TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 8 - 56 | 9.2e-11 | Disease resistance protein Roq1-like, winged-helix domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1367 |
| AccB1I | GGYRCC | 2 cut(s) | 81, 1906 |
| AccBSI | CCGCTC | 1 cut(s) | 1182 |
| AccI | GTMKAC | 1 cut(s) | 105 |
| AccII | CGCG | 2 cut(s) | 222, 1806 |
| AccIII | TCCGGA | 1 cut(s) | 1849 |
| AciI | CCGC | 6 cut(s) | 39, 157, 334, 1182, 1811, 2141 |
| AclWI | GGATC | 3 cut(s) | 210, 852, 1834 |
| AcsI | RAATTY | 7 cut(s) | 60, 377, 628, 676, 1009, 1256, 1337 |
| AcuI | CTGAAG | 2 cut(s) | 33, 306 |
| AcyI | GRCGYC | 1 cut(s) | 1907 |
| AfaI | GTAC | 1 cut(s) | 519 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1477, 1693 |
| AflIII | ACRYGT | 1 cut(s) | 220 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1597 |
| AhlI | ACTAGT | 1 cut(s) | 262 |
| AjnI | CCWGG | 3 cut(s) | 69, 1075, 1894 |
| AluBI | AGCT | 8 cut(s) | 361, 372, 490, 839, 1063, 1098, 1424, 1749 |
| AluI | AGCT | 8 cut(s) | 361, 372, 490, 839, 1063, 1098, 1424, 1749 |
| Alw21I | GWGCWC | 1 cut(s) | 1130 |
| Alw26I | GTCTC | 4 cut(s) | 1336, 1605, 1763, 1865 |
| Alw44I | GTGCAC | 1 cut(s) | 1126 |
| AlwI | GGATC | 3 cut(s) | 210, 852, 1834 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 331, 814 |
| Aor13HI | TCCGGA | 1 cut(s) | 1849 |
| AoxI | GGCC | 2 cut(s) | 691, 1279 |
| ApaLI | GTGCAC | 1 cut(s) | 1126 |
| ApeKI | GCWGC | 5 cut(s) | 1098, 1424, 1863, 2059, 2077 |
| ApoI | RAATTY | 7 cut(s) | 60, 377, 628, 676, 1009, 1256, 1337 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 381, 1110 |
| AspLEI | GCGC | 4 cut(s) | 1383, 1453, 1808, 1909 |
| AspS9I | GGNCC | 6 cut(s) | 604, 928, 1517, 1736, 2021, 2168 |
| AsuHPI | GGTGA | 5 cut(s) | 564, 696, 1355, 1499, 1546 |
| AsuNHI | GCTAGC | 1 cut(s) | 1447 |
| AvaII | GGWCC | 6 cut(s) | 604, 928, 1517, 1736, 2021, 2168 |
| AxyI | CCTNAGG | 2 cut(s) | 513, 807 |
| BaeGI | GKGCMC | 1 cut(s) | 1130 |
| BanI | GGYRCC | 2 cut(s) | 81, 1906 |
| BbsI | GAAGAC | 3 cut(s) | 294, 750, 1626 |
| Bbv12I | GWGCWC | 1 cut(s) | 1130 |
| BbvCI | CCTCAGC | 1 cut(s) | 881 |
| BbvI | GCAGC | 5 cut(s) | 1085, 1411, 1850, 2046, 2089 |
| BccI | CCATC | 7 cut(s) | 26, 683, 715, 1064, 1164, 1817, 1978 |
| BceAI | ACGGC | 2 cut(s) | 1266, 1728 |
| BciT130I | CCWGG | 3 cut(s) | 71, 1077, 1896 |
| BcoDI | GTCTC | 4 cut(s) | 1336, 1605, 1763, 1865 |
| BcuI | ACTAGT | 1 cut(s) | 262 |
| BfaI | CTAG | 8 cut(s) | 86, 263, 269, 461, 539, 686, 1448, 1740 |
| BfmI | CTRYAG | 2 cut(s) | 1875, 2060 |
| BfoI | RGCGCY | 1 cut(s) | 1910 |
| BglII | AGATCT | 2 cut(s) | 271, 541 |
| BisI | GCNGC | 6 cut(s) | 40, 1099, 1425, 1864, 2060, 2078 |
| BlsI | GCNGC | 6 cut(s) | 41, 1100, 1426, 1865, 2061, 2079 |
| Bme1390I | CCNGG | 3 cut(s) | 71, 1077, 1896 |
| Bme18I | GGWCC | 6 cut(s) | 604, 928, 1517, 1736, 2021, 2168 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1597 |
| BmgT120I | GGNCC | 6 cut(s) | 604, 928, 1517, 1736, 2021, 2168 |
| BmiI | GGNNCC | 5 cut(s) | 83, 1074, 1518, 1793, 1908 |
| BmrFI | CCNGG | 3 cut(s) | 71, 1077, 1896 |
| BmrI | ACTGGG | 2 cut(s) | 273, 1603 |
| BmsI | GCATC | 4 cut(s) | 787, 954, 1051, 1906 |
| BmtI | GCTAGC | 1 cut(s) | 1451 |
| BmuI | ACTGGG | 2 cut(s) | 273, 1603 |
| BpiI | GAAGAC | 3 cut(s) | 294, 750, 1626 |
| BpmI | CTGGAG | 1 cut(s) | 92 |
| Bpu10I | CCTNAGC | 2 cut(s) | 881, 1521 |
| BpuEI | CTTGAG | 3 cut(s) | 476, 542, 620 |
| BsaBI | GATNNNNATC | 1 cut(s) | 235 |
| BsaHI | GRCGYC | 1 cut(s) | 1907 |
| BsaJI | CCNNGG | 2 cut(s) | 1512, 2164 |
| BsaWI | WCCGGW | 1 cut(s) | 1849 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1951, 1981 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1477, 1693 |
| Bse1I | ACTGG | 5 cut(s) | 279, 370, 1229, 1598, 1910 |
| Bse21I | CCTNAGG | 2 cut(s) | 513, 807 |
| Bse3DI | GCAATG | 2 cut(s) | 1417, 1873 |
| Bse8I | GATNNNNATC | 1 cut(s) | 235 |
| BseAI | TCCGGA | 1 cut(s) | 1849 |
| BseBI | CCWGG | 3 cut(s) | 71, 1077, 1896 |
| BseDI | CCNNGG | 2 cut(s) | 1512, 2164 |
| BseGI | GGATG | 4 cut(s) | 37, 164, 707, 1175 |
| BseJI | GATNNNNATC | 1 cut(s) | 235 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1477, 1693 |
| BseMI | GCAATG | 2 cut(s) | 1417, 1873 |
| BseNI | ACTGG | 5 cut(s) | 279, 370, 1229, 1598, 1910 |
| BseRI | GAGGAG | 1 cut(s) | 24 |
| BseSI | GKGCMC | 1 cut(s) | 1130 |
| BseXI | GCAGC | 5 cut(s) | 1085, 1411, 1850, 2046, 2089 |
| BseYI | CCCAGC | 1 cut(s) | 1377 |
| BsgI | GTGCAG | 2 cut(s) | 970, 2020 |
| Bsh1236I | CGCG | 2 cut(s) | 222, 1806 |
| BshFI | GGCC | 2 cut(s) | 693, 1281 |
| BshNI | GGYRCC | 2 cut(s) | 81, 1906 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1130 |
| BsiSI | CCGG | 1 cut(s) | 1850 |
| BslFI | GGGAC | 4 cut(s) | 149, 1530, 1909, 1973 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1477, 1693 |
| BsmAI | GTCTC | 4 cut(s) | 1336, 1605, 1763, 1865 |
| BsmFI | GGGAC | 4 cut(s) | 149, 1530, 1909, 1973 |
| BsmI | GAATGC | 2 cut(s) | 550, 1008 |
| BsnI | GGCC | 2 cut(s) | 693, 1281 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1130 |
| Bsp13I | TCCGGA | 1 cut(s) | 1849 |
| Bsp143I | GATC | 5 cut(s) | 202, 271, 541, 844, 1826 |
| BspACI | CCGC | 6 cut(s) | 39, 157, 334, 1182, 1811, 2141 |
| BspANI | GGCC | 2 cut(s) | 693, 1281 |
| BspEI | TCCGGA | 1 cut(s) | 1849 |
| BspFNI | CGCG | 2 cut(s) | 222, 1806 |
| BspLI | GGNNCC | 5 cut(s) | 83, 1074, 1518, 1793, 1908 |
| BspMAI | CTGCAG | 1 cut(s) | 2064 |
| BspOI | GCTAGC | 1 cut(s) | 1451 |
| BspPI | GGATC | 3 cut(s) | 210, 852, 1834 |
| BspT107I | GGYRCC | 2 cut(s) | 81, 1906 |
| BsrBI | CCGCTC | 1 cut(s) | 1182 |
| BsrDI | GCAATG | 2 cut(s) | 1417, 1873 |
| BsrI | ACTGG | 5 cut(s) | 279, 370, 1229, 1598, 1910 |
| BssECI | CCNNGG | 2 cut(s) | 1512, 2164 |
| BssMI | GATC | 5 cut(s) | 202, 271, 541, 844, 1826 |
| BssNI | GRCGYC | 1 cut(s) | 1907 |
| BssT1I | CCWWGG | 2 cut(s) | 1512, 2164 |
| Bst2UI | CCWGG | 3 cut(s) | 71, 1077, 1896 |
| Bst4CI | ACNGT | 3 cut(s) | 623, 1303, 2133 |
| BstACI | GRCGYC | 1 cut(s) | 1907 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 331, 2086 |
| BstC8I | GCNNGC | 5 cut(s) | 159, 410, 488, 1449, 2064 |
| BstF5I | GGATG | 4 cut(s) | 37, 164, 707, 1175 |
| BstFNI | CGCG | 2 cut(s) | 222, 1806 |
| BstH2I | RGCGCY | 1 cut(s) | 1910 |
| BstHHI | GCGC | 4 cut(s) | 1383, 1453, 1808, 1909 |
| BstKTI | GATC | 5 cut(s) | 205, 274, 544, 847, 1829 |
| BstMAI | GTCTC | 4 cut(s) | 1336, 1605, 1763, 1865 |
| BstMBI | GATC | 5 cut(s) | 202, 271, 541, 844, 1826 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 331, 409, 1499, 1841, 2086 |
| BstNI | CCWGG | 3 cut(s) | 71, 1077, 1896 |
| BstNSI | RCATGY | 4 cut(s) | 478, 1457, 1506, 1979 |
| BstSCI | CCNGG | 3 cut(s) | 69, 1075, 1894 |
| BstSFI | CTRYAG | 2 cut(s) | 1875, 2060 |
| BstSLI | GKGCMC | 1 cut(s) | 1130 |
| BstUI | CGCG | 2 cut(s) | 222, 1806 |
| BstV1I | GCAGC | 5 cut(s) | 1085, 1411, 1850, 2046, 2089 |
| BstV2I | GAAGAC | 3 cut(s) | 294, 750, 1626 |
| BstX2I | RGATCY | 3 cut(s) | 271, 541, 844 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1593 |
| BstYI | RGATCY | 3 cut(s) | 271, 541, 844 |
| Bsu36I | CCTNAGG | 2 cut(s) | 513, 807 |
| BsuRI | GGCC | 2 cut(s) | 693, 1281 |
| BtsCI | GGATG | 4 cut(s) | 37, 164, 707, 1175 |
| BtsI | GCAGTG | 2 cut(s) | 982, 987 |
| BtsIMutI | CAGTG | 7 cut(s) | 363, 982, 987, 1065, 1621, 1674, 2138 |
| Cac8I | GCNNGC | 5 cut(s) | 159, 410, 488, 1449, 2064 |
| CaiI | CAGNNNCTG | 2 cut(s) | 331, 814 |
| CfoI | GCGC | 4 cut(s) | 1383, 1453, 1808, 1909 |
| Cfr13I | GGNCC | 6 cut(s) | 604, 928, 1517, 1736, 2021, 2168 |
| CseI | GACGC | 3 cut(s) | 956, 1499, 1992 |
| CsiI | ACCWGGT | 1 cut(s) | 1894 |
| Csp6I | GTAC | 1 cut(s) | 518 |
| CviQI | GTAC | 1 cut(s) | 518 |
| DinI | GGCGCC | 1 cut(s) | 1908 |
| DpnI | GATC | 5 cut(s) | 204, 273, 543, 846, 1828 |
| DpnII | GATC | 5 cut(s) | 202, 271, 541, 844, 1826 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1597 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1597 |
| EciI | GGCGGA | 1 cut(s) | 2130 |
| Eco130I | CCWWGG | 2 cut(s) | 1512, 2164 |
| Eco32I | GATATC | 2 cut(s) | 905, 1468 |
| Eco47I | GGWCC | 6 cut(s) | 604, 928, 1517, 1736, 2021, 2168 |
| Eco57I | CTGAAG | 2 cut(s) | 33, 306 |
| Eco81I | CCTNAGG | 2 cut(s) | 513, 807 |
| EcoO109I | RGGNCCY | 5 cut(s) | 604, 928, 1517, 1736, 2168 |
| EcoRI | GAATTC | 1 cut(s) | 60 |
| EcoRII | CCWGG | 3 cut(s) | 69, 1075, 1894 |
| EcoRV | GATATC | 2 cut(s) | 905, 1468 |
| EcoT14I | CCWWGG | 2 cut(s) | 1512, 2164 |
| EcoT22I | ATGCAT | 1 cut(s) | 123 |
| EgeI | GGCGCC | 1 cut(s) | 1908 |
| EheI | GGCGCC | 1 cut(s) | 1908 |
| ErhI | CCWWGG | 2 cut(s) | 1512, 2164 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1425, 1457 |
| FaqI | GGGAC | 4 cut(s) | 149, 1530, 1909, 1973 |
| FauI | CCCGC | 1 cut(s) | 150 |
| FauNDI | CATATG | 4 cut(s) | 1020, 1116, 1234, 1397 |
| FblI | GTMKAC | 1 cut(s) | 105 |
| Fnu4HI | GCNGC | 6 cut(s) | 40, 1099, 1425, 1864, 2060, 2078 |
| FokI | GGATG | 4 cut(s) | 44, 151, 694, 1182 |
| Fsp4HI | GCNGC | 6 cut(s) | 40, 1099, 1425, 1864, 2060, 2078 |
| FspBI | CTAG | 8 cut(s) | 86, 263, 269, 461, 539, 686, 1448, 1740 |
| GlaI | GCGC | 4 cut(s) | 1382, 1452, 1807, 1908 |
| GluI | GCNGC | 6 cut(s) | 40, 1099, 1425, 1864, 2060, 2078 |
| GsaI | CCCAGC | 1 cut(s) | 1381 |
| GsuI | CTGGAG | 1 cut(s) | 92 |
| HaeII | RGCGCY | 1 cut(s) | 1910 |
| HaeIII | GGCC | 2 cut(s) | 693, 1281 |
| HapII | CCGG | 1 cut(s) | 1850 |
| HgaI | GACGC | 3 cut(s) | 956, 1499, 1992 |
| HhaI | GCGC | 4 cut(s) | 1383, 1453, 1808, 1909 |
| Hin1I | GRCGYC | 1 cut(s) | 1907 |
| Hin6I | GCGC | 4 cut(s) | 1381, 1451, 1806, 1907 |
| HinP1I | GCGC | 4 cut(s) | 1381, 1451, 1806, 1907 |
| HincII | GTYRAC | 2 cut(s) | 643, 1240 |
| HindII | GTYRAC | 2 cut(s) | 643, 1240 |
| HinfI | GANTC | 9 cut(s) | 231, 328, 713, 730, 1111, 1598, 1922, 1993, 2147 |
| HpaII | CCGG | 1 cut(s) | 1850 |
| HphI | GGTGA | 5 cut(s) | 564, 696, 1355, 1499, 1546 |
| Hpy166II | GTNNAC | 6 cut(s) | 106, 643, 704, 1128, 1240, 1959 |
| Hpy188I | TCNGA | 9 cut(s) | 52, 286, 712, 1049, 1723, 1777, 1998, 2110, 2154 |
| Hpy8I | GTNNAC | 6 cut(s) | 106, 643, 704, 1128, 1240, 1959 |
| HpyAV | CCTTC | 7 cut(s) | 251, 744, 1115, 1159, 1475, 1624, 1974 |
| HpyCH4III | ACNGT | 3 cut(s) | 623, 1303, 2133 |
| HpyCH4IV | ACGT | 1 cut(s) | 187 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 331, 409, 1499, 1841, 2086 |
| HpySE526I | ACGT | 1 cut(s) | 187 |
| Hsp92I | GRCGYC | 1 cut(s) | 1907 |
| HspAI | GCGC | 4 cut(s) | 1381, 1451, 1806, 1907 |
| KasI | GGCGCC | 1 cut(s) | 1906 |
| Kpn2I | TCCGGA | 1 cut(s) | 1849 |
| Kzo9I | GATC | 5 cut(s) | 202, 271, 541, 844, 1826 |
| LmnI | GCTCC | 1 cut(s) | 345 |
| Lsp1109I | GCAGC | 5 cut(s) | 1085, 1411, 1850, 2046, 2089 |
| LweI | GCATC | 4 cut(s) | 787, 954, 1051, 1906 |
| MabI | ACCWGGT | 1 cut(s) | 1894 |
| MaeI | CTAG | 8 cut(s) | 86, 263, 269, 461, 539, 686, 1448, 1740 |
| MaeII | ACGT | 1 cut(s) | 187 |
| MaeIII | GTNAC | 4 cut(s) | 557, 1414, 1487, 1670 |
| MalI | GATC | 5 cut(s) | 204, 273, 543, 846, 1828 |
| MbiI | CCGCTC | 1 cut(s) | 1182 |
| MboI | GATC | 5 cut(s) | 202, 271, 541, 844, 1826 |
| MfeI | CAATTG | 2 cut(s) | 919, 1950 |
| MflI | RGATCY | 3 cut(s) | 271, 541, 844 |
| MhlI | GDGCHC | 1 cut(s) | 1130 |
| MluI | ACGCGT | 1 cut(s) | 220 |
| Mly113I | GGCGCC | 1 cut(s) | 1907 |
| MlyI | GAGTC | 3 cut(s) | 1607, 1931, 1987 |
| MmeI | TCCRAC | 2 cut(s) | 367, 2119 |
| Mph1103I | ATGCAT | 1 cut(s) | 123 |
| MroI | TCCGGA | 1 cut(s) | 1849 |
| MroXI | GAANNNNTTC | 2 cut(s) | 381, 1110 |
| MseI | TTAA | 6 cut(s) | 395, 447, 833, 1149, 1782, 1818 |
| MslI | CAYNNNNRTG | 2 cut(s) | 210, 1106 |
| MspI | CCGG | 1 cut(s) | 1850 |
| MspR9I | CCNGG | 3 cut(s) | 71, 1077, 1896 |
| MunI | CAATTG | 2 cut(s) | 919, 1950 |
| Mva1269I | GAATGC | 2 cut(s) | 550, 1008 |
| MvaI | CCWGG | 3 cut(s) | 71, 1077, 1896 |
| MvnI | CGCG | 2 cut(s) | 222, 1806 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 331, 409, 1499, 1841, 2086 |
| NarI | GGCGCC | 1 cut(s) | 1907 |
| NdeI | CATATG | 4 cut(s) | 1020, 1116, 1234, 1397 |
| NdeII | GATC | 5 cut(s) | 202, 271, 541, 844, 1826 |
| NheI | GCTAGC | 1 cut(s) | 1447 |
| NlaIV | GGNNCC | 5 cut(s) | 83, 1074, 1518, 1793, 1908 |
| NmeAIII | GCCGAG | 1 cut(s) | 1945 |
| NmuCI | GTSAC | 2 cut(s) | 1487, 1670 |
| NsiI | ATGCAT | 1 cut(s) | 123 |
| NspI | RCATGY | 4 cut(s) | 478, 1457, 1506, 1979 |
| PctI | GAATGC | 2 cut(s) | 550, 1008 |
| PdmI | GAANNNNTTC | 2 cut(s) | 381, 1110 |
| PfeI | GAWTC | 6 cut(s) | 231, 328, 713, 730, 1111, 2147 |
| PfoI | TCCNGGA | 1 cut(s) | 69 |
| PkrI | GCNGC | 6 cut(s) | 41, 1100, 1426, 1865, 2061, 2079 |
| PleI | GAGTC | 3 cut(s) | 1606, 1930, 1987 |
| PluTI | GGCGCC | 1 cut(s) | 1910 |
| PpsI | GAGTC | 3 cut(s) | 1606, 1930, 1987 |
| PpuMI | RGGWCCY | 5 cut(s) | 604, 928, 1517, 1736, 2168 |
| PsiI | TTATAA | 1 cut(s) | 1367 |
| Psp5II | RGGWCCY | 5 cut(s) | 604, 928, 1517, 1736, 2168 |
| Psp6I | CCWGG | 3 cut(s) | 69, 1075, 1894 |
| PspFI | CCCAGC | 1 cut(s) | 1377 |
| PspGI | CCWGG | 3 cut(s) | 69, 1075, 1894 |
| PspN4I | GGNNCC | 5 cut(s) | 83, 1074, 1518, 1793, 1908 |
| PspPI | GGNCC | 6 cut(s) | 604, 928, 1517, 1736, 2021, 2168 |
| PspPPI | RGGWCCY | 5 cut(s) | 604, 928, 1517, 1736, 2168 |
| PstI | CTGCAG | 1 cut(s) | 2064 |
| PstNI | CAGNNNCTG | 2 cut(s) | 331, 814 |
| PsuI | RGATCY | 3 cut(s) | 271, 541, 844 |
| RsaI | GTAC | 1 cut(s) | 519 |
| RsaNI | GTAC | 1 cut(s) | 518 |
| RseI | CAYNNNNRTG | 2 cut(s) | 210, 1106 |
| SaqAI | TTAA | 6 cut(s) | 395, 447, 833, 1149, 1782, 1818 |
| SatI | GCNGC | 6 cut(s) | 40, 1099, 1425, 1864, 2060, 2078 |
| Sau3AI | GATC | 5 cut(s) | 202, 271, 541, 844, 1826 |
| Sau96I | GGNCC | 6 cut(s) | 604, 928, 1517, 1736, 2021, 2168 |
| SchI | GAGTC | 3 cut(s) | 1607, 1931, 1987 |
| ScrFI | CCNGG | 3 cut(s) | 71, 1077, 1896 |
| SduI | GDGCHC | 1 cut(s) | 1130 |
| SexAI | ACCWGGT | 1 cut(s) | 1894 |
| SfaNI | GCATC | 4 cut(s) | 787, 954, 1051, 1906 |
| SfcI | CTRYAG | 2 cut(s) | 1875, 2060 |
| SfoI | GGCGCC | 1 cut(s) | 1908 |
| SinI | GGWCC | 6 cut(s) | 604, 928, 1517, 1736, 2021, 2168 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 210, 1106 |
| SmlI | CTYRAG | 3 cut(s) | 491, 521, 599 |
| SmoI | CTYRAG | 3 cut(s) | 491, 521, 599 |
| SpeI | ACTAGT | 1 cut(s) | 262 |
| SsiI | CCGC | 6 cut(s) | 39, 157, 334, 1182, 1811, 2141 |
| SspDI | GGCGCC | 1 cut(s) | 1906 |
| SspI | AATATT | 1 cut(s) | 27 |
| SspMI | CTAG | 8 cut(s) | 86, 263, 269, 461, 539, 686, 1448, 1740 |
| StyD4I | CCNGG | 3 cut(s) | 69, 1075, 1894 |
| StyI | CCWWGG | 2 cut(s) | 1512, 2164 |
| TaaI | ACNGT | 3 cut(s) | 623, 1303, 2133 |
| TaiI | ACGT | 1 cut(s) | 190 |
| TaqI | TCGA | 2 cut(s) | 615, 1025 |
| TauI | GCSGC | 1 cut(s) | 42 |
| TfiI | GAWTC | 6 cut(s) | 231, 328, 713, 730, 1111, 2147 |
| Tru1I | TTAA | 6 cut(s) | 395, 447, 833, 1149, 1782, 1818 |
| Tru9I | TTAA | 6 cut(s) | 395, 447, 833, 1149, 1782, 1818 |
| TscAI | CASTG | 7 cut(s) | 370, 989, 994, 1072, 1621, 1681, 2138 |
| TseFI | GTSAC | 2 cut(s) | 1487, 1670 |
| TseI | GCWGC | 5 cut(s) | 1098, 1424, 1863, 2059, 2077 |
| Tsp45I | GTSAC | 2 cut(s) | 1487, 1670 |
| TspDTI | ATGAA | 6 cut(s) | 114, 726, 854, 1103, 1311, 1671 |
| TspRI | CASTG | 7 cut(s) | 370, 989, 994, 1072, 1621, 1681, 2138 |
| VneI | GTGCAC | 1 cut(s) | 1126 |
| VpaK11BI | GGWCC | 6 cut(s) | 604, 928, 1517, 1736, 2021, 2168 |
| XapI | RAATTY | 7 cut(s) | 60, 377, 628, 676, 1009, 1256, 1337 |
| XbaI | TCTAGA | 3 cut(s) | 268, 538, 685 |
| XceI | RCATGY | 4 cut(s) | 478, 1457, 1506, 1979 |
| XmiI | GTMKAC | 1 cut(s) | 105 |
| XmnI | GAANNNNTTC | 2 cut(s) | 381, 1110 |
| XspI | CTAG | 8 cut(s) | 86, 263, 269, 461, 539, 686, 1448, 1740 |
| Zsp2I | ATGCAT | 1 cut(s) | 123 |