) 36, 207, 250, 391, 1277
BplI GAGNNNNNCTC 2 cut(s) 448, 480
BpmI CTGGAG 2 cut(s) 314, 1056
Bpu10I CCTNAGC 3 cut(s) 89, 332, 2084
Bpu14I TTCGAA 1 cut(s) 2890
BpuEI CTTGAG 4 cut(s) 434, 1475, 1895, 2215
BpuMI CCSGG 2 cut(s) 602, 2853
Bsa29I ATCGAT 1 cut(s) 612
BsaBI GATNNNNATC 1 cut(s) 942
BsaHI GRCGYC 1 cut(s) 1462
BsaI GGTCTC 1 cut(s) 2031
BsaJI CCNNGG 5 cut(s) 232, 1549, 1558, 2016, 2986
BsaXI ACNNNNNCTCC 4 cut(s) 2347, 2377, 3261, 3291
Bsc4I CCNNNNNNNGG 4 cut(s) 139, 1294, 1408, 2513
Bse118I RCCGGY 1 cut(s) 125
Bse21I CCTNAGG 1 cut(s) 2439
Bse3DI GCAATG 1 cut(s) 2763
Bse8I GATNNNNATC 1 cut(s) 942
BseBI CCWGG 4 cut(s) 767, 1551, 1560, 2988
BseCI ATCGAT 1 cut(s) 612
BseDI CCNNGG 5 cut(s) 232, 1549, 1558, 2016, 2986
BseGI GGATG 9 cut(s) 78, 664, 693, 1132, 1417, 1582, 1902, 2867, 3431
BseJI GATNNNNATC 1 cut(s) 942
BseLI CCNNNNNNNGG 4 cut(s) 139, 1294, 1408, 2513
BseMI GCAATG 1 cut(s) 2763
BseRI GAGGAG 1 cut(s) 311
BseSI GKGCMC 1 cut(s) 2906
BseXI GCAGC 5 cut(s) 221, 448, 1750, 2582, 2747
BseYI CCCAGC 2 cut(s) 492, 2651
BsgI GTGCAG 2 cut(s) 340, 1757
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 7 cut(s) 129, 155, 1241, 1287, 1323, 2286, 3033
BshVI ATCGAT 1 cut(s) 612
BsiHKAI GWGCWC 2 cut(s) 2094, 2906
BsiHKCI CYCGRG 3 cut(s) 618, 1020, 1979
BsiSI CCGG 5 cut(s) 126, 156, 602, 1067, 2853
BslFI GGGAC 1 cut(s) 3246
BslI CCNNNNNNNGG 4 cut(s) 139, 1294, 1408, 2513
BsmFI GGGAC 1 cut(s) 3246
BsmI GAATGC 1 cut(s) 2784
BsnI GGCC 7 cut(s) 129, 155, 1241, 1287, 1323, 2286, 3033
Bso31I GGTCTC 1 cut(s) 2031
BsoBI CYCGRG 3 cut(s) 618, 1020, 1979
Bsp119I TTCGAA 1 cut(s) 2890
Bsp1286I GDGCHC 3 cut(s) 1644, 2094, 2906
Bsp1407I TGTACA 1 cut(s) 1873
Bsp143I GATC 9 cut(s) 252, 367, 496, 882, 943, 1214, 2476, 2536, 2620
BspACI CCGC 5 cut(s) 140, 223, 477, 551, 2741
BspANI GGCC 7 cut(s) 129, 155, 1241, 1287, 1323, 2286, 3033
BspDI ATCGAT 1 cut(s) 612
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 3 cut(s) 369, 1071, 1799
BspMAI CTGCAG 1 cut(s) 514
BspMI ACCTGC 1 cut(s) 1863
BspOI GCTAGC 2 cut(s) 2210, 2964
BspPI GGATC 7 cut(s) 362, 375, 504, 890, 1222, 2484, 2628
BspQI GCTCTTC 1 cut(s) 420
BspT104I TTCGAA 1 cut(s) 2890
BspTI CTTAAG 1 cut(s) 1901
BspTNI GGTCTC 1 cut(s) 2031
BsrDI GCAATG 1 cut(s) 2763
BsrFI RCCGGY 1 cut(s) 125
BsrGI TGTACA 1 cut(s) 1873
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 5 cut(s) 232, 1549, 1558, 2016, 2986
BssMI GATC 9 cut(s) 252, 367, 496, 882, 943, 1214, 2476, 2536, 2620
BssNI GRCGYC 1 cut(s) 1462
BssT1I CCWWGG 1 cut(s) 232
Bst2UI CCWGG 4 cut(s) 767, 1551, 1560, 2988
Bst6I CTCTTC 4 cut(s) 187, 260, 420, 1700
BstACI GRCGYC 1 cut(s) 1462
BstAFI CTTAAG 1 cut(s) 1901
BstAPI GCANNNNNTGC 1 cut(s) 1507
BstAUI TGTACA 1 cut(s) 1873
BstBI TTCGAA 1 cut(s) 2890
BstC8I GCNNGC 8 cut(s) 225, 1116, 1177, 1190, 1790, 2208, 2528, 2962
BstEII GGTNACC 1 cut(s) 1553
BstF5I GGATG 9 cut(s) 78, 664, 693, 1132, 1417, 1582, 1902, 2867, 3431
BstFNI CGCG 1 cut(s) 140
BstKTI GATC 9 cut(s) 255, 370, 499, 885, 946, 1217, 2479, 2539, 2623
BstMBI GATC 9 cut(s) 252, 367, 496, 882, 943, 1214, 2476, 2536, 2620
BstNI CCWGG 4 cut(s) 767, 1551, 1560, 2988
BstNSI RCATGY 1 cut(s) 1118
BstPAI GACNNNNGTC 1 cut(s) 3238
BstPI GGTNACC 1 cut(s) 1553
BstSCI CCNGG 6 cut(s) 600, 765, 1549, 1558, 2851, 2986
BstSFI CTRYAG 3 cut(s) 510, 2882, 2942
BstSLI GKGCMC 1 cut(s) 2906
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 5 cut(s) 221, 448, 1750, 2582, 2747
BstV2I GAAGAC 5 cut(s) 36, 207, 250, 391, 1277
BstX2I RGATCY 6 cut(s) 367, 496, 1214, 2476, 2536, 2620
BstXI CCANNNNNNTGG 1 cut(s) 2033
BstYI RGATCY 6 cut(s) 367, 496, 1214, 2476, 2536, 2620
Bsu15I ATCGAT 1 cut(s) 612
Bsu36I CCTNAGG 1 cut(s) 2439
BsuI GTATCC 1 cut(s) 2200
BsuRI GGCC 7 cut(s) 129, 155, 1241, 1287, 1323, 2286, 3033
BsuTUI ATCGAT 1 cut(s) 612
BtrI CACGTC 2 cut(s) 82, 364
BtsCI GGATG 9 cut(s) 78, 664, 693, 1132, 1417, 1582, 1902, 2867, 3431
BtsI GCAGTG 1 cut(s) 507
BveI ACCTGC 1 cut(s) 1863
Cac8I GCNNGC 8 cut(s) 225, 1116, 1177, 1190, 1790, 2208, 2528, 2962
CaiI CAGNNNCTG 1 cut(s) 984
Cfr10I RCCGGY 1 cut(s) 125
Cfr13I GGNCC 3 cut(s) 952, 1240, 3464
ClaI ATCGAT 1 cut(s) 612
CseI GACGC 1 cut(s) 1470
Csp6I GTAC 6 cut(s) 598, 636, 920, 1683, 1874, 3500
CspCI CAANNNNNGTGG 2 cut(s) 2953, 2988
CviQI GTAC 6 cut(s) 598, 636, 920, 1683, 1874, 3500
DpnI GATC 9 cut(s) 254, 369, 498, 884, 945, 1216, 2478, 2538, 2622
DpnII GATC 9 cut(s) 252, 367, 496, 882, 943, 1214, 2476, 2536, 2620
DraI TTTAAA 1 cut(s) 2391
EaeI YGGCCR 3 cut(s) 127, 1285, 3031
Eam1104I CTCTTC 4 cut(s) 187, 260, 420, 1700
EarI CTCTTC 4 cut(s) 187, 260, 420, 1700
Ecl136II GAGCTC 1 cut(s) 2092
Eco130I CCWWGG 1 cut(s) 232
Eco24I GRGCYC 2 cut(s) 1644, 2094
Eco31I GGTCTC 1 cut(s) 2031
Eco32I GATATC 1 cut(s) 838
Eco47I GGWCC 2 cut(s) 952, 3464
Eco53kI GAGCTC 1 cut(s) 2092
Eco57I CTGAAG 6 cut(s) 79, 492, 1105, 1647, 1663, 2586
Eco81I CCTNAGG 1 cut(s) 2439
Eco88I CYCGRG 3 cut(s) 618, 1020, 1979
Eco91I GGTNACC 1 cut(s) 1553
EcoICRI GAGCTC 1 cut(s) 2092
EcoO65I GGTNACC 1 cut(s) 1553
EcoRII CCWGG 4 cut(s) 765, 1549, 1558, 2986
EcoRV GATATC 1 cut(s) 838
EcoT14I CCWWGG 1 cut(s) 232
EcoT22I ATGCAT 2 cut(s) 1503, 3095
EcoT38I GRGCYC 2 cut(s) 1644, 2094
ErhI CCWWGG 1 cut(s) 232
FalI AAGNNNNNCTT 6 cut(s) 810, 842, 888, 920, 1661, 1693
FaqI GGGAC 1 cut(s) 3246
FauI CCCGC 1 cut(s) 216
FauNDI CATATG 2 cut(s) 3016, 3388
FblI GTMKAC 2 cut(s) 1003, 2599
Fnu4HI GCNGC 7 cut(s) 141, 210, 462, 477, 1739, 2571, 2761
FokI GGATG 9 cut(s) 85, 671, 700, 1119, 1424, 1569, 1909, 2854, 3418
FriOI GRGCYC 2 cut(s) 1644, 2094
Fsp4HI GCNGC 7 cut(s) 141, 210, 462, 477, 1739, 2571, 2761
FspBI CTAG 8 cut(s) 1196, 1658, 1674, 2207, 2609, 2675, 2961, 3171
GluI GCNGC 7 cut(s) 141, 210, 462, 477, 1739, 2571, 2761
GsaI CCCAGC 2 cut(s) 496, 2655
GsuI CTGGAG 2 cut(s) 314, 1056
HaeIII GGCC 7 cut(s) 129, 155, 1241, 1287, 1323, 2286, 3033
HapII CCGG 5 cut(s) 126, 156, 602, 1067, 2853
HgaI GACGC 1 cut(s) 1470
Hin1I GRCGYC 1 cut(s) 1462
HincII GTYRAC 2 cut(s) 163, 2166
HindII GTYRAC 2 cut(s) 163, 2166
HindIII AAGCTT 3 cut(s) 24, 1312, 2528
HpaII CCGG 5 cut(s) 126, 156, 602, 1067, 2853
HphI GGTGA 8 cut(s) 115, 316, 529, 1565, 1944, 2015, 2192, 3186
Hpy99I CGWCG 2 cut(s) 1464, 3405
HpyCH4IV ACGT 7 cut(s) 81, 363, 774, 1030, 1772, 3235, 3251
HpySE526I ACGT 7 cut(s) 81, 363, 774, 1030, 1772, 3235, 3251
Hsp92I GRCGYC 1 cut(s) 1462
Kzo9I GATC 9 cut(s) 252, 367, 496, 882, 943, 1214, 2476, 2536, 2620
LguI GCTCTTC 1 cut(s) 420
LmnI GCTCC 4 cut(s) 1075, 1725, 2089, 2097
Lsp1109I GCAGC 5 cut(s) 221, 448, 1750, 2582, 2747
LweI GCATC 6 cut(s) 1488, 1591, 1768, 1887, 2070, 3102
MaeI CTAG 8 cut(s) 1196, 1658, 1674, 2207, 2609, 2675, 2961, 3171
MaeII ACGT 7 cut(s) 81, 363, 774, 1030, 1772, 3235, 3251
MalI GATC 9 cut(s) 254, 369, 498, 884, 945, 1216, 2478, 2538, 2622
MboI GATC 9 cut(s) 252, 367, 496, 882, 943, 1214, 2476, 2536, 2620
MfeI CAATTG 1 cut(s) 2574
MflI RGATCY 6 cut(s) 367, 496, 1214, 2476, 2536, 2620
MhlI GDGCHC 3 cut(s) 1644, 2094, 2906
MlsI TGGCCA 1 cut(s) 1287
MluNI TGGCCA 1 cut(s) 1287
MlyI GAGTC 2 cut(s) 168, 2605
MmeI TCCRAC 5 cut(s) 586, 655, 1747, 2339, 3208
Mox20I TGGCCA 1 cut(s) 1287
Mph1103I ATGCAT 2 cut(s) 1503, 3095
MroXI GAANNNNTTC 4 cut(s) 613, 825, 1533, 1632
MscI TGGCCA 1 cut(s) 1287
MslI CAYNNNNRTG 3 cut(s) 451, 645, 3372
Msp20I TGGCCA 1 cut(s) 1287
MspCI CTTAAG 1 cut(s) 1901
MspI CCGG 5 cut(s) 126, 156, 602, 1067, 2853
MspR9I CCNGG 6 cut(s) 602, 767, 1551, 1560, 2853, 2988
MunI CAATTG 1 cut(s) 2574
Mva1269I GAATGC 1 cut(s) 2784
MvaI CCWGG 4 cut(s) 767, 1551, 1560, 2988
MvnI CGCG 1 cut(s) 140
NciI CCSGG 2 cut(s) 602, 2853
NdeI CATATG 2 cut(s) 3016, 3388
NdeII GATC 9 cut(s) 252, 367, 496, 882, 943, 1214, 2476, 2536, 2620
NheI GCTAGC 2 cut(s) 2206, 2960
NlaIV GGNNCC 3 cut(s) 369, 1071, 1799
NmuCI GTSAC 7 cut(s) 980, 1553, 2098, 2677, 3068, 3192, 3404
NsiI ATGCAT 2 cut(s) 1503, 3095
NspI RCATGY 1 cut(s) 1118
NspV TTCGAA 1 cut(s) 2890
OliI CACNNNNGTG 1 cut(s) 451
PaeI GCATGC 1 cut(s) 1118
PaeR7I CTCGAG 1 cut(s) 1979
PciSI GCTCTTC 1 cut(s) 420
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PctI GAATGC 1 cut(s) 2784
PdmI GAANNNNTTC 4 cut(s) 613, 825, 1533, 1632
PflMI CCANNNNNTGG 1 cut(s) 1408
PkrI GCNGC 7 cut(s) 142, 211, 463, 478, 1740, 2572, 2762
PleI GAGTC 2 cut(s) 167, 2604
PpsI GAGTC 2 cut(s) 167, 2604
PshAI GACNNNNGTC 1 cut(s) 3238
PshBI ATTAAT 2 cut(s) 3297, 3507
PsiI TTATAA 1 cut(s) 3152
Psp124BI GAGCTC 1 cut(s) 2094
Psp1406I AACGTT 3 cut(s) 774, 1030, 3251
Psp6I CCWGG 4 cut(s) 765, 1549, 1558, 2986
PspEI GGTNACC 1 cut(s) 1553
PspFI CCCAGC 2 cut(s) 492, 2651
PspGI CCWGG 4 cut(s) 765, 1549, 1558, 2986
PspN4I GGNNCC 3 cut(s) 369, 1071, 1799
PspPI GGNCC 3 cut(s) 952, 1240, 3464
PsrI GAACNNNNNNTAC 2 cut(s) 68, 100
PstI CTGCAG 1 cut(s) 514
PstNI CAGNNNCTG 1 cut(s) 984
PsuI RGATCY 6 cut(s) 367, 496, 1214, 2476, 2536, 2620
RsaI GTAC 6 cut(s) 599, 637, 921, 1684, 1875, 3501
RsaNI GTAC 6 cut(s) 598, 636, 920, 1683, 1874, 3500
RseI CAYNNNNRTG 3 cut(s) 451, 645, 3372
SacI GAGCTC 1 cut(s) 2094
SapI GCTCTTC 1 cut(s) 420
SatI GCNGC 7 cut(s) 141, 210, 462, 477, 1739, 2571, 2761
Sau3AI GATC 9 cut(s) 252, 367, 496, 882, 943, 1214, 2476, 2536, 2620
Sau96I GGNCC 3 cut(s) 952, 1240, 3464
SchI GAGTC 2 cut(s) 168, 2605
ScrFI CCNGG 6 cut(s) 602, 767, 1551, 1560, 2853, 2988
SduI GDGCHC 3 cut(s) 1644, 2094, 2906
SfaNI GCATC 6 cut(s) 1488, 1591, 1768, 1887, 2070, 3102
SfcI CTRYAG 3 cut(s) 510, 2882, 2942
Sfr274I CTCGAG 1 cut(s) 1979
SfuI TTCGAA 1 cut(s) 2890
SinI GGWCC 2 cut(s) 952, 3464
SlaI CTCGAG 1 cut(s) 1979
SmiMI CAYNNNNRTG 3 cut(s) 451, 645, 3372
SmlI CTYRAG 7 cut(s) 18, 449, 1454, 1901, 1910, 1979, 2194
SmoI CTYRAG 7 cut(s) 18, 449, 1454, 1901, 1910, 1979, 2194
SpeI ACTAGT 1 cut(s) 3170
SphI GCATGC 1 cut(s) 1118
SsiI CCGC 5 cut(s) 140, 223, 477, 551, 2741
SspI AATATT 2 cut(s) 1148, 1407
SspMI CTAG 8 cut(s) 1196, 1658, 1674, 2207, 2609, 2675, 2961, 3171
SstI GAGCTC 1 cut(s) 2094
StyD4I CCNGG 6 cut(s) 600, 765, 1549, 1558, 2851, 2986
StyI CCWWGG 1 cut(s) 232
TaiI ACGT 7 cut(s) 84, 366, 777, 1033, 1775, 3238, 3254
TaqI TCGA 9 cut(s) 239, 263, 612, 907, 1513, 1980, 2801, 2890, 3021
TatI WGTACW 3 cut(s) 1682, 1873, 3499
TauI GCSGC 2 cut(s) 143, 479
TseFI GTSAC 7 cut(s) 980, 1553, 2098, 2677, 3068, 3192, 3404
TseI GCWGC 5 cut(s) 209, 461, 1738, 2570, 2760
Tsp45I GTSAC 7 cut(s) 980, 1553, 2098, 2677, 3068, 3192, 3404
TspDTI ATGAA 9 cut(s) 160, 438, 537, 1041, 1094, 1098, 1718, 2358, 3143
TspGWI ACGGA 3 cut(s) 1901, 3130, 3360
Van91I CCANNNNNTGG 1 cut(s) 1408
Vha464I CTTAAG 1 cut(s) 1901
VneI GTGCAC 1 cut(s) 2902
VpaK11BI GGWCC 2 cut(s) 952, 3464
VspI ATTAAT 2 cut(s) 3297, 3507
XapI RAATTY 9 cut(s) 481, 678, 734, 1290, 1632, 1730, 2153, 2734, 2785
XbaI TCTAGA 1 cut(s) 2608
XceI RCATGY 1 cut(s) 1118
XcmI CCANNNNNNNNNTGG 2 cut(s) 1409, 2322
XhoI CTCGAG 1 cut(s) 1979
XmiI GTMKAC 2 cut(s) 1003, 2599
XmnI GAANNNNTTC 4 cut(s) 613, 825, 1533, 1632
XspI CTAG 8 cut(s) 1196, 1658, 1674, 2207, 2609, 2675, 2961, 3171
Zsp2I ATGCAT 2 cut(s) 1503, 3095
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.