MD02G1041700.v1.1

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
3394377 .. 3398101
3725 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1041700.v1.1.491

Sequence Viewer

Length: 2280 bp
ATGACGGCCCATGAAGCCTCCTCTTCATCCTCCTCCGAGTCAAAACTTTGGAATTACGACGTGTTCTTGAGCTTCAGTGGCGAAGACACGCGCCATGGCTTCACGGGCAACCTCCACGCGACTTTAAAAGACCGGGGATTCCAGGCTTATATGGATGAAGACGATCTAGAAAGAGGGGAAGATATAAAAGAGCAACTGTTCCGGGCAATCGAAGAGTCGAGGATCTCTATCATTGTCTTCTCAAAGATGTATGCGGATTCGAGTTGGTGTCTTAACGAGCTGGTGAAGATTATGGAGTGCAAATCCAAACTGGGTCGACATGTTTTGCCAATATTCTATCACGTTGATCCTTCGCATGTCAGGAAGCAGGACGGAGATTTAGCCGAAGCATTTCAGAAACACGAAAAAGACATCTGTGAAGAACAAGATGACAAGAAACGTGAAGCTAAACAAAAACAAGCAAATCAGTGGAGAGAGGCTCTTACAAGAGCTGGAAATTTGTCCGGCCACCATCTTCGAATTACTGACAATAGGCGGGAAGCAGAGGTTATTAGAAAAATTATTGAGGAGATTATTATGAAATGGCTTCCGAGAACAAATGAACTAAATGTGGCCGAGCACCCAATTGAAATCAAATCTCGCATTCTACGTATTATCAATCATCTTTCAGGTGGTGGATCAAATAAAGTTGTCATGGTTGGAATTTGGGGGATGGGTGGATGGGGTAAAACAACAGCCGCCAAAGCCATTTATAACCAAATTCATGGTGAGTTCCAATCCAAAATTTTCCTTGATGACATTAGAGACGCTACAAGTAAACATGGTCTAGTTTATTTGCAAAAAAAACTTGTTTCTGCCATCTTGAAAAGTAAGCGTCAAATAAGAAGTGTTGGTGAAGGTATTGAACTGATAAAACAAGAATTTCAACATAGAAGGGTACTTCTCATCATGGACAACGTAGATAAAGGGGACCAACTCAATGCAATAGCTGGAAATCAGGATTGGTTTGGTCCAGGAAGTAGAATTATCATAACGACACGAGATAAACATTTACTAAAGAAAGTGGATGAGATATATGAGGTTCAGAAATTGAATGATGGAGAAGCTTTGAAGCTCTTTAGTTGGCATGCTTTTGGAAATAATTGGCCTGACGAAGGATATCTTCAAATCTCAGAAAAGTTTGTTTCATACTGTAAAGGTTTGCCATTAGCCCTTAAAACTTTAGGTTCTTTGTTGTTAAAAAGACCCATAGAAGAGTGGGAAAGTCAACTGGAGACATTGGATCCTGATGGAGAAATAATAGAACAACTAAAAATAAGCTTCCAAGGGCTAACGGAAAAACAAAAGGCTATATTCCTTGACATATCTTGTTTCTTTATTGGATGGAATAAGGAATACGTCGCAAAAGTATTAGATGGAATAATAGATATTAGTATCCTTTGCGAACGATGCCTTGTAACTATTGAACGCAACGTGTTGAATATGCATGATTTGATTCGAGAAATGGCTGGAGTAATCATTTCTGAAAAATCCCCCAGTCATCCTAGAAAATGGAGTAGGCTGAGGAATCTTCAAGAGGTCACAGATGTATTGACAAATAAATCTGAATCTGAAGAAATTGTCGCACTAATTATTGATTTGCAGAGCTCGAACAATGATAGTTTCAGTACAGTAGCATTTGCCAATATGAAGAAATTGAAATTTCTCCAGCTATACCACGTAAAACTAGATGGAGAATACAAATATCTTTCCAAAGAGTTAAAGTGGTTGCGCTGGTATAGATGTCATTTGAAGTCCATACCAGATGACTTTTTTCGTCAAGACAAACTAGTTTGTATAGATATGCGGTTTAGCCAACTGGTACAAGTTTGGAAGGGTTCCCAGTCGCTTCGGAGGTTGAAAATCATGAATCTCAGTCATTCCTATTCCTTAATAGAATCACCAGACTTTTCAAAGGTCCCAGATCTTAAAGAGTTGATATTGGAAAATTGTGCTAGTTTGTCCGAGATTCACCCCTTCATTGGACAGCTTAAAAATCTCTCTTTGGTAAACCTTAGAAACTGTTACAGTCTTAGTTCTCTTCCAAGTGATTTCTATAAGTCCAAATCTGTTAGGACTCTTTGTCTTAATAATTGTCCGAAATTCGGAGAACTGCATGAGGATTTAGGGGAGATGGAATCACTGGAAATACTTGAAGCAGAGGATACAGCCATAAGACATATACCAACTTCCATAGCAAGATTGAAGAAACTCACTCGTTTCTCTGTAAGGTTTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

760

Amino Acids

87.49

Weight (kDa)

7.33

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 18 - 197 4.8e-47 TIR domain
TIR_2 PF13676 21 - 120 3.3e-17 TIR domain
NB-ARC PF00931 214 - 380 2e-17 NB-ARC domain
WHD_ROQ1 PF23282 446 - 511 1.7e-09 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36930 AT5G36930 AT5G36930 AT5G36930
fragaria_vesca FvH4_3g45361 FvH4_3g45380 FvH4_5g21061 FvH4_5g21062 FvH4_5g21063 FvH4_5g32050 FvH4_5g32970 FvH4_5g32990 FvH4_5g34190 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34211 FvH4_5g34240 FvH4_5g34250
malus_domestica MD00G1011700.v1.1 MD00G1026100.v1.1 MD00G1026500.v1.1 MD00G1027000.v1.1 MD00G1027100.v1.1 MD00G1027700.v1.1 MD00G1027800.v1.1 MD00G1028000.v1.1 MD00G1220000.v1.1 MD02G1024400.v1.1 MD02G1024800.v1.1 MD02G1026000.v1.1 MD02G1026100.v1.1 MD02G1031800.v1.1 MD02G1038500.v1.1 MD02G1038700.v1.1 MD02G1039200.v1.1 MD02G1040600.v1.1 MD02G1040900.v1.1 MD02G1041200.v1.1 MD02G1041300.v1.1 MD02G1041700.v1.1 MD02G1042000.v1.1 MD02G1043800.v1.1 MD02G1043900.v1.1 MD02G1044300.v1.1 MD02G1045200.v1.1 MD02G1045300.v1.1 MD02G1051200.v1.1 MD02G1052200.v1.1 MD02G1052800.v1.1 MD02G1053100.v1.1 MD02G1053600.v1.1 MD02G1055500.v1.1 MD02G1063300.v1.1 MD02G1063400.v1.1 MD02G1063800.v1.1 MD02G1306500.v1.1 MD02G1306600.v1.1 MD02G1306700.v1.1 MD02G1306900.v1.1 MD02G1307200.v1.1 MD04G1011700.v1.1 MD05G1315400.v1.1 MD05G1316000.v1.1 MD05G1316700.v1.1 MD05G1317000.v1.1 MD05G1317300.v1.1 MD05G1317600.v1.1 MD05G1317700.v1.1 MD07G1102800.v1.1 MD07G1238200.v1.1 MD08G1175900.v1.1 MD08G1203600.v1.1 MD09G1024200.v1.1 MD09G1039600.v1.1 MD09G1044800.v1.1 MD09G1045100.v1.1 MD10G1038700.v1.1 MD10G1039000.v1.1 MD10G1039200.v1.1 MD10G1040000.v1.1 MD10G1040200.v1.1 MD10G1040600.v1.1 MD10G1040800.v1.1 MD10G1297300.v1.1 MD12G1247500.v1.1 MD12G1247900.v1.1 MD12G1248300.v1.1 MD12G1248800.v1.1 MD15G1103700.v1.1 MD15G1103800.v1.1 MD15G1104000.v1.1 MD15G1179600.v1.1 MD15G1182500.v1.1 MD16G1068200.v1.1 MD16G1068300.v1.1 MD17G1024600.v1.1 MD17G1024700.v1.1 MD17G1025000.v1.1 MD17G1025900.v1.1
prunus_persica Prupe.1G539800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G557100_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557300_v2.0.a1
pyrus_communis pycom02g02080 pycom02g02090 pycom02g02110 pycom02g03220 pycom02g03260 pycom02g03370 pycom02g03390 pycom02g03410 pycom02g03420 pycom02g03450 pycom02g03500 pycom02g03730 pycom02g03770 pycom02g04400 pycom02g04410 pycom02g04430 pycom02g04450 pycom02g04460 pycom02g04490 pycom02g05200 pycom02g25710 pycom02g25750 pycom02g25790 pycom02g25810 pycom02g25830 pycom04g00920 pycom04g00930 pycom04g00940 pycom05g29300 pycom05g29310 pycom05g29380 pycom05g29410 pycom07g06310 pycom07g21420 pycom08g15070 pycom08g17540 pycom08g17560 pycom08g17570 pycom10g02670 pycom10g02680 pycom10g02700 pycom10g02770 pycom10g02790 pycom10g02800 pycom10g02810 pycom10g25020 pycom10g25030 pycom10g25050 pycom10g25080 pycom111g01990 pycom111g02000 pycom111g02030 pycom111g02040 pycom111g02050 pycom111g02060 pycom12g22710 pycom12g22720 pycom12g22730 pycom12g22740 pycom12g22750 pycom12g22770 pycom12g22780 pycom12g22790 pycom12g22800 pycom12g22810 pycom12g22830 pycom12g22840 pycom12g22860 pycom15g09440 pycom15g09480 pycom15g16120 pycom15g32380 pycom16g05970 pycom17g02100
rosa_chinensis RchiOBHm_Chr2g0144661 RchiOBHm_Chr4g0407491 RchiOBHm_Chr4g0407501 RchiOBHm_Chr4g0412381 RchiOBHm_Chr7g0208191 RchiOBHm_Chr7g0208201 RchiOBHm_Chr7g0208211 RchiOBHm_Chr7g0208221 RchiOBHm_Chr7g0228071 RchiOBHm_Chr7g0228121 RchiOBHm_Chr7g0230971 RchiOBHm_Chr7g0230981 RchiOBHm_Chr7g0233901 RchiOBHm_Chr7g0233951 RchiOBHm_Chr7g0233961 RchiOBHm_Chr7g0233991 RchiOBHm_Chr7g0234021 RchiOBHm_Chr7g0234151 RchiOBHm_Chr7g0234161 RchiOBHm_Chr7g0234241 RchiOBHm_Chr7g0234501 RchiOBHm_Chr7g0234641 RchiOBHm_Chr7g0234771 RchiOBHm_Chr7g0234781 RchiOBHm_Chr7g0234991 RchiOBHm_Chr7g0241291 RchiOBHm_Chr7g0241301
rosa_laevigata RLG00000001186 RLG00000001187 RLG00000001212 RLG00000001226 RLG00000001233 RLG00000001590 RLG00000003242 RLG00000003243 RLG00000003249 RLG00000008688 RLG00000008690
rosa_multiflora Rmu_co7966574.1_g000001 Rmu_co8120830.1_g000001 Rmu_co8142226.1_g000001 Rmu_co8293083.1_g000001 Rmu_co8351227.1_g000001 Rmu_co8380159.1_g000001 Rmu_co8456505.1_g000001 Rmu_sc0000676.1_g000025 Rmu_sc0000706.1_g000018 Rmu_sc0000706.1_g000040 Rmu_sc0000740.1_g000029 Rmu_sc0000740.1_g000032 Rmu_sc0000740.1_g000037 Rmu_sc0000740.1_g000040 Rmu_sc0000762.1_g000003 Rmu_sc0000762.1_g000019 Rmu_sc0000762.1_g000034 Rmu_sc0000762.1_g000069 Rmu_sc0000892.1_g000001 Rmu_sc0000945.1_g000040 Rmu_sc0001913.1_g000037 Rmu_sc0001913.1_g000041 Rmu_sc0001913.1_g000049 Rmu_sc0002775.1_g000017 Rmu_sc0002775.1_g000018 Rmu_sc0002775.1_g000020 Rmu_sc0002775.1_g000021 Rmu_sc0002775.1_g000022 Rmu_sc0002775.1_g000025 Rmu_sc0002775.1_g000026 Rmu_sc0002775.1_g000028 Rmu_sc0002775.1_g000030 Rmu_sc0004858.1_g000002 Rmu_sc0004864.1_g000022 Rmu_sc0005038.1_g000023 Rmu_sc0005840.1_g000014 Rmu_sc0006724.1_g000003 Rmu_sc0006824.1_g000005 Rmu_sc0007869.1_g000003 Rmu_sc0007869.1_g000005 Rmu_sc0007869.1_g000008 Rmu_sc0008646.1_g000007 Rmu_sc0009637.1_g000009 Rmu_sc0010500.1_g000002 Rmu_sc0010500.1_g000012 Rmu_sc0012403.1_g000025 Rmu_sc0013768.1_g000025 Rmu_sc0015625.1_g000001 Rmu_sc0019715.1_g000001 Rmu_sc0021133.1_g000002 Rmu_sc0021904.1_g000001 Rmu_sc0021904.1_g000003 Rmu_sc0021904.1_g000004 Rmu_sc0022054.1_g000001 Rmu_sc0026025.1_g000001 Rmu_sc0036828.1_g000002 Rmu_sc0041808.1_g000001 Rmu_ssc0000012.1_g000001
rosa_roxburghii Rroxscaffold_3G00226370 Rroxscaffold_3G00226860 Rroxscaffold_3G00226900 Rroxscaffold_3G00226930 Rroxscaffold_3G00226940 Rroxscaffold_3G00226970 Rroxscaffold_3G00226980 Rroxscaffold_3G00231530 Rroxscaffold_3G00237090 Rroxscaffold_3G00250760 Rroxscaffold_3G00250800
rosa_rugosa Rorug04G0082300 Rorug07G0101800 Rorug07G0102000 Rorug07G0102100 Rorug07G0221200 Rorug07G0245700 Rorug07G0245700 Rorug07G0245700 Rorug07G0263900 Rorug07G0264000 Rorug07G0264000 Rorug07G0264500 Rorug07G0282900 Rorug07G0282900 Rorug07G0283100 Rorug07G0283200.1 Rorug07G0283300 Rorug07G0283900 Rorug07G0284000 Rorug07G0284100 Rorug07G0284300 Rorug07G0284400 Rorug07G0284500 Rorug07G0285000 Rorug07G0285200 Rorug07G0285300 Rorug07G0285500 Rorug07G0286800 Rorug07G0286900 Rorug07G0287100 Rorug07G0287200
rosa_samantha Rh7AG236100 Rh7AG236200 Rh7AG236300 Rh7AG440000 Rh7AG440100 Rh7BG411900 Rh7BG412000 Rh7BG412600 Rh7CG251300 Rh7CG417700 Rh7CG460100 Rh7DG242100 Rh7DG242200 Rh7DG242300 Rh7DG429300
rosa_wichuraiana Rw0G005070 Rw0G010780 Rw0G012530 Rw7G020110 Rw7G020160 Rw7G020170 Rw7G033210 Rw7G033230 Rw7G033250 Rw7G034540 Rw7G035150 Rw7G036190 Rw7G036210 Rw7G036260 Rw7G036270 Rw7G036290 Rw7G036300 Rw7G036310 Rw7G036350 Rw7G036360 Rw7G036440 Rw7G036510 Rw7G036530 Rw7G036570 Rw7G036590 Rw7G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 753
AccI GTMKAC 1 cut(s) 316
AccII CGCG 2 cut(s) 91, 119
AciI CCGC 4 cut(s) 254, 535, 738, 1846
AclWI GGATC 5 cut(s) 230, 341, 685, 1277, 1290
AcoI YGGCCR 2 cut(s) 505, 612
AcsI RAATTY 7 cut(s) 496, 702, 759, 783, 920, 1700, 2141
AcuI CTGAAG 2 cut(s) 58, 1632
AfaI GTAC 3 cut(s) 939, 1669, 1863
AfiI CCNNNNNNNGG 3 cut(s) 1154, 2021, 2144
AflIII ACRYGT 3 cut(s) 60, 319, 1473
AhdI GACNNNNNGTC 1 cut(s) 2121
AhlI ACTAGT 1 cut(s) 1828
AjiI CACGTC 1 cut(s) 61
AjnI CCWGG 2 cut(s) 141, 1012
AjuI GAANNNNNNNTTGG 2 cut(s) 985, 1017
Alw21I GWGCWC 2 cut(s) 621, 1649
Alw26I GTCTC 2 cut(s) 798, 1268
AlwI GGATC 5 cut(s) 230, 341, 685, 1277, 1290
AoxI GGCC 4 cut(s) 6, 505, 612, 1145
ApoI RAATTY 7 cut(s) 496, 702, 759, 783, 920, 1700, 2141
Asp700I GAANNNNTTC 1 cut(s) 390
AspLEI GCGC 2 cut(s) 93, 1773
AspS9I GGNCC 4 cut(s) 7, 970, 1010, 1957
AsuC2I CCSGG 2 cut(s) 134, 203
AsuHPI GGTGA 5 cut(s) 295, 779, 905, 1932, 2003
AsuII TTCGAA 1 cut(s) 517
AvaII GGWCC 3 cut(s) 970, 1010, 1957
BamHI GGATCC 1 cut(s) 1282
BanII GRGCYC 1 cut(s) 1649
BauI CACGAG 1 cut(s) 1038
BbsI GAAGAC 3 cut(s) 90, 165, 229
Bbv12I GWGCWC 2 cut(s) 621, 1649
BbvCI CCTCAGC 1 cut(s) 1562
BceAI ACGGC 1 cut(s) 21
BciT130I CCWGG 2 cut(s) 143, 1014
BciVI GTATCC 2 cut(s) 1445, 2197
BcnI CCSGG 2 cut(s) 134, 203
BcoDI GTCTC 2 cut(s) 798, 1268
BcuI ACTAGT 1 cut(s) 1828
BfaI CTAG 7 cut(s) 167, 827, 1545, 1727, 1829, 1995, 2278
BfuI GTATCC 2 cut(s) 1445, 2197
BglII AGATCT 1 cut(s) 1963
BisI GCNGC 1 cut(s) 738
BlsI GCNGC 1 cut(s) 739
Bme1390I CCNGG 4 cut(s) 134, 143, 203, 1014
Bme18I GGWCC 3 cut(s) 970, 1010, 1957
BmeRI GACNNNNNGTC 1 cut(s) 2121
BmgBI CACGTC 1 cut(s) 61
BmgT120I GGNCC 4 cut(s) 7, 970, 1010, 1957
BmiI GGNNCC 4 cut(s) 971, 1284, 1879, 1959
BmrFI CCNGG 4 cut(s) 134, 143, 203, 1014
BmrI ACTGGG 3 cut(s) 320, 1530, 1876
BmsI GCATC 1 cut(s) 1439
BmuI ACTGGG 3 cut(s) 320, 1530, 1876
BpiI GAAGAC 3 cut(s) 90, 165, 229
BplI GAGNNNNNCTC 2 cut(s) 463, 495
BpmI CTGGAG 3 cut(s) 1292, 1530, 1691
Bpu10I CCTNAGC 1 cut(s) 1562
Bpu14I TTCGAA 1 cut(s) 517
BpuEI CTTGAG 1 cut(s) 88
BpuMI CCSGG 2 cut(s) 134, 203
BsaAI YACGTR 2 cut(s) 650, 1720
BsaBI GATNNNNATC 1 cut(s) 227
BsaJI CCNNGG 3 cut(s) 94, 133, 1324
Bsc4I CCNNNNNNNGG 3 cut(s) 1154, 2021, 2144
Bse1I ACTGG 6 cut(s) 315, 1275, 1536, 1863, 1882, 2187
Bse8I GATNNNNATC 1 cut(s) 227
BseBI CCWGG 2 cut(s) 143, 1014
BseDI CCNNGG 3 cut(s) 94, 133, 1324
BseGI GGATG 7 cut(s) 26, 160, 717, 725, 1072, 1388, 1540
BseJI GATNNNNATC 1 cut(s) 227
BseLI CCNNNNNNNGG 3 cut(s) 1154, 2021, 2144
BseMII CTCAG 3 cut(s) 1185, 1553, 1927
BseNI ACTGG 6 cut(s) 315, 1275, 1536, 1863, 1882, 2187
BseRI GAGGAG 3 cut(s) 10, 22, 581
Bsh1236I CGCG 2 cut(s) 91, 119
BshFI GGCC 4 cut(s) 8, 507, 614, 1147
BsiHKAI GWGCWC 2 cut(s) 621, 1649
BsiSI CCGG 3 cut(s) 133, 202, 504
BslFI GGGAC 2 cut(s) 983, 1943
BslI CCNNNNNNNGG 3 cut(s) 1154, 2021, 2144
BsmAI GTCTC 2 cut(s) 798, 1268
BsmBI CGTCTC 1 cut(s) 798
BsmFI GGGAC 2 cut(s) 983, 1943
BsmI GAATGC 1 cut(s) 642
BsnI GGCC 4 cut(s) 8, 507, 614, 1147
Bsp119I TTCGAA 1 cut(s) 517
Bsp1286I GDGCHC 2 cut(s) 621, 1649
Bsp143I GATC 6 cut(s) 163, 222, 346, 677, 1282, 1963
Bsp19I CCATGG 1 cut(s) 94
BspACI CCGC 4 cut(s) 254, 535, 738, 1846
BspANI GGCC 4 cut(s) 8, 507, 614, 1147
BspCNI CTCAG 3 cut(s) 1184, 1554, 1926
BspFNI CGCG 2 cut(s) 91, 119
BspHI TCATGA 1 cut(s) 1905
BspLI GGNNCC 4 cut(s) 971, 1284, 1879, 1959
BspPI GGATC 5 cut(s) 230, 341, 685, 1277, 1290
BspT104I TTCGAA 1 cut(s) 517
BsrI ACTGG 6 cut(s) 315, 1275, 1536, 1863, 1882, 2187
BssECI CCNNGG 3 cut(s) 94, 133, 1324
BssMI GATC 6 cut(s) 163, 222, 346, 677, 1282, 1963
BssSI CACGAG 1 cut(s) 1038
BssT1I CCWWGG 2 cut(s) 94, 1324
Bst2BI CACGAG 1 cut(s) 1038
Bst2UI CCWGG 2 cut(s) 143, 1014
Bst4CI ACNGT 5 cut(s) 198, 1193, 1672, 2063, 2069
Bst6I CTCTTC 4 cut(s) 28, 207, 1248, 2085
BstBAI YACGTR 2 cut(s) 650, 1720
BstBI TTCGAA 1 cut(s) 517
BstC8I GCNNGC 1 cut(s) 1128
BstDEI CTNAG 5 cut(s) 1171, 1562, 1913, 2054, 2072
BstDSI CCRYGG 1 cut(s) 94
BstENI CCTNNNNNAGG 1 cut(s) 1152
BstF5I GGATG 7 cut(s) 26, 160, 717, 725, 1072, 1388, 1540
BstFNI CGCG 2 cut(s) 91, 119
BstHHI GCGC 2 cut(s) 93, 1773
BstKTI GATC 6 cut(s) 166, 225, 349, 680, 1285, 1966
BstMAI GTCTC 2 cut(s) 798, 1268
BstMBI GATC 6 cut(s) 163, 222, 346, 677, 1282, 1963
BstMWI GCNNNNNNNGC 5 cut(s) 14, 78, 105, 743, 1449
BstNI CCWGG 2 cut(s) 143, 1014
BstNSI RCATGY 3 cut(s) 323, 359, 1130
BstSCI CCNGG 4 cut(s) 132, 141, 201, 1012
BstSNI TACGTA 1 cut(s) 650
BstUI CGCG 2 cut(s) 91, 119
BstV2I GAAGAC 3 cut(s) 90, 165, 229
BstX2I RGATCY 3 cut(s) 222, 1282, 1963
BstXI CCANNNNNNTGG 1 cut(s) 764
BstYI RGATCY 3 cut(s) 222, 1282, 1963
BsuI GTATCC 2 cut(s) 1445, 2197
BsuRI GGCC 4 cut(s) 8, 507, 614, 1147
BtgI CCRYGG 1 cut(s) 94
BtrI CACGTC 1 cut(s) 61
BtsCI GGATG 7 cut(s) 26, 160, 717, 725, 1072, 1388, 1540
BtsIMutI CAGTG 3 cut(s) 82, 473, 2180
Cac8I GCNNGC 1 cut(s) 1128
CciI TCATGA 1 cut(s) 1905
CfoI GCGC 2 cut(s) 93, 1773
Cfr13I GGNCC 4 cut(s) 7, 970, 1010, 1957
CseI GACGC 2 cut(s) 815, 863
Csp6I GTAC 3 cut(s) 938, 1668, 1862
CviQI GTAC 3 cut(s) 938, 1668, 1862
DdeI CTNAG 5 cut(s) 1171, 1562, 1913, 2054, 2072
DpnI GATC 6 cut(s) 165, 224, 348, 679, 1284, 1965
DpnII GATC 6 cut(s) 163, 222, 346, 677, 1282, 1963
DraI TTTAAA 1 cut(s) 126
DriI GACNNNNNGTC 1 cut(s) 2121
EaeI YGGCCR 2 cut(s) 505, 612
Eam1104I CTCTTC 4 cut(s) 28, 207, 1248, 2085
Eam1105I GACNNNNNGTC 1 cut(s) 2121
EarI CTCTTC 4 cut(s) 28, 207, 1248, 2085
Ecl136II GAGCTC 1 cut(s) 1647
Eco105I TACGTA 1 cut(s) 650
Eco130I CCWWGG 2 cut(s) 94, 1324
Eco24I GRGCYC 1 cut(s) 1649
Eco32I GATATC 1 cut(s) 1160
Eco47I GGWCC 3 cut(s) 970, 1010, 1957
Eco53kI GAGCTC 1 cut(s) 1647
Eco57I CTGAAG 2 cut(s) 58, 1632
EcoICRI GAGCTC 1 cut(s) 1647
EcoNI CCTNNNNNAGG 1 cut(s) 1152
EcoO109I RGGNCCY 1 cut(s) 1957
EcoRII CCWGG 2 cut(s) 141, 1012
EcoRV GATATC 1 cut(s) 1160
EcoT14I CCWWGG 2 cut(s) 94, 1324
EcoT22I ATGCAT 1 cut(s) 1488
EcoT38I GRGCYC 1 cut(s) 1649
ErhI CCWWGG 2 cut(s) 94, 1324
Esp3I CGTCTC 1 cut(s) 798
FalI AAGNNNNNCTT 2 cut(s) 1146, 1178
FaqI GGGAC 2 cut(s) 983, 1943
FauI CCCGC 1 cut(s) 528
FblI GTMKAC 1 cut(s) 316
Fnu4HI GCNGC 1 cut(s) 738
FokI GGATG 7 cut(s) 13, 167, 724, 732, 1079, 1395, 1527
FriOI GRGCYC 1 cut(s) 1649
Fsp4HI GCNGC 1 cut(s) 738
FspBI CTAG 7 cut(s) 167, 827, 1545, 1727, 1829, 1995, 2278
GlaI GCGC 2 cut(s) 92, 1772
GluI GCNGC 1 cut(s) 738
GsuI CTGGAG 3 cut(s) 1292, 1530, 1691
HaeIII GGCC 4 cut(s) 8, 507, 614, 1147
HapII CCGG 3 cut(s) 133, 202, 504
HgaI GACGC 2 cut(s) 815, 863
HhaI GCGC 2 cut(s) 93, 1773
Hin6I GCGC 2 cut(s) 91, 1771
HinP1I GCGC 2 cut(s) 91, 1771
HincII GTYRAC 2 cut(s) 317, 1268
HindII GTYRAC 2 cut(s) 317, 1268
HindIII AAGCTT 2 cut(s) 1104, 1318
HpaII CCGG 3 cut(s) 133, 202, 504
HphI GGTGA 5 cut(s) 295, 779, 905, 1932, 2003
Hpy166II GTNNAC 4 cut(s) 317, 818, 1268, 2050
Hpy8I GTNNAC 4 cut(s) 317, 818, 1268, 2050
Hpy99I CGWCG 2 cut(s) 62, 1403
HpyAV CCTTC 6 cut(s) 360, 890, 927, 1148, 1867, 2026
HpyCH4III ACNGT 5 cut(s) 198, 1193, 1672, 2063, 2069
HpyCH4IV ACGT 8 cut(s) 60, 342, 439, 649, 957, 1398, 1473, 1719
HpyCH4V TGCA 6 cut(s) 300, 838, 983, 1486, 1642, 2155
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 78, 105, 743, 1449
HpyF3I CTNAG 5 cut(s) 1171, 1562, 1913, 2054, 2072
HpySE526I ACGT 8 cut(s) 60, 342, 439, 649, 957, 1398, 1473, 1719
HspAI GCGC 2 cut(s) 91, 1771
Kzo9I GATC 6 cut(s) 163, 222, 346, 677, 1282, 1963
LweI GCATC 1 cut(s) 1439
MaeI CTAG 7 cut(s) 167, 827, 1545, 1727, 1829, 1995, 2278
MaeII ACGT 8 cut(s) 60, 342, 439, 649, 957, 1398, 1473, 1719
MaeIII GTNAC 3 cut(s) 1456, 1579, 2063
MalI GATC 6 cut(s) 165, 224, 348, 679, 1284, 1965
MboI GATC 6 cut(s) 163, 222, 346, 677, 1282, 1963
MfeI CAATTG 1 cut(s) 624
MflI RGATCY 3 cut(s) 222, 1282, 1963
MhlI GDGCHC 2 cut(s) 621, 1649
MlyI GAGTC 3 cut(s) 47, 224, 2110
MmeI TCCRAC 1 cut(s) 679
Mph1103I ATGCAT 1 cut(s) 1488
MroXI GAANNNNTTC 1 cut(s) 390
MseI TTAA 9 cut(s) 125, 273, 1215, 1238, 1760, 1931, 1968, 2031, 2127
MspI CCGG 3 cut(s) 133, 202, 504
MspR9I CCNGG 4 cut(s) 134, 143, 203, 1014
MunI CAATTG 1 cut(s) 624
Mva1269I GAATGC 1 cut(s) 642
MvaI CCWGG 2 cut(s) 143, 1014
MvnI CGCG 2 cut(s) 91, 119
MwoI GCNNNNNNNGC 5 cut(s) 14, 78, 105, 743, 1449
NciI CCSGG 2 cut(s) 134, 203
NcoI CCATGG 1 cut(s) 94
NdeII GATC 6 cut(s) 163, 222, 346, 677, 1282, 1963
NlaIV GGNNCC 4 cut(s) 971, 1284, 1879, 1959
NmeAIII GCCGAG 1 cut(s) 640
NmuCI GTSAC 1 cut(s) 1579
NsiI ATGCAT 1 cut(s) 1488
NspI RCATGY 3 cut(s) 323, 359, 1130
NspV TTCGAA 1 cut(s) 517
PaeI GCATGC 1 cut(s) 1130
PagI TCATGA 1 cut(s) 1905
PciI ACATGT 1 cut(s) 319
PcsI WCGNNNNNNNCGW 1 cut(s) 646
PctI GAATGC 1 cut(s) 642
PdmI GAANNNNTTC 1 cut(s) 390
PfeI GAWTC 9 cut(s) 138, 257, 1495, 1567, 1607, 1909, 1937, 2008, 2177
PfoI TCCNGGA 1 cut(s) 1012
PkrI GCNGC 1 cut(s) 739
PleI GAGTC 3 cut(s) 46, 223, 2110
PpsI GAGTC 3 cut(s) 46, 223, 2110
Ppu21I YACGTR 2 cut(s) 650, 1720
PpuMI RGGWCCY 1 cut(s) 1957
PscI ACATGT 1 cut(s) 319
PsiI TTATAA 1 cut(s) 753
Psp124BI GAGCTC 1 cut(s) 1649
Psp5II RGGWCCY 1 cut(s) 1957
Psp6I CCWGG 2 cut(s) 141, 1012
PspGI CCWGG 2 cut(s) 141, 1012
PspN4I GGNNCC 4 cut(s) 971, 1284, 1879, 1959
PspPI GGNCC 4 cut(s) 7, 970, 1010, 1957
PspPPI RGGWCCY 1 cut(s) 1957
PsuI RGATCY 3 cut(s) 222, 1282, 1963
RsaI GTAC 3 cut(s) 939, 1669, 1863
RsaNI GTAC 3 cut(s) 938, 1668, 1862
SacI GAGCTC 1 cut(s) 1649
SalI GTCGAC 1 cut(s) 315
SaqAI TTAA 9 cut(s) 125, 273, 1215, 1238, 1760, 1931, 1968, 2031, 2127
SatI GCNGC 1 cut(s) 738
Sau3AI GATC 6 cut(s) 163, 222, 346, 677, 1282, 1963
Sau96I GGNCC 4 cut(s) 7, 970, 1010, 1957
SchI GAGTC 3 cut(s) 47, 224, 2110
ScrFI CCNGG 4 cut(s) 134, 143, 203, 1014
SduI GDGCHC 2 cut(s) 621, 1649
SfaNI GCATC 1 cut(s) 1439
SfuI TTCGAA 1 cut(s) 517
SinI GGWCC 3 cut(s) 970, 1010, 1957
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
SnaBI TACGTA 1 cut(s) 650
SpeI ACTAGT 1 cut(s) 1828
SphI GCATGC 1 cut(s) 1130
SsiI CCGC 4 cut(s) 254, 535, 738, 1846
SspI AATATT 1 cut(s) 333
SspMI CTAG 7 cut(s) 167, 827, 1545, 1727, 1829, 1995, 2278
SstI GAGCTC 1 cut(s) 1649
StyD4I CCNGG 4 cut(s) 132, 141, 201, 1012
StyI CCWWGG 2 cut(s) 94, 1324
TaaI ACNGT 5 cut(s) 198, 1193, 1672, 2063, 2069
TaiI ACGT 8 cut(s) 63, 345, 442, 652, 960, 1401, 1476, 1722
TaqI TCGA 7 cut(s) 210, 218, 260, 316, 517, 1498, 1649
TatI WGTACW 1 cut(s) 1667
TauI GCSGC 1 cut(s) 740
TfiI GAWTC 9 cut(s) 138, 257, 1495, 1567, 1607, 1909, 1937, 2008, 2177
Tru1I TTAA 9 cut(s) 125, 273, 1215, 1238, 1760, 1931, 1968, 2031, 2127
Tru9I TTAA 9 cut(s) 125, 273, 1215, 1238, 1760, 1931, 1968, 2031, 2127
TscAI CASTG 3 cut(s) 82, 473, 2187
TseFI GTSAC 1 cut(s) 1579
Tsp45I GTSAC 1 cut(s) 1579
TspGWI ACGGA 2 cut(s) 387, 1349
TspRI CASTG 3 cut(s) 82, 473, 2187
VpaK11BI GGWCC 3 cut(s) 970, 1010, 1957
XagI CCTNNNNNAGG 1 cut(s) 1152
XapI RAATTY 7 cut(s) 496, 702, 759, 783, 920, 1700, 2141
XbaI TCTAGA 1 cut(s) 166
XceI RCATGY 3 cut(s) 323, 359, 1130
XmiI GTMKAC 1 cut(s) 316
XmnI GAANNNNTTC 1 cut(s) 390
XspI CTAG 7 cut(s) 167, 827, 1545, 1727, 1829, 1995, 2278
Zsp2I ATGCAT 1 cut(s) 1488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.