TMV resistance protein N-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 753, 917, 2972 |
| AccB1I | GGYRCC | 1 cut(s) | 618 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 48 |
| AccI | GTMKAC | 1 cut(s) | 84 |
| AccII | CGCG | 2 cut(s) | 91, 119 |
| AciI | CCGC | 7 cut(s) | 78, 119, 254, 2487, 2784, 3111, 3140 |
| AclI | AACGTT | 1 cut(s) | 894 |
| AclWI | GGATC | 5 cut(s) | 230, 685, 914, 2454, 3234 |
| AcoI | YGGCCR | 2 cut(s) | 612, 2071 |
| AcsI | RAATTY | 9 cut(s) | 702, 759, 845, 1314, 1562, 2138, 2560, 2567, 3344 |
| AcuI | CTGAAG | 7 cut(s) | 58, 336, 1313, 1665, 1739, 1922, 3224 |
| AfaI | GTAC | 8 cut(s) | 945, 1689, 1717, 1787, 2271, 2470, 2989, 3160 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 48, 118, 312, 1166, 2069, 2596, 2882, 3073 |
| AflIII | ACRYGT | 3 cut(s) | 319, 607, 3041 |
| AhlI | ACTAGT | 1 cut(s) | 1876 |
| AjnI | CCWGG | 4 cut(s) | 614, 1567, 2131, 2677 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1265, 1297 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2802, 2834 |
| Alw21I | GWGCWC | 2 cut(s) | 1128, 2732 |
| Alw26I | GTCTC | 2 cut(s) | 275, 2156 |
| Alw44I | GTGCAC | 1 cut(s) | 2728 |
| AlwI | GGATC | 5 cut(s) | 230, 685, 914, 2454, 3234 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2546 |
| Ama87I | CYCGRG | 1 cut(s) | 2875 |
| AoxI | GGCC | 7 cut(s) | 6, 106, 612, 1258, 2071, 3057, 3275 |
| ApaI | GGGCCC | 1 cut(s) | 10 |
| ApaLI | GTGCAC | 1 cut(s) | 2728 |
| ApeKI | GCWGC | 4 cut(s) | 491, 737, 1771, 2382 |
| ApoI | RAATTY | 9 cut(s) | 702, 759, 845, 1314, 1562, 2138, 2560, 2567, 3344 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2599, 2631 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 634, 1314 |
| AspLEI | GCGC | 2 cut(s) | 93, 385 |
| AspS9I | GGNCC | 6 cut(s) | 6, 7, 106, 511, 1016, 3275 |
| AsuC2I | CCSGG | 3 cut(s) | 143, 203, 1020 |
| AsuHPI | GGTGA | 5 cut(s) | 295, 1565, 1980, 2051, 2649 |
| AvaI | CYCGRG | 1 cut(s) | 2875 |
| AvaII | GGWCC | 2 cut(s) | 511, 1016 |
| AxyI | CCTNAGG | 3 cut(s) | 1305, 2409, 3054 |
| BaeGI | GKGCMC | 3 cut(s) | 10, 2334, 2732 |
| BalI | TGGCCA | 2 cut(s) | 614, 2073 |
| BanI | GGYRCC | 1 cut(s) | 618 |
| BanII | GRGCYC | 2 cut(s) | 10, 1128 |
| BauI | CACGAG | 1 cut(s) | 639 |
| BbsI | GAAGAC | 2 cut(s) | 1301, 1653 |
| Bbv12I | GWGCWC | 2 cut(s) | 1128, 2732 |
| BbvI | GCAGC | 4 cut(s) | 478, 724, 1783, 2369 |
| BccI | CCATC | 9 cut(s) | 345, 706, 1427, 2082, 2215, 2766, 2876, 3266, 3286 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2839, 2873 |
| BciT130I | CCWGG | 4 cut(s) | 616, 1569, 2133, 2679 |
| BciVI | GTATCC | 2 cut(s) | 131, 2245 |
| BcnI | CCSGG | 3 cut(s) | 143, 203, 1020 |
| BcoDI | GTCTC | 2 cut(s) | 275, 2156 |
| BcuI | ACTAGT | 1 cut(s) | 1876 |
| BfaI | CTAG | 5 cut(s) | 1319, 1349, 1667, 1877, 3185 |
| BfmI | CTRYAG | 2 cut(s) | 2765, 3315 |
| BfoI | RGCGCY | 1 cut(s) | 386 |
| BfuI | GTATCC | 2 cut(s) | 131, 2245 |
| BisI | GCNGC | 6 cut(s) | 79, 120, 492, 738, 1772, 2383 |
| BlsI | GCNGC | 6 cut(s) | 80, 121, 493, 739, 1773, 2384 |
| Bme1390I | CCNGG | 7 cut(s) | 143, 203, 616, 1020, 1569, 2133, 2679 |
| Bme18I | GGWCC | 2 cut(s) | 511, 1016 |
| BmeT110I | CYCGRG | 1 cut(s) | 2875 |
| BmgT120I | GGNCC | 6 cut(s) | 6, 7, 106, 511, 1016, 3275 |
| BmiI | GGNNCC | 6 cut(s) | 8, 16, 587, 620, 1927, 2676 |
| BmrFI | CCNGG | 7 cut(s) | 143, 203, 616, 1020, 1569, 2133, 2679 |
| BmrI | ACTGGG | 2 cut(s) | 320, 3288 |
| BmsI | GCATC | 5 cut(s) | 889, 1476, 1506, 2389, 2490 |
| BmuI | ACTGGG | 2 cut(s) | 320, 3288 |
| BpiI | GAAGAC | 2 cut(s) | 1301, 1653 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 463, 495 |
| BpuEI | CTTGAG | 5 cut(s) | 88, 471, 652, 1142, 1590 |
| BpuMI | CCSGG | 3 cut(s) | 143, 203, 1020 |
| Bsa29I | ATCGAT | 2 cut(s) | 153, 633 |
| BsaBI | GATNNNNATC | 4 cut(s) | 227, 2946, 3225, 3288 |
| BsaJI | CCNNGG | 3 cut(s) | 10, 1567, 2132 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 32, 912, 942 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 48, 118, 312, 1166, 2069, 2596, 2882, 3073 |
| Bse1I | ACTGG | 7 cut(s) | 285, 315, 657, 1224, 1707, 2182, 3294 |
| Bse21I | CCTNAGG | 3 cut(s) | 1305, 2409, 3054 |
| Bse3DI | GCAATG | 3 cut(s) | 100, 473, 2729 |
| Bse8I | GATNNNNATC | 4 cut(s) | 227, 2946, 3225, 3288 |
| BseBI | CCWGG | 4 cut(s) | 616, 1569, 2133, 2679 |
| BseCI | ATCGAT | 2 cut(s) | 153, 633 |
| BseDI | CCNNGG | 3 cut(s) | 10, 1567, 2132 |
| BseJI | GATNNNNATC | 4 cut(s) | 227, 2946, 3225, 3288 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 48, 118, 312, 1166, 2069, 2596, 2882, 3073 |
| BseMI | GCAATG | 3 cut(s) | 100, 473, 2729 |
| BseNI | ACTGG | 7 cut(s) | 285, 315, 657, 1224, 1707, 2182, 3294 |
| BseRI | GAGGAG | 3 cut(s) | 10, 22, 3030 |
| BseSI | GKGCMC | 3 cut(s) | 10, 2334, 2732 |
| BseXI | GCAGC | 4 cut(s) | 478, 724, 1783, 2369 |
| BseYI | CCCAGC | 3 cut(s) | 590, 995, 2590 |
| BsgI | GTGCAG | 1 cut(s) | 1790 |
| Bsh1236I | CGCG | 2 cut(s) | 91, 119 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1484 |
| BshFI | GGCC | 7 cut(s) | 8, 108, 614, 1260, 2073, 3059, 3277 |
| BshNI | GGYRCC | 1 cut(s) | 618 |
| BshVI | ATCGAT | 2 cut(s) | 153, 633 |
| BsiEI | CGRYCG | 1 cut(s) | 1484 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1128, 2732 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2875 |
| BsiSI | CCGG | 3 cut(s) | 142, 202, 1019 |
| BslFI | GGGAC | 2 cut(s) | 3090, 3206 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 48, 118, 312, 1166, 2069, 2596, 2882, 3073 |
| BsmAI | GTCTC | 2 cut(s) | 275, 2156 |
| BsmFI | GGGAC | 2 cut(s) | 3090, 3206 |
| BsmI | GAATGC | 2 cut(s) | 1724, 2114 |
| BsnI | GGCC | 7 cut(s) | 8, 108, 614, 1260, 2073, 3059, 3277 |
| BsoBI | CYCGRG | 1 cut(s) | 2875 |
| Bsp120I | GGGCCC | 1 cut(s) | 6 |
| Bsp1286I | GDGCHC | 4 cut(s) | 10, 1128, 2334, 2732 |
| Bsp143I | GATC | 8 cut(s) | 163, 222, 288, 677, 906, 1957, 2446, 3226 |
| BspACI | CCGC | 7 cut(s) | 78, 119, 254, 2487, 2784, 3111, 3140 |
| BspANI | GGCC | 7 cut(s) | 8, 108, 614, 1260, 2073, 3059, 3277 |
| BspDI | ATCGAT | 2 cut(s) | 153, 633 |
| BspFNI | CGCG | 2 cut(s) | 91, 119 |
| BspLI | GGNNCC | 6 cut(s) | 8, 16, 587, 620, 1927, 2676 |
| BspPI | GGATC | 5 cut(s) | 230, 685, 914, 2454, 3234 |
| BspT107I | GGYRCC | 1 cut(s) | 618 |
| BsrDI | GCAATG | 3 cut(s) | 100, 473, 2729 |
| BsrI | ACTGG | 7 cut(s) | 285, 315, 657, 1224, 1707, 2182, 3294 |
| BssECI | CCNNGG | 3 cut(s) | 10, 1567, 2132 |
| BssMI | GATC | 8 cut(s) | 163, 222, 288, 677, 906, 1957, 2446, 3226 |
| BssSI | CACGAG | 1 cut(s) | 639 |
| Bst2BI | CACGAG | 1 cut(s) | 639 |
| Bst2UI | CCWGG | 4 cut(s) | 616, 1569, 2133, 2679 |
| Bst4CI | ACNGT | 9 cut(s) | 198, 913, 1182, 1482, 1495, 2088, 2376, 2542, 2968 |
| Bst6I | CTCTTC | 4 cut(s) | 28, 207, 2172, 3161 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1525 |
| BstC8I | GCNNGC | 5 cut(s) | 1140, 1662, 1823, 3000, 3004 |
| BstDSI | CCRYGG | 1 cut(s) | 10 |
| BstEII | GGTNACC | 2 cut(s) | 1571, 1612 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3071 |
| BstFNI | CGCG | 2 cut(s) | 91, 119 |
| BstH2I | RGCGCY | 1 cut(s) | 386 |
| BstHHI | GCGC | 2 cut(s) | 93, 385 |
| BstKTI | GATC | 8 cut(s) | 166, 225, 291, 680, 909, 1960, 2449, 3229 |
| BstMAI | GTCTC | 2 cut(s) | 275, 2156 |
| BstMBI | GATC | 8 cut(s) | 163, 222, 288, 677, 906, 1957, 2446, 3226 |
| BstMCI | CGRYCG | 1 cut(s) | 1484 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 14, 78, 105, 743, 1525, 3103 |
| BstNI | CCWGG | 4 cut(s) | 616, 1569, 2133, 2679 |
| BstNSI | RCATGY | 5 cut(s) | 323, 611, 1142, 1894, 3045 |
| BstPI | GGTNACC | 2 cut(s) | 1571, 1612 |
| BstSCI | CCNGG | 7 cut(s) | 141, 201, 614, 1018, 1567, 2131, 2677 |
| BstSFI | CTRYAG | 2 cut(s) | 2765, 3315 |
| BstSLI | GKGCMC | 3 cut(s) | 10, 2334, 2732 |
| BstUI | CGCG | 2 cut(s) | 91, 119 |
| BstV1I | GCAGC | 4 cut(s) | 478, 724, 1783, 2369 |
| BstV2I | GAAGAC | 2 cut(s) | 1301, 1653 |
| BstX2I | RGATCY | 2 cut(s) | 222, 2446 |
| BstYI | RGATCY | 2 cut(s) | 222, 2446 |
| Bsu15I | ATCGAT | 2 cut(s) | 153, 633 |
| Bsu36I | CCTNAGG | 3 cut(s) | 1305, 2409, 3054 |
| BsuI | GTATCC | 2 cut(s) | 131, 2245 |
| BsuRI | GGCC | 7 cut(s) | 8, 108, 614, 1260, 2073, 3059, 3277 |
| BsuTUI | ATCGAT | 2 cut(s) | 153, 633 |
| BtgI | CCRYGG | 1 cut(s) | 10 |
| BtsIMutI | CAGTG | 5 cut(s) | 522, 909, 1217, 2175, 2667 |
| Cac8I | GCNNGC | 5 cut(s) | 1140, 1662, 1823, 3000, 3004 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2546 |
| CfoI | GCGC | 2 cut(s) | 93, 385 |
| Cfr13I | GGNCC | 6 cut(s) | 6, 7, 106, 511, 1016, 3275 |
| ClaI | ATCGAT | 2 cut(s) | 153, 633 |
| Csp6I | GTAC | 8 cut(s) | 944, 1688, 1716, 1786, 2270, 2469, 2988, 3159 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1250, 1285 |
| CviQI | GTAC | 8 cut(s) | 944, 1688, 1716, 1786, 2270, 2469, 2988, 3159 |
| DpnI | GATC | 8 cut(s) | 165, 224, 290, 679, 908, 1959, 2448, 3228 |
| DpnII | GATC | 8 cut(s) | 163, 222, 288, 677, 906, 1957, 2446, 3226 |
| DraI | TTTAAA | 1 cut(s) | 1839 |
| EaeI | YGGCCR | 2 cut(s) | 612, 2071 |
| Eam1104I | CTCTTC | 4 cut(s) | 28, 207, 2172, 3161 |
| EarI | CTCTTC | 4 cut(s) | 28, 207, 2172, 3161 |
| EciI | GGCGGA | 1 cut(s) | 3155 |
| Ecl136II | GAGCTC | 1 cut(s) | 1126 |
| Eco147I | AGGCCT | 1 cut(s) | 3059 |
| Eco24I | GRGCYC | 2 cut(s) | 10, 1128 |
| Eco47I | GGWCC | 2 cut(s) | 511, 1016 |
| Eco53kI | GAGCTC | 1 cut(s) | 1126 |
| Eco57I | CTGAAG | 7 cut(s) | 58, 336, 1313, 1665, 1739, 1922, 3224 |
| Eco81I | CCTNAGG | 3 cut(s) | 1305, 2409, 3054 |
| Eco88I | CYCGRG | 1 cut(s) | 2875 |
| Eco91I | GGTNACC | 2 cut(s) | 1571, 1612 |
| EcoICRI | GAGCTC | 1 cut(s) | 1126 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3071 |
| EcoO109I | RGGNCCY | 1 cut(s) | 6 |
| EcoO65I | GGTNACC | 2 cut(s) | 1571, 1612 |
| EcoRI | GAATTC | 2 cut(s) | 1562, 2138 |
| EcoRII | CCWGG | 4 cut(s) | 614, 1567, 2131, 2677 |
| EcoT22I | ATGCAT | 1 cut(s) | 3219 |
| EcoT38I | GRGCYC | 2 cut(s) | 10, 1128 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 531, 563, 2074, 2106 |
| FaqI | GGGAC | 2 cut(s) | 3090, 3206 |
| FauI | CCCGC | 1 cut(s) | 3104 |
| FblI | GTMKAC | 1 cut(s) | 84 |
| Fnu4HI | GCNGC | 6 cut(s) | 79, 120, 492, 738, 1772, 2383 |
| FriOI | GRGCYC | 2 cut(s) | 10, 1128 |
| Fsp4HI | GCNGC | 6 cut(s) | 79, 120, 492, 738, 1772, 2383 |
| FspBI | CTAG | 5 cut(s) | 1319, 1349, 1667, 1877, 3185 |
| GlaI | GCGC | 2 cut(s) | 92, 384 |
| GluI | GCNGC | 6 cut(s) | 79, 120, 492, 738, 1772, 2383 |
| GsaI | CCCAGC | 3 cut(s) | 594, 999, 2594 |
| HaeII | RGCGCY | 1 cut(s) | 386 |
| HaeIII | GGCC | 7 cut(s) | 8, 108, 614, 1260, 2073, 3059, 3277 |
| HapII | CCGG | 3 cut(s) | 142, 202, 1019 |
| HhaI | GCGC | 2 cut(s) | 93, 385 |
| Hin6I | GCGC | 2 cut(s) | 91, 383 |
| HinP1I | GCGC | 2 cut(s) | 91, 383 |
| HindIII | AAGCTT | 4 cut(s) | 348, 545, 1336, 2498 |
| HpaII | CCGG | 3 cut(s) | 142, 202, 1019 |
| HphI | GGTGA | 5 cut(s) | 295, 1565, 1980, 2051, 2649 |
| Hpy166II | GTNNAC | 5 cut(s) | 85, 1478, 2098, 2126, 2730 |
| Hpy8I | GTNNAC | 5 cut(s) | 85, 1478, 2098, 2126, 2730 |
| Hpy99I | CGWCG | 1 cut(s) | 800 |
| HpyCH4III | ACNGT | 9 cut(s) | 198, 913, 1182, 1482, 1495, 2088, 2376, 2542, 2968 |
| HpyCH4IV | ACGT | 5 cut(s) | 798, 894, 934, 1650, 1767 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 14, 78, 105, 743, 1525, 3103 |
| HpySE526I | ACGT | 5 cut(s) | 798, 894, 934, 1650, 1767 |
| HspAI | GCGC | 2 cut(s) | 91, 383 |
| Kzo9I | GATC | 8 cut(s) | 163, 222, 288, 677, 906, 1957, 2446, 3226 |
| LmnI | GCTCC | 2 cut(s) | 14, 591 |
| Lsp1109I | GCAGC | 4 cut(s) | 478, 724, 1783, 2369 |
| LweI | GCATC | 5 cut(s) | 889, 1476, 1506, 2389, 2490 |
| MaeI | CTAG | 5 cut(s) | 1319, 1349, 1667, 1877, 3185 |
| MaeII | ACGT | 5 cut(s) | 798, 894, 934, 1650, 1767 |
| MaeIII | GTNAC | 7 cut(s) | 803, 890, 1388, 1489, 1571, 1612, 2542 |
| MalI | GATC | 8 cut(s) | 165, 224, 290, 679, 908, 1959, 2448, 3228 |
| MboI | GATC | 8 cut(s) | 163, 222, 288, 677, 906, 1957, 2446, 3226 |
| MfeI | CAATTG | 2 cut(s) | 990, 1280 |
| MflI | RGATCY | 2 cut(s) | 222, 2446 |
| MhlI | GDGCHC | 4 cut(s) | 10, 1128, 2334, 2732 |
| MlsI | TGGCCA | 2 cut(s) | 614, 2073 |
| MluNI | TGGCCA | 2 cut(s) | 614, 2073 |
| MlyI | GAGTC | 5 cut(s) | 224, 1009, 2158, 2431, 2899 |
| MmeI | TCCRAC | 5 cut(s) | 607, 679, 955, 1378, 2165 |
| Mox20I | TGGCCA | 2 cut(s) | 614, 2073 |
| Mph1103I | ATGCAT | 1 cut(s) | 3219 |
| MroXI | GAANNNNTTC | 2 cut(s) | 634, 1314 |
| MscI | TGGCCA | 2 cut(s) | 614, 2073 |
| MslI | CAYNNNNRTG | 2 cut(s) | 405, 2708 |
| Msp20I | TGGCCA | 2 cut(s) | 614, 2073 |
| MspA1I | CMGCKG | 4 cut(s) | 78, 737, 2487, 2744 |
| MspI | CCGG | 3 cut(s) | 142, 202, 1019 |
| MspR9I | CCNGG | 7 cut(s) | 143, 203, 616, 1020, 1569, 2133, 2679 |
| MunI | CAATTG | 2 cut(s) | 990, 1280 |
| Mva1269I | GAATGC | 2 cut(s) | 1724, 2114 |
| MvaI | CCWGG | 4 cut(s) | 616, 1569, 2133, 2679 |
| MvnI | CGCG | 2 cut(s) | 91, 119 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 14, 78, 105, 743, 1525, 3103 |
| NciI | CCSGG | 3 cut(s) | 143, 203, 1020 |
| NdeII | GATC | 8 cut(s) | 163, 222, 288, 677, 906, 1957, 2446, 3226 |
| NlaIV | GGNNCC | 6 cut(s) | 8, 16, 587, 620, 1927, 2676 |
| NmuCI | GTSAC | 2 cut(s) | 803, 1571 |
| NsiI | ATGCAT | 1 cut(s) | 3219 |
| NspI | RCATGY | 5 cut(s) | 323, 611, 1142, 1894, 3045 |
| PaeI | GCATGC | 1 cut(s) | 1142 |
| PceI | AGGCCT | 1 cut(s) | 3059 |
| PciI | ACATGT | 3 cut(s) | 319, 607, 3041 |
| PctI | GAATGC | 2 cut(s) | 1724, 2114 |
| PdmI | GAANNNNTTC | 2 cut(s) | 634, 1314 |
| PflFI | GACNNNGTC | 1 cut(s) | 1415 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 48 |
| PfoI | TCCNGGA | 1 cut(s) | 1018 |
| PkrI | GCNGC | 6 cut(s) | 80, 121, 493, 739, 1773, 2384 |
| PleI | GAGTC | 5 cut(s) | 223, 1008, 2158, 2430, 2899 |
| PpsI | GAGTC | 5 cut(s) | 223, 1008, 2158, 2430, 2899 |
| PscI | ACATGT | 3 cut(s) | 319, 607, 3041 |
| PsiI | TTATAA | 3 cut(s) | 753, 917, 2972 |
| Psp124BI | GAGCTC | 1 cut(s) | 1128 |
| Psp1406I | AACGTT | 1 cut(s) | 894 |
| Psp6I | CCWGG | 4 cut(s) | 614, 1567, 2131, 2677 |
| PspEI | GGTNACC | 2 cut(s) | 1571, 1612 |
| PspFI | CCCAGC | 3 cut(s) | 590, 995, 2590 |
| PspGI | CCWGG | 4 cut(s) | 614, 1567, 2131, 2677 |
| PspN4I | GGNNCC | 6 cut(s) | 8, 16, 587, 620, 1927, 2676 |
| PspOMI | GGGCCC | 1 cut(s) | 6 |
| PspPI | GGNCC | 6 cut(s) | 6, 7, 106, 511, 1016, 3275 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2546 |
| PsuI | RGATCY | 2 cut(s) | 222, 2446 |
| PsyI | GACNNNGTC | 1 cut(s) | 1415 |
| PvuII | CAGCTG | 2 cut(s) | 737, 2744 |
| RsaI | GTAC | 8 cut(s) | 945, 1689, 1717, 1787, 2271, 2470, 2989, 3160 |
| RsaNI | GTAC | 8 cut(s) | 944, 1688, 1716, 1786, 2270, 2469, 2988, 3159 |
| RseI | CAYNNNNRTG | 2 cut(s) | 405, 2708 |
| SacI | GAGCTC | 1 cut(s) | 1128 |
| SatI | GCNGC | 6 cut(s) | 79, 120, 492, 738, 1772, 2383 |
| Sau3AI | GATC | 8 cut(s) | 163, 222, 288, 677, 906, 1957, 2446, 3226 |
| Sau96I | GGNCC | 6 cut(s) | 6, 7, 106, 511, 1016, 3275 |
| SchI | GAGTC | 5 cut(s) | 224, 1009, 2158, 2431, 2899 |
| ScrFI | CCNGG | 7 cut(s) | 143, 203, 616, 1020, 1569, 2133, 2679 |
| SduI | GDGCHC | 4 cut(s) | 10, 1128, 2334, 2732 |
| SfaNI | GCATC | 5 cut(s) | 889, 1476, 1506, 2389, 2490 |
| SfcI | CTRYAG | 2 cut(s) | 2765, 3315 |
| SinI | GGWCC | 2 cut(s) | 511, 1016 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 405, 2708 |
| SmlI | CTYRAG | 5 cut(s) | 67, 486, 667, 1121, 1605 |
| SmoI | CTYRAG | 5 cut(s) | 67, 486, 667, 1121, 1605 |
| SpeI | ACTAGT | 1 cut(s) | 1876 |
| SphI | GCATGC | 1 cut(s) | 1142 |
| SseBI | AGGCCT | 1 cut(s) | 3059 |
| SsiI | CCGC | 7 cut(s) | 78, 119, 254, 2487, 2784, 3111, 3140 |
| SspI | AATATT | 4 cut(s) | 390, 1428, 2238, 2441 |
| SspMI | CTAG | 5 cut(s) | 1319, 1349, 1667, 1877, 3185 |
| SstI | GAGCTC | 1 cut(s) | 1128 |
| StuI | AGGCCT | 1 cut(s) | 3059 |
| StyD4I | CCNGG | 7 cut(s) | 141, 201, 614, 1018, 1567, 2131, 2677 |
| TaaI | ACNGT | 9 cut(s) | 198, 913, 1182, 1482, 1495, 2088, 2376, 2542, 2968 |
| TaiI | ACGT | 5 cut(s) | 801, 897, 937, 1653, 1770 |
| TaqI | TCGA | 6 cut(s) | 153, 210, 633, 680, 2865, 3301 |
| TatI | WGTACW | 2 cut(s) | 1715, 1785 |
| TauI | GCSGC | 2 cut(s) | 81, 122 |
| TscAI | CASTG | 5 cut(s) | 529, 916, 1224, 2182, 2674 |
| TseFI | GTSAC | 2 cut(s) | 803, 1571 |
| TseI | GCWGC | 4 cut(s) | 491, 737, 1771, 2382 |
| Tsp45I | GTSAC | 2 cut(s) | 803, 1571 |
| TspGWI | ACGGA | 3 cut(s) | 27, 404, 1463 |
| TspRI | CASTG | 5 cut(s) | 529, 916, 1224, 2182, 2674 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1415 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 48 |
| VneI | GTGCAC | 1 cut(s) | 2728 |
| VpaK11BI | GGWCC | 2 cut(s) | 511, 1016 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3071 |
| XapI | RAATTY | 9 cut(s) | 702, 759, 845, 1314, 1562, 2138, 2560, 2567, 3344 |
| XbaI | TCTAGA | 2 cut(s) | 1318, 1666 |
| XceI | RCATGY | 5 cut(s) | 323, 611, 1142, 1894, 3045 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2342 |
| XmiI | GTMKAC | 1 cut(s) | 84 |
| XmnI | GAANNNNTTC | 2 cut(s) | 634, 1314 |
| XspI | CTAG | 5 cut(s) | 1319, 1349, 1667, 1877, 3185 |
| Zsp2I | ATGCAT | 1 cut(s) | 3219 |