MD02G1040900.v1.1

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
3310677 .. 3314180
3504 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1040900.v1.1.491

Sequence Viewer

Length: 3006 bp
ATGTATCCTACAAAGCCTTCATTGCGTCCACTAATGCTTACGAATTCAATTTTCAGGCGCGAAGCAGAGTTCATTAGAAAAATTGTTGATGAGAATATTTGTAAATGGCTCACCAGCACAAACGAATTACATGTGGCCAATCATCCAGTTGGAATCGATTCTCGCATTCAAGATATCATCACTTATCTTTCAAGTGGTGGATCAAATGATGTTCGCATGGTTGGAATTTGGGGGATGGGTGGAGTGGGTAAAACAACAATTGCCAAAGCCATTTATAACCAAATTCATCCTATGTTCCAATTCAAAAGTTTCCTTGCCGACGTTCGCGATGCTACAAGTAAACATGGTCTGGTTTATTTGCAAGAAAAACTTATTTCTGACATCTTGAAAAAGAAGCTTGAAATAAGCTCTGTTGATGAAGGTATCGGTATGATACAACAATTTCGACATAAAAGGGTACTTGTCATCTTGGACAACATAGACAAAGAAGAACAACTGGATGCAATAGCTGGAAATCATAATTGGTTTGGTCCAGGGAGTAGAATTATCCTAACAACAAGAGATGAACATTTACTAAAGCAAGGGAAAGTGCACAACATATATCCGGCTCAGAAATTCGAGAAAGGAGAAGCTCTGGAGCTCTTTAGTTGGCATGCCTTTGGAAATAGTTGTCCAAACAAAGGATATCTTGAACTCTCAAAAAAGGTTGTTTCTTATTGTGGAGGTTTGCCACTAGCCCTTAAAGTTTTAGGTTCATTTTTGTATGAAAGAACCATGGCAGAGTGGGAAAGTCAATTGGAGAAATTGGAAAGAACTCCAGATGGAAAAATAATAAAACCACTAAGAATAAGCTTTGATGGTCTAGATGATAGACAGAAGGCTATATTCCTTGACATATCTTGTTTCTTTATTCGAATGAACAAGGACTATGTCGCAAAAATATTAGATGGATGTGGATTTTTTGCGACAATAGAAATCAGTGTCCTCCGTGAACGATGCCTTGTAACGGTTGAAGACAATGTGTTGAATATGCATGATTTGCTTCGAGAAATGGCCAGGGTAATCATTTCTGAAAAATCCCCTAATCACCTTGGAAAATGGAGTAGGTTGTGGAACTATCAAGAGGTCGTCGATGTCTTGGAAAATAAATCTGGAACCGAAGAAGTTGAAGGACTTTTTCTACAATCCCCTGATCATTTGTTGAGCTACATGCCTAGTTTCAGTACAGAAGCATTTGCCAATATGAAGAAACTGAAATTGCTTCACTTCAGCGACGCAGAGCTCAAAGGAGAATACAAACATTTTCCCAGAGAATTAATATGGTTGTGCTGGGGAGGGTGCCATTTAAAGTCCATACCAAATGACTTTTTCAATCAAGATAAACTAGTTATTTTAGACATGCAGGGGAGCGAACTGGTACAAGTTTGGGAGGGTTCCAAGTCGCTACATAACTTGAAAACCCTTAATCTCAGCCATTCCTGGTCCTTACAGAAATCACCAGACTTTTCACAAGTCCCAAATCTTGAAGAGTTGATATTGCAAAGTTGTGAGAGGTTGTCCGAGATTCACCCCTCCGTTGGTCATCTTAAAAGACTTTCTTTGGTGAACCTTGAGAGGTGTCTCAATCTTATTTCTCTTCCAGGGGATTTCTACAAGTCGAAATCTGTTGAGACTCTTCTTCTTAGTGGATGTTCAAAATTCGTAGAACTGCATGAGGATATAGGGGAGATGATATCACTGAGAACACTTGTAGCGGATTTCACAGCCATTAGACGAGTACCACCTTCCATAGTAAGATTGAAGAATCTCACTCATTTATATCTCTCATCCTGCAGTTTAGATGATGATGGAATCCTTAAGGATCTTGGGAGTCTAATTTCTTTACAAGCTTTGCACCTTGGATCGAACTATTTTCGTATCCTACCCAGCCTCAGTGGTCTTTCAAAGCTTGAAGCTCTGGAGTTATATAATTGCAAGAAACTTCATACAATATCTGATTTACCAACAAGTTTGAAATTTCTGTATGCGAATGAGTGCCCTGCATTGAAAACAATGCCCAATTTTTCGGAAATGTCAAATATGAGAGAACTGAAAGTAAGGAATTCACACAAACTCACTGAAGTTCCAGGCTTGCACAAGTCATTAAACTCCATGACATGGATTAATATGCGAGGGTGCATCAATCTCACAACTGATTTTAGGAAGAACATCCTACAGGGATGGACTTCTTGCGGATTTGGTGGCATTTTTCTGTACAGGAATTTTGTTCCTGATTGGTTTGAGTTTGTTAACGATGGTAATAGAGTCAGTTTTGATATTCCCCCGAACGATGGCCGTACTTTTGAAGGGTTGACTGTGTGCTGCTTTTGCAACTATGTAGTTGCACAAATTTTTAAATTTGGCATTACTGTTATAAATAATACCAAGCGTACTGAGTTGCACGTTTTCTTTGGCAACCAAATTTGGAATAAGTACTTACTTTGGCAAGGTCAATTATCGAACGATATGCTCGAATTGGAAAGTGGGGATAAAATTGAAGTTATAATATCTAATTATTATGGGCCACCGAAGAGAACAACTTACCATCCAGTGTCATTGAAGAGAACAATGGTTAATCTAGTGTGGAACAAACCTATGAAGGAAAATACGAATGATTTGGACAAAGTTGATTATGGTTTTTACCGACATCCAGCTCGGTTCTACGCGGAGTCATCTGCTGTTGTGTGGGCATCTGATGAAGATGAAGATGAAGAACCATGTACAGATGAAGATGAAGATGAAGAACCAAGTACAGATAAAGATGAAGACGAAGTTGAAGAACCATGCACATATGAAGATGAAGATGGAGATGAAGATGAAGATGAAGATGAAGATGGAGATGGAGATGAAGATGAAGATGGAGATGGAGATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGTTAAAAAGTCAAGGAGTACATCAGGATTCGCATCAGGTGAAGTGATGGAAGAGAGCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1002

Amino Acids

114.36

Weight (kDa)

5.05

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 55 - 222 5.4e-19 NB-ARC domain
WHD_ROQ1 PF23282 291 - 360 2.5e-14 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 566 - 723 5.3e-09 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36930 AT5G36930 AT5G36930 AT5G36930
fragaria_vesca FvH4_3g45361 FvH4_3g45380 FvH4_5g21061 FvH4_5g21062 FvH4_5g21063 FvH4_5g32050 FvH4_5g32970 FvH4_5g32990 FvH4_5g34190 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34211 FvH4_5g34240 FvH4_5g34250
malus_domestica MD00G1011700.v1.1 MD00G1026100.v1.1 MD00G1026500.v1.1 MD00G1027000.v1.1 MD00G1027100.v1.1 MD00G1027700.v1.1 MD00G1027800.v1.1 MD00G1028000.v1.1 MD00G1220000.v1.1 MD02G1024400.v1.1 MD02G1024800.v1.1 MD02G1026000.v1.1 MD02G1026100.v1.1 MD02G1031800.v1.1 MD02G1038500.v1.1 MD02G1038700.v1.1 MD02G1039200.v1.1 MD02G1040600.v1.1 MD02G1040900.v1.1 MD02G1041200.v1.1 MD02G1041300.v1.1 MD02G1041700.v1.1 MD02G1042000.v1.1 MD02G1043800.v1.1 MD02G1043900.v1.1 MD02G1044300.v1.1 MD02G1045200.v1.1 MD02G1045300.v1.1 MD02G1051200.v1.1 MD02G1052200.v1.1 MD02G1052800.v1.1 MD02G1053100.v1.1 MD02G1053600.v1.1 MD02G1055500.v1.1 MD02G1063300.v1.1 MD02G1063400.v1.1 MD02G1063800.v1.1 MD02G1306500.v1.1 MD02G1306600.v1.1 MD02G1306700.v1.1 MD02G1306900.v1.1 MD02G1307200.v1.1 MD04G1011700.v1.1 MD05G1315400.v1.1 MD05G1316000.v1.1 MD05G1316700.v1.1 MD05G1317000.v1.1 MD05G1317300.v1.1 MD05G1317600.v1.1 MD05G1317700.v1.1 MD07G1102800.v1.1 MD07G1238200.v1.1 MD08G1175900.v1.1 MD08G1203600.v1.1 MD09G1024200.v1.1 MD09G1039600.v1.1 MD09G1044800.v1.1 MD09G1045100.v1.1 MD10G1038700.v1.1 MD10G1039000.v1.1 MD10G1039200.v1.1 MD10G1040000.v1.1 MD10G1040200.v1.1 MD10G1040600.v1.1 MD10G1040800.v1.1 MD10G1297300.v1.1 MD12G1247500.v1.1 MD12G1247900.v1.1 MD12G1248300.v1.1 MD12G1248800.v1.1 MD15G1103700.v1.1 MD15G1103800.v1.1 MD15G1104000.v1.1 MD15G1179600.v1.1 MD15G1182500.v1.1 MD16G1068200.v1.1 MD16G1068300.v1.1 MD17G1024600.v1.1 MD17G1024700.v1.1 MD17G1025000.v1.1 MD17G1025900.v1.1
prunus_persica Prupe.1G539800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G557100_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557300_v2.0.a1
pyrus_communis pycom02g02080 pycom02g02090 pycom02g02110 pycom02g03220 pycom02g03260 pycom02g03370 pycom02g03390 pycom02g03410 pycom02g03420 pycom02g03450 pycom02g03500 pycom02g03730 pycom02g03770 pycom02g04400 pycom02g04410 pycom02g04430 pycom02g04450 pycom02g04460 pycom02g04490 pycom02g05200 pycom02g25710 pycom02g25750 pycom02g25790 pycom02g25810 pycom02g25830 pycom04g00920 pycom04g00930 pycom04g00940 pycom05g29300 pycom05g29310 pycom05g29380 pycom05g29410 pycom07g06310 pycom07g21420 pycom08g15070 pycom08g17540 pycom08g17560 pycom08g17570 pycom10g02670 pycom10g02680 pycom10g02700 pycom10g02770 pycom10g02790 pycom10g02800 pycom10g02810 pycom10g25020 pycom10g25030 pycom10g25050 pycom10g25080 pycom111g01990 pycom111g02000 pycom111g02030 pycom111g02040 pycom111g02050 pycom111g02060 pycom12g22710 pycom12g22720 pycom12g22730 pycom12g22740 pycom12g22750 pycom12g22770 pycom12g22780 pycom12g22790 pycom12g22800 pycom12g22810 pycom12g22830 pycom12g22840 pycom12g22860 pycom15g09440 pycom15g09480 pycom15g16120 pycom15g32380 pycom16g05970 pycom17g02100
rosa_chinensis RchiOBHm_Chr2g0144661 RchiOBHm_Chr4g0407491 RchiOBHm_Chr4g0407501 RchiOBHm_Chr4g0412381 RchiOBHm_Chr7g0208191 RchiOBHm_Chr7g0208201 RchiOBHm_Chr7g0208211 RchiOBHm_Chr7g0208221 RchiOBHm_Chr7g0228071 RchiOBHm_Chr7g0228121 RchiOBHm_Chr7g0230971 RchiOBHm_Chr7g0230981 RchiOBHm_Chr7g0233901 RchiOBHm_Chr7g0233951 RchiOBHm_Chr7g0233961 RchiOBHm_Chr7g0233991 RchiOBHm_Chr7g0234021 RchiOBHm_Chr7g0234151 RchiOBHm_Chr7g0234161 RchiOBHm_Chr7g0234241 RchiOBHm_Chr7g0234501 RchiOBHm_Chr7g0234641 RchiOBHm_Chr7g0234771 RchiOBHm_Chr7g0234781 RchiOBHm_Chr7g0234991 RchiOBHm_Chr7g0241291 RchiOBHm_Chr7g0241301
rosa_laevigata RLG00000001186 RLG00000001187 RLG00000001212 RLG00000001226 RLG00000001233 RLG00000001590 RLG00000003242 RLG00000003243 RLG00000003249 RLG00000008688 RLG00000008690
rosa_multiflora Rmu_co7966574.1_g000001 Rmu_co8120830.1_g000001 Rmu_co8142226.1_g000001 Rmu_co8293083.1_g000001 Rmu_co8351227.1_g000001 Rmu_co8380159.1_g000001 Rmu_co8456505.1_g000001 Rmu_sc0000676.1_g000025 Rmu_sc0000706.1_g000018 Rmu_sc0000706.1_g000040 Rmu_sc0000740.1_g000029 Rmu_sc0000740.1_g000032 Rmu_sc0000740.1_g000037 Rmu_sc0000740.1_g000040 Rmu_sc0000762.1_g000003 Rmu_sc0000762.1_g000019 Rmu_sc0000762.1_g000034 Rmu_sc0000762.1_g000069 Rmu_sc0000892.1_g000001 Rmu_sc0000945.1_g000040 Rmu_sc0001913.1_g000037 Rmu_sc0001913.1_g000041 Rmu_sc0001913.1_g000049 Rmu_sc0002775.1_g000017 Rmu_sc0002775.1_g000018 Rmu_sc0002775.1_g000020 Rmu_sc0002775.1_g000021 Rmu_sc0002775.1_g000022 Rmu_sc0002775.1_g000025 Rmu_sc0002775.1_g000026 Rmu_sc0002775.1_g000028 Rmu_sc0002775.1_g000030 Rmu_sc0004858.1_g000002 Rmu_sc0004864.1_g000022 Rmu_sc0005038.1_g000023 Rmu_sc0005840.1_g000014 Rmu_sc0006724.1_g000003 Rmu_sc0006824.1_g000005 Rmu_sc0007869.1_g000003 Rmu_sc0007869.1_g000005 Rmu_sc0007869.1_g000008 Rmu_sc0008646.1_g000007 Rmu_sc0009637.1_g000009 Rmu_sc0010500.1_g000002 Rmu_sc0010500.1_g000012 Rmu_sc0012403.1_g000025 Rmu_sc0013768.1_g000025 Rmu_sc0015625.1_g000001 Rmu_sc0019715.1_g000001 Rmu_sc0021133.1_g000002 Rmu_sc0021904.1_g000001 Rmu_sc0021904.1_g000003 Rmu_sc0021904.1_g000004 Rmu_sc0022054.1_g000001 Rmu_sc0026025.1_g000001 Rmu_sc0036828.1_g000002 Rmu_sc0041808.1_g000001 Rmu_ssc0000012.1_g000001
rosa_roxburghii Rroxscaffold_3G00226370 Rroxscaffold_3G00226860 Rroxscaffold_3G00226900 Rroxscaffold_3G00226930 Rroxscaffold_3G00226940 Rroxscaffold_3G00226970 Rroxscaffold_3G00226980 Rroxscaffold_3G00231530 Rroxscaffold_3G00237090 Rroxscaffold_3G00250760 Rroxscaffold_3G00250800
rosa_rugosa Rorug04G0082300 Rorug07G0101800 Rorug07G0102000 Rorug07G0102100 Rorug07G0221200 Rorug07G0245700 Rorug07G0245700 Rorug07G0245700 Rorug07G0263900 Rorug07G0264000 Rorug07G0264000 Rorug07G0264500 Rorug07G0282900 Rorug07G0282900 Rorug07G0283100 Rorug07G0283200.1 Rorug07G0283300 Rorug07G0283900 Rorug07G0284000 Rorug07G0284100 Rorug07G0284300 Rorug07G0284400 Rorug07G0284500 Rorug07G0285000 Rorug07G0285200 Rorug07G0285300 Rorug07G0285500 Rorug07G0286800 Rorug07G0286900 Rorug07G0287100 Rorug07G0287200
rosa_samantha Rh7AG236100 Rh7AG236200 Rh7AG236300 Rh7AG440000 Rh7AG440100 Rh7BG411900 Rh7BG412000 Rh7BG412600 Rh7CG251300 Rh7CG417700 Rh7CG460100 Rh7DG242100 Rh7DG242200 Rh7DG242300 Rh7DG429300
rosa_wichuraiana Rw0G005070 Rw0G010780 Rw0G012530 Rw7G020110 Rw7G020160 Rw7G020170 Rw7G033210 Rw7G033230 Rw7G033250 Rw7G034540 Rw7G035150 Rw7G036190 Rw7G036210 Rw7G036260 Rw7G036270 Rw7G036290 Rw7G036300 Rw7G036310 Rw7G036350 Rw7G036360 Rw7G036440 Rw7G036510 Rw7G036530 Rw7G036570 Rw7G036590 Rw7G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 276, 2414, 2543
AccB1I GGYRCC 1 cut(s) 1338
AccB7I CCANNNNNTGG 1 cut(s) 2157
AccII CGCG 3 cut(s) 60, 327, 2705
AciI CCGC 3 cut(s) 1754, 2232, 2705
AclWI GGATC 3 cut(s) 208, 1869, 1909
AcoI YGGCCR 3 cut(s) 135, 1053, 2332
AcuI CTGAAG 2 cut(s) 1252, 2139
AfiI CCNNNNNNNGG 5 cut(s) 680, 1006, 1577, 2157, 2330
AflII CTTAAG 1 cut(s) 1856
AflIII ACRYGT 1 cut(s) 130
AhlI ACTAGT 1 cut(s) 1384
AjnI CCWGG 5 cut(s) 532, 1055, 1478, 1639, 2125
AjuI GAANNNNNNNTTGG 2 cut(s) 505, 537
Alw21I GWGCWC 3 cut(s) 594, 642, 1284
Alw26I GTCTC 2 cut(s) 1625, 1664
Alw44I GTGCAC 1 cut(s) 590
AlwI GGATC 3 cut(s) 208, 1869, 1909
AoxI GGCC 4 cut(s) 135, 1053, 2332, 2561
ApaLI GTGCAC 1 cut(s) 590
ApeKI GCWGC 1 cut(s) 2361
AseI ATTAAT 2 cut(s) 1316, 2163
Asp700I GAANNNNTTC 1 cut(s) 157
AspLEI GCGC 1 cut(s) 60
AspS9I GGNCC 3 cut(s) 530, 1482, 2561
AsuHPI GGTGA 6 cut(s) 103, 1079, 1488, 1559, 1615, 2993
AsuII TTCGAA 1 cut(s) 913
AvaII GGWCC 2 cut(s) 530, 1482
BaeGI GKGCMC 2 cut(s) 594, 2039
BalI TGGCCA 2 cut(s) 137, 1055
BanI GGYRCC 1 cut(s) 1338
BanII GRGCYC 2 cut(s) 642, 1284
BbsI GAAGAC 2 cut(s) 1020, 2811
Bbv12I GWGCWC 3 cut(s) 594, 642, 1284
BbvI GCAGC 1 cut(s) 2348
BceAI ACGGC 1 cut(s) 2319
BcgI CGANNNNNNTGC 2 cut(s) 2488, 2522
BciT130I CCWGG 5 cut(s) 534, 1057, 1480, 1641, 2127
BciVI GTATCC 2 cut(s) 15, 1928
BclI TGATCA 1 cut(s) 1192
BcoDI GTCTC 2 cut(s) 1625, 1664
BcuI ACTAGT 1 cut(s) 1384
BfaI CTAG 5 cut(s) 734, 863, 1215, 1385, 2618
BfmI CTRYAG 2 cut(s) 1831, 2213
BfrI CTTAAG 1 cut(s) 1856
BfuI GTATCC 2 cut(s) 15, 1928
BisI GCNGC 1 cut(s) 2362
BlsI GCNGC 1 cut(s) 2363
BmcAI AGTACT 1 cut(s) 2474
Bme1390I CCNGG 5 cut(s) 534, 1057, 1480, 1641, 2127
Bme18I GGWCC 2 cut(s) 530, 1482
BmgT120I GGNCC 3 cut(s) 530, 1482, 2561
BmiI GGNNCC 3 cut(s) 1156, 1340, 1435
BmrFI CCNGG 5 cut(s) 534, 1057, 1480, 1641, 2127
BmsI GCATC 6 cut(s) 319, 490, 986, 2187, 2738, 2984
BpiI GAAGAC 2 cut(s) 1020, 2811
BpmI CTGGAG 3 cut(s) 656, 801, 1979
Bpu14I TTCGAA 1 cut(s) 913
BpuEI CTTGAG 1 cut(s) 1631
Bsa29I ATCGAT 1 cut(s) 156
BsaBI GATNNNNATC 1 cut(s) 2974
BsaJI CCNNGG 6 cut(s) 533, 774, 1056, 1090, 1640, 1897
Bsc4I CCNNNNNNNGG 5 cut(s) 680, 1006, 1577, 2157, 2330
Bse1I ACTGG 4 cut(s) 146, 501, 1419, 2588
Bse3DI GCAATG 1 cut(s) 20
Bse8I GATNNNNATC 1 cut(s) 2974
BseBI CCWGG 5 cut(s) 534, 1057, 1480, 1641, 2127
BseCI ATCGAT 1 cut(s) 156
BseDI CCNNGG 6 cut(s) 533, 774, 1056, 1090, 1640, 1897
BseJI GATNNNNATC 1 cut(s) 2974
BseLI CCNNNNNNNGG 5 cut(s) 680, 1006, 1577, 2157, 2330
BseMI GCAATG 1 cut(s) 20
BseMII CTCAG 5 cut(s) 623, 1483, 1730, 1945, 2424
BseNI ACTGG 4 cut(s) 146, 501, 1419, 2588
BseSI GKGCMC 2 cut(s) 594, 2039
BseXI GCAGC 1 cut(s) 2348
BseYI CCCAGC 2 cut(s) 1329, 1925
Bsh1236I CGCG 3 cut(s) 60, 327, 2705
BshFI GGCC 4 cut(s) 137, 1055, 2334, 2563
BshNI GGYRCC 1 cut(s) 1338
BshVI ATCGAT 1 cut(s) 156
BsiHKAI GWGCWC 3 cut(s) 594, 642, 1284
BsiSI CCGG 1 cut(s) 605
BslFI GGGAC 1 cut(s) 1499
BslI CCNNNNNNNGG 5 cut(s) 680, 1006, 1577, 2157, 2330
BsmAI GTCTC 2 cut(s) 1625, 1664
BsmFI GGGAC 1 cut(s) 1499
BsmI GAATGC 1 cut(s) 165
BsnI GGCC 4 cut(s) 137, 1055, 2334, 2563
Bsp119I TTCGAA 1 cut(s) 913
Bsp1286I GDGCHC 4 cut(s) 594, 642, 1284, 2039
Bsp1407I TGTACA 2 cut(s) 2253, 2759
Bsp143I GATC 4 cut(s) 200, 1192, 1861, 1901
Bsp19I CCATGG 1 cut(s) 774
Bsp68I TCGCGA 1 cut(s) 327
BspACI CCGC 3 cut(s) 1754, 2232, 2705
BspANI GGCC 4 cut(s) 137, 1055, 2334, 2563
BspCNI CTCAG 5 cut(s) 622, 1482, 1731, 1944, 2425
BspDI ATCGAT 1 cut(s) 156
BspFNI CGCG 3 cut(s) 60, 327, 2705
BspLI GGNNCC 3 cut(s) 1156, 1340, 1435
BspMAI CTGCAG 1 cut(s) 1835
BspPI GGATC 3 cut(s) 208, 1869, 1909
BspT104I TTCGAA 1 cut(s) 913
BspT107I GGYRCC 1 cut(s) 1338
BspTI CTTAAG 1 cut(s) 1856
BsrDI GCAATG 1 cut(s) 20
BsrGI TGTACA 2 cut(s) 2253, 2759
BsrI ACTGG 4 cut(s) 146, 501, 1419, 2588
BssECI CCNNGG 6 cut(s) 533, 774, 1056, 1090, 1640, 1897
BssMI GATC 4 cut(s) 200, 1192, 1861, 1901
BssT1I CCWWGG 3 cut(s) 774, 1090, 1897
Bst2UI CCWGG 5 cut(s) 534, 1057, 1480, 1641, 2127
Bst4CI ACNGT 3 cut(s) 1009, 2356, 2410
Bst6I CTCTTC 6 cut(s) 1521, 1641, 1680, 2564, 2594, 2988
BstAFI CTTAAG 1 cut(s) 1856
BstAPI GCANNNNNTGC 1 cut(s) 1039
BstAUI TGTACA 2 cut(s) 2253, 2759
BstBI TTCGAA 1 cut(s) 913
BstC8I GCNNGC 2 cut(s) 654, 2132
BstDEI CTNAG 7 cut(s) 609, 842, 1469, 1682, 1739, 1931, 2433
BstDSI CCRYGG 1 cut(s) 774
BstFNI CGCG 3 cut(s) 60, 327, 2705
BstHHI GCGC 1 cut(s) 60
BstKTI GATC 4 cut(s) 203, 1195, 1864, 1904
BstMAI GTCTC 2 cut(s) 1625, 1664
BstMBI GATC 4 cut(s) 200, 1192, 1861, 1901
BstMWI GCNNNNNNNGC 3 cut(s) 22, 1039, 2367
BstNI CCWGG 5 cut(s) 534, 1057, 1480, 1641, 2127
BstNSI RCATGY 4 cut(s) 134, 656, 1213, 1402
BstSCI CCNGG 5 cut(s) 532, 1055, 1478, 1639, 2125
BstSFI CTRYAG 2 cut(s) 1831, 2213
BstSLI GKGCMC 2 cut(s) 594, 2039
BstUI CGCG 3 cut(s) 60, 327, 2705
BstV1I GCAGC 1 cut(s) 2348
BstV2I GAAGAC 2 cut(s) 1020, 2811
BstX2I RGATCY 1 cut(s) 1861
BstYI RGATCY 1 cut(s) 1861
Bsu15I ATCGAT 1 cut(s) 156
BsuI GTATCC 2 cut(s) 15, 1928
BsuRI GGCC 4 cut(s) 137, 1055, 2334, 2563
BsuTUI ATCGAT 1 cut(s) 156
BtgI CCRYGG 1 cut(s) 774
BtgZI GCGATG 1 cut(s) 342
BtsIMutI CAGTG 5 cut(s) 985, 1736, 1939, 2115, 2595
BtuMI TCGCGA 1 cut(s) 327
Cac8I GCNNGC 2 cut(s) 654, 2132
CfoI GCGC 1 cut(s) 60
Cfr13I GGNCC 3 cut(s) 530, 1482, 2561
ClaI ATCGAT 1 cut(s) 156
CseI GACGC 2 cut(s) 14, 1283
DdeI CTNAG 7 cut(s) 609, 842, 1469, 1682, 1739, 1931, 2433
DpnI GATC 4 cut(s) 202, 1194, 1863, 1903
DpnII GATC 4 cut(s) 200, 1192, 1861, 1901
DraI TTTAAA 2 cut(s) 1347, 2395
EaeI YGGCCR 3 cut(s) 135, 1053, 2332
Eam1104I CTCTTC 6 cut(s) 1521, 1641, 1680, 2564, 2594, 2988
EarI CTCTTC 6 cut(s) 1521, 1641, 1680, 2564, 2594, 2988
Ecl136II GAGCTC 2 cut(s) 640, 1282
Eco130I CCWWGG 3 cut(s) 774, 1090, 1897
Eco24I GRGCYC 2 cut(s) 642, 1284
Eco32I GATATC 3 cut(s) 175, 686, 1734
Eco47I GGWCC 2 cut(s) 530, 1482
Eco53kI GAGCTC 2 cut(s) 640, 1282
Eco57I CTGAAG 2 cut(s) 1252, 2139
EcoICRI GAGCTC 2 cut(s) 640, 1282
EcoRI GAATTC 2 cut(s) 43, 2101
EcoRII CCWGG 5 cut(s) 532, 1055, 1478, 1639, 2125
EcoRV GATATC 3 cut(s) 175, 686, 1734
EcoT14I CCWWGG 3 cut(s) 774, 1090, 1897
EcoT22I ATGCAT 1 cut(s) 1035
EcoT38I GRGCYC 2 cut(s) 642, 1284
ErhI CCWWGG 3 cut(s) 774, 1090, 1897
FalI AAGNNNNNCTT 6 cut(s) 354, 386, 672, 704, 1582, 1614
FaqI GGGAC 1 cut(s) 1499
FauNDI CATATG 1 cut(s) 2830
FbaI TGATCA 1 cut(s) 1192
Fnu4HI GCNGC 1 cut(s) 2362
FriOI GRGCYC 2 cut(s) 642, 1284
Fsp4HI GCNGC 1 cut(s) 2362
FspBI CTAG 5 cut(s) 734, 863, 1215, 1385, 2618
GlaI GCGC 1 cut(s) 59
GluI GCNGC 1 cut(s) 2362
GsaI CCCAGC 2 cut(s) 1333, 1929
GsuI CTGGAG 3 cut(s) 656, 801, 1979
HaeIII GGCC 4 cut(s) 137, 1055, 2334, 2563
HapII CCGG 1 cut(s) 605
HgaI GACGC 2 cut(s) 14, 1283
HhaI GCGC 1 cut(s) 60
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HincII GTYRAC 2 cut(s) 2290, 2352
HindII GTYRAC 2 cut(s) 2290, 2352
HindIII AAGCTT 4 cut(s) 395, 850, 1887, 1946
HpaI GTTAAC 1 cut(s) 2290
HpaII CCGG 1 cut(s) 605
HphI GGTGA 6 cut(s) 103, 1079, 1488, 1559, 1615, 2993
Hpy166II GTNNAC 7 cut(s) 29, 341, 592, 992, 1606, 2290, 2352
Hpy188I TCNGA 7 cut(s) 379, 612, 1072, 1561, 1996, 2068, 2734
Hpy8I GTNNAC 7 cut(s) 29, 341, 592, 992, 1606, 2290, 2352
Hpy99I CGWCG 3 cut(s) 323, 1133, 1277
HpyAV CCTTC 7 cut(s) 27, 413, 871, 1163, 1794, 2339, 2632
HpyCH4III ACNGT 3 cut(s) 1009, 2356, 2410
HpyCH4IV ACGT 2 cut(s) 321, 2442
HpyF10VI GCNNNNNNNGC 3 cut(s) 22, 1039, 2367
HpyF3I CTNAG 7 cut(s) 609, 842, 1469, 1682, 1739, 1931, 2433
HpySE526I ACGT 2 cut(s) 321, 2442
HspAI GCGC 1 cut(s) 58
Ksp22I TGATCA 1 cut(s) 1192
KspAI GTTAAC 1 cut(s) 2290
Kzo9I GATC 4 cut(s) 200, 1192, 1861, 1901
LmnI GCTCC 2 cut(s) 637, 1407
Lsp1109I GCAGC 1 cut(s) 2348
LweI GCATC 6 cut(s) 319, 490, 986, 2187, 2738, 2984
MaeI CTAG 5 cut(s) 734, 863, 1215, 1385, 2618
MaeII ACGT 2 cut(s) 321, 2442
MaeIII GTNAC 1 cut(s) 1003
MalI GATC 4 cut(s) 202, 1194, 1863, 1903
MboI GATC 4 cut(s) 200, 1192, 1861, 1901
MfeI CAATTG 2 cut(s) 258, 794
MflI RGATCY 1 cut(s) 1861
MhlI GDGCHC 4 cut(s) 594, 642, 1284, 2039
MlsI TGGCCA 2 cut(s) 137, 1055
MluNI TGGCCA 2 cut(s) 137, 1055
MlyI GAGTC 4 cut(s) 1666, 1879, 2313, 2717
MmeI TCCRAC 2 cut(s) 130, 202
Mox20I TGGCCA 2 cut(s) 137, 1055
Mph1103I ATGCAT 1 cut(s) 1035
MroXI GAANNNNTTC 1 cut(s) 157
MscI TGGCCA 2 cut(s) 137, 1055
Msp20I TGGCCA 2 cut(s) 137, 1055
MspCI CTTAAG 1 cut(s) 1856
MspI CCGG 1 cut(s) 605
MspR9I CCNGG 5 cut(s) 534, 1057, 1480, 1641, 2127
MunI CAATTG 2 cut(s) 258, 794
Mva1269I GAATGC 1 cut(s) 165
MvaI CCWGG 5 cut(s) 534, 1057, 1480, 1641, 2127
MvnI CGCG 3 cut(s) 60, 327, 2705
MwoI GCNNNNNNNGC 3 cut(s) 22, 1039, 2367
NcoI CCATGG 1 cut(s) 774
NdeI CATATG 1 cut(s) 2830
NdeII GATC 4 cut(s) 200, 1192, 1861, 1901
NlaIV GGNNCC 3 cut(s) 1156, 1340, 1435
NruI TCGCGA 1 cut(s) 327
NsiI ATGCAT 1 cut(s) 1035
NspI RCATGY 4 cut(s) 134, 656, 1213, 1402
NspV TTCGAA 1 cut(s) 913
PaeI GCATGC 1 cut(s) 656
PciI ACATGT 1 cut(s) 130
PcsI WCGNNNNNNNCGW 1 cut(s) 2508
PctI GAATGC 1 cut(s) 165
PdmI GAANNNNTTC 1 cut(s) 157
PfeI GAWTC 6 cut(s) 153, 158, 1564, 1804, 1851, 2970
PflFI GACNNNGTC 1 cut(s) 929
PflMI CCANNNNNTGG 1 cut(s) 2157
PkrI GCNGC 1 cut(s) 2363
PleI GAGTC 4 cut(s) 1666, 1878, 2312, 2716
PpsI GAGTC 4 cut(s) 1666, 1878, 2312, 2716
PscI ACATGT 1 cut(s) 130
PshBI ATTAAT 2 cut(s) 1316, 2163
PsiI TTATAA 3 cut(s) 276, 2414, 2543
Psp124BI GAGCTC 2 cut(s) 642, 1284
Psp6I CCWGG 5 cut(s) 532, 1055, 1478, 1639, 2125
PspFI CCCAGC 2 cut(s) 1329, 1925
PspGI CCWGG 5 cut(s) 532, 1055, 1478, 1639, 2125
PspN4I GGNNCC 3 cut(s) 1156, 1340, 1435
PspPI GGNCC 3 cut(s) 530, 1482, 2561
PstI CTGCAG 1 cut(s) 1835
PsuI RGATCY 1 cut(s) 1861
PsyI GACNNNGTC 1 cut(s) 929
RruI TCGCGA 1 cut(s) 327
SacI GAGCTC 2 cut(s) 642, 1284
SatI GCNGC 1 cut(s) 2362
Sau3AI GATC 4 cut(s) 200, 1192, 1861, 1901
Sau96I GGNCC 3 cut(s) 530, 1482, 2561
ScaI AGTACT 1 cut(s) 2474
SchI GAGTC 4 cut(s) 1666, 1879, 2313, 2717
ScrFI CCNGG 5 cut(s) 534, 1057, 1480, 1641, 2127
SduI GDGCHC 4 cut(s) 594, 642, 1284, 2039
SfaNI GCATC 6 cut(s) 319, 490, 986, 2187, 2738, 2984
SfcI CTRYAG 2 cut(s) 1831, 2213
SfuI TTCGAA 1 cut(s) 913
SinI GGWCC 2 cut(s) 530, 1482
SmlI CTYRAG 2 cut(s) 1610, 1856
SmoI CTYRAG 2 cut(s) 1610, 1856
SpeI ACTAGT 1 cut(s) 1384
SphI GCATGC 1 cut(s) 656
SsiI CCGC 3 cut(s) 1754, 2232, 2705
SspI AATATT 2 cut(s) 97, 942
SspMI CTAG 5 cut(s) 734, 863, 1215, 1385, 2618
SstI GAGCTC 2 cut(s) 642, 1284
StyD4I CCNGG 5 cut(s) 532, 1055, 1478, 1639, 2125
StyI CCWWGG 3 cut(s) 774, 1090, 1897
TaaI ACNGT 3 cut(s) 1009, 2356, 2410
TaiI ACGT 2 cut(s) 324, 2445
TatI WGTACW 6 cut(s) 1223, 2253, 2472, 2759, 2789, 2960
TfiI GAWTC 6 cut(s) 153, 158, 1564, 1804, 1851, 2970
TscAI CASTG 5 cut(s) 985, 1743, 1939, 2122, 2595
TseI GCWGC 1 cut(s) 2361
TspGWI ACGGA 2 cut(s) 977, 1564
TspRI CASTG 5 cut(s) 985, 1743, 1939, 2122, 2595
Tth111I GACNNNGTC 1 cut(s) 929
Van91I CCANNNNNTGG 1 cut(s) 2157
Vha464I CTTAAG 1 cut(s) 1856
VneI GTGCAC 1 cut(s) 590
VpaK11BI GGWCC 2 cut(s) 530, 1482
VspI ATTAAT 2 cut(s) 1316, 2163
XbaI TCTAGA 1 cut(s) 862
XceI RCATGY 4 cut(s) 134, 656, 1213, 1402
XmnI GAANNNNTTC 1 cut(s) 157
XspI CTAG 5 cut(s) 734, 863, 1215, 1385, 2618
ZrmI AGTACT 1 cut(s) 2474
Zsp2I ATGCAT 1 cut(s) 1035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.