pycom12g22730

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
23555838 .. 23556475
638 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g22730.3

Sequence Viewer

Length: 495 bp
ATGCCAGATTTTTCAGGCATGTCGATAACGGTGATTCTCTTTTCCCCGAAACTCTTTAAGTTTCCAGGCTTGGATAGTGCGTTAAACTCGGGACTCACACTTTGTATGATAACACACAACAATGTCACAGATTTCCTTCTTAAGGATAGCACGATACAGGGATGGACAGGAGGTGGAACCATGACTCTTGTAGGAAGACAAATTCCCACTTGGTTCAATCATGTCAACGAGGGTACCCAAGTCTCTTTTGAAGTGCCTAAGGAAATTGGTTGTAATACAAAAGCATTGGCTGTGTGCCTGGCTTCTGTTCCTCATGATTACGTCAGCTCATGTTATATTTATGTTATTAATCACACCAAGGGTACTAGTTTTTATGTCGAAATAGGAGATGTTTTTACCTTTGAAGAGATCCTTTGGTTGAGAAATTTATCGTTGTCGGAAACTAAGTTCAATTTGGAAGAAAGCGATTTGGTCCATTATGCGACAAACTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

165

Amino Acids

18.25

Weight (kDa)

5.04

Isoelectric Point (pI)

46.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36930 AT5G36930 AT5G36930 AT5G36930
fragaria_vesca FvH4_3g45361 FvH4_3g45380 FvH4_5g21061 FvH4_5g21062 FvH4_5g21063 FvH4_5g32050 FvH4_5g32970 FvH4_5g32990 FvH4_5g34190 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34211 FvH4_5g34240 FvH4_5g34250
malus_domestica MD00G1011700.v1.1 MD00G1026100.v1.1 MD00G1026500.v1.1 MD00G1027000.v1.1 MD00G1027100.v1.1 MD00G1027700.v1.1 MD00G1027800.v1.1 MD00G1028000.v1.1 MD00G1220000.v1.1 MD02G1024400.v1.1 MD02G1024800.v1.1 MD02G1026000.v1.1 MD02G1026100.v1.1 MD02G1031800.v1.1 MD02G1038500.v1.1 MD02G1038700.v1.1 MD02G1039200.v1.1 MD02G1040600.v1.1 MD02G1040900.v1.1 MD02G1041200.v1.1 MD02G1041300.v1.1 MD02G1041700.v1.1 MD02G1042000.v1.1 MD02G1043800.v1.1 MD02G1043900.v1.1 MD02G1044300.v1.1 MD02G1045200.v1.1 MD02G1045300.v1.1 MD02G1051200.v1.1 MD02G1052200.v1.1 MD02G1052800.v1.1 MD02G1053100.v1.1 MD02G1053600.v1.1 MD02G1055500.v1.1 MD02G1063300.v1.1 MD02G1063400.v1.1 MD02G1063800.v1.1 MD02G1306500.v1.1 MD02G1306600.v1.1 MD02G1306700.v1.1 MD02G1306900.v1.1 MD02G1307200.v1.1 MD04G1011700.v1.1 MD05G1315400.v1.1 MD05G1316000.v1.1 MD05G1316700.v1.1 MD05G1317000.v1.1 MD05G1317300.v1.1 MD05G1317600.v1.1 MD05G1317700.v1.1 MD07G1102800.v1.1 MD07G1238200.v1.1 MD08G1175900.v1.1 MD08G1203600.v1.1 MD09G1024200.v1.1 MD09G1039600.v1.1 MD09G1044800.v1.1 MD09G1045100.v1.1 MD10G1038700.v1.1 MD10G1039000.v1.1 MD10G1039200.v1.1 MD10G1040000.v1.1 MD10G1040200.v1.1 MD10G1040600.v1.1 MD10G1040800.v1.1 MD10G1297300.v1.1 MD12G1247500.v1.1 MD12G1247900.v1.1 MD12G1248300.v1.1 MD12G1248800.v1.1 MD15G1103700.v1.1 MD15G1103800.v1.1 MD15G1104000.v1.1 MD15G1179600.v1.1 MD15G1182500.v1.1 MD16G1068200.v1.1 MD16G1068300.v1.1 MD17G1024600.v1.1 MD17G1024700.v1.1 MD17G1025000.v1.1 MD17G1025900.v1.1
prunus_persica Prupe.1G539800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G557100_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557300_v2.0.a1
pyrus_communis pycom02g02080 pycom02g02090 pycom02g02110 pycom02g03220 pycom02g03260 pycom02g03370 pycom02g03390 pycom02g03410 pycom02g03420 pycom02g03450 pycom02g03500 pycom02g03730 pycom02g03770 pycom02g04400 pycom02g04410 pycom02g04430 pycom02g04450 pycom02g04460 pycom02g04490 pycom02g05200 pycom02g25710 pycom02g25750 pycom02g25790 pycom02g25810 pycom02g25830 pycom04g00920 pycom04g00930 pycom04g00940 pycom05g29300 pycom05g29310 pycom05g29380 pycom05g29410 pycom07g06310 pycom07g21420 pycom08g15070 pycom08g17540 pycom08g17560 pycom08g17570 pycom10g02670 pycom10g02680 pycom10g02700 pycom10g02770 pycom10g02790 pycom10g02800 pycom10g02810 pycom10g25020 pycom10g25030 pycom10g25050 pycom10g25080 pycom111g01990 pycom111g02000 pycom111g02030 pycom111g02040 pycom111g02050 pycom111g02060 pycom12g22710 pycom12g22720 pycom12g22730 pycom12g22740 pycom12g22750 pycom12g22770 pycom12g22780 pycom12g22790 pycom12g22800 pycom12g22810 pycom12g22830 pycom12g22840 pycom12g22860 pycom15g09440 pycom15g09480 pycom15g16120 pycom15g32380 pycom16g05970 pycom17g02100
rosa_chinensis RchiOBHm_Chr2g0144661 RchiOBHm_Chr4g0407491 RchiOBHm_Chr4g0407501 RchiOBHm_Chr4g0412381 RchiOBHm_Chr7g0208191 RchiOBHm_Chr7g0208201 RchiOBHm_Chr7g0208211 RchiOBHm_Chr7g0208221 RchiOBHm_Chr7g0228071 RchiOBHm_Chr7g0228121 RchiOBHm_Chr7g0230971 RchiOBHm_Chr7g0230981 RchiOBHm_Chr7g0233901 RchiOBHm_Chr7g0233951 RchiOBHm_Chr7g0233961 RchiOBHm_Chr7g0233991 RchiOBHm_Chr7g0234021 RchiOBHm_Chr7g0234151 RchiOBHm_Chr7g0234161 RchiOBHm_Chr7g0234241 RchiOBHm_Chr7g0234501 RchiOBHm_Chr7g0234641 RchiOBHm_Chr7g0234771 RchiOBHm_Chr7g0234781 RchiOBHm_Chr7g0234991 RchiOBHm_Chr7g0241291 RchiOBHm_Chr7g0241301
rosa_laevigata RLG00000001186 RLG00000001187 RLG00000001212 RLG00000001226 RLG00000001233 RLG00000001590 RLG00000003242 RLG00000003243 RLG00000003249 RLG00000008688 RLG00000008690
rosa_multiflora Rmu_co7966574.1_g000001 Rmu_co8120830.1_g000001 Rmu_co8142226.1_g000001 Rmu_co8293083.1_g000001 Rmu_co8351227.1_g000001 Rmu_co8380159.1_g000001 Rmu_co8456505.1_g000001 Rmu_sc0000676.1_g000025 Rmu_sc0000706.1_g000018 Rmu_sc0000706.1_g000040 Rmu_sc0000740.1_g000029 Rmu_sc0000740.1_g000032 Rmu_sc0000740.1_g000037 Rmu_sc0000740.1_g000040 Rmu_sc0000762.1_g000003 Rmu_sc0000762.1_g000019 Rmu_sc0000762.1_g000034 Rmu_sc0000762.1_g000069 Rmu_sc0000892.1_g000001 Rmu_sc0000945.1_g000040 Rmu_sc0001913.1_g000037 Rmu_sc0001913.1_g000041 Rmu_sc0001913.1_g000049 Rmu_sc0002775.1_g000017 Rmu_sc0002775.1_g000018 Rmu_sc0002775.1_g000020 Rmu_sc0002775.1_g000021 Rmu_sc0002775.1_g000022 Rmu_sc0002775.1_g000025 Rmu_sc0002775.1_g000026 Rmu_sc0002775.1_g000028 Rmu_sc0002775.1_g000030 Rmu_sc0004858.1_g000002 Rmu_sc0004864.1_g000022 Rmu_sc0005038.1_g000023 Rmu_sc0005840.1_g000014 Rmu_sc0006724.1_g000003 Rmu_sc0006824.1_g000005 Rmu_sc0007869.1_g000003 Rmu_sc0007869.1_g000005 Rmu_sc0007869.1_g000008 Rmu_sc0008646.1_g000007 Rmu_sc0009637.1_g000009 Rmu_sc0010500.1_g000002 Rmu_sc0010500.1_g000012 Rmu_sc0012403.1_g000025 Rmu_sc0013768.1_g000025 Rmu_sc0015625.1_g000001 Rmu_sc0019715.1_g000001 Rmu_sc0021133.1_g000002 Rmu_sc0021904.1_g000001 Rmu_sc0021904.1_g000003 Rmu_sc0021904.1_g000004 Rmu_sc0022054.1_g000001 Rmu_sc0026025.1_g000001 Rmu_sc0036828.1_g000002 Rmu_sc0041808.1_g000001 Rmu_ssc0000012.1_g000001
rosa_roxburghii Rroxscaffold_3G00226370 Rroxscaffold_3G00226860 Rroxscaffold_3G00226900 Rroxscaffold_3G00226930 Rroxscaffold_3G00226940 Rroxscaffold_3G00226970 Rroxscaffold_3G00226980 Rroxscaffold_3G00231530 Rroxscaffold_3G00237090 Rroxscaffold_3G00250760 Rroxscaffold_3G00250800
rosa_rugosa Rorug04G0082300 Rorug07G0101800 Rorug07G0102000 Rorug07G0102100 Rorug07G0221200 Rorug07G0245700 Rorug07G0245700 Rorug07G0245700 Rorug07G0263900 Rorug07G0264000 Rorug07G0264000 Rorug07G0264500 Rorug07G0282900 Rorug07G0282900 Rorug07G0283100 Rorug07G0283200.1 Rorug07G0283300 Rorug07G0283900 Rorug07G0284000 Rorug07G0284100 Rorug07G0284300 Rorug07G0284400 Rorug07G0284500 Rorug07G0285000 Rorug07G0285200 Rorug07G0285300 Rorug07G0285500 Rorug07G0286800 Rorug07G0286900 Rorug07G0287100 Rorug07G0287200
rosa_samantha Rh7AG236100 Rh7AG236200 Rh7AG236300 Rh7AG440000 Rh7AG440100 Rh7BG411900 Rh7BG412000 Rh7BG412600 Rh7CG251300 Rh7CG417700 Rh7CG460100 Rh7DG242100 Rh7DG242200 Rh7DG242300 Rh7DG429300
rosa_wichuraiana Rw0G005070 Rw0G010780 Rw0G012530 Rw7G020110 Rw7G020160 Rw7G020170 Rw7G033210 Rw7G033230 Rw7G033250 Rw7G034540 Rw7G035150 Rw7G036190 Rw7G036210 Rw7G036260 Rw7G036270 Rw7G036290 Rw7G036300 Rw7G036310 Rw7G036350 Rw7G036360 Rw7G036440 Rw7G036510 Rw7G036530 Rw7G036570 Rw7G036590 Rw7G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 233
AccB1I GGYRCC 1 cut(s) 233
AclWI GGATC 1 cut(s) 403
AcsI RAATTY 2 cut(s) 201, 424
AfaI GTAC 2 cut(s) 235, 364
AfiI CCNNNNNNNGG 1 cut(s) 142
AflII CTTAAG 1 cut(s) 140
AgsI TTSAA 4 cut(s) 217, 251, 404, 451
AhlI ACTAGT 1 cut(s) 365
AjnI CCWGG 2 cut(s) 64, 297
AloI GAACNNNNNNTCC 2 cut(s) 431, 463
AluBI AGCT 1 cut(s) 327
AluI AGCT 1 cut(s) 327
Alw26I GTCTC 1 cut(s) 247
AlwI GGATC 1 cut(s) 403
Ama87I CYCGRG 1 cut(s) 88
ApoI RAATTY 2 cut(s) 201, 424
ArsI GACNNNNNNTTYG 2 cut(s) 84, 116
AseI ATTAAT 1 cut(s) 348
Asp718I GGTACC 1 cut(s) 233
AspS9I GGNCC 1 cut(s) 472
AsuHPI GGTGA 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 88
AvaII GGWCC 1 cut(s) 472
AxyI CCTNAGG 1 cut(s) 258
BaeI ACNNNNGTAYC 4 cut(s) 217, 225, 250, 258
BanI GGYRCC 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 202
BccI CCATC 1 cut(s) 156
BciT130I CCWGG 2 cut(s) 66, 299
BcoDI GTCTC 1 cut(s) 247
BcuI ACTAGT 1 cut(s) 365
BfaI CTAG 1 cut(s) 366
BfrI CTTAAG 1 cut(s) 140
Bme1390I CCNGG 2 cut(s) 66, 299
Bme18I GGWCC 1 cut(s) 472
BmeT110I CYCGRG 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 472
BmiI GGNNCC 2 cut(s) 178, 235
BmrFI CCNGG 2 cut(s) 66, 299
BpiI GAAGAC 1 cut(s) 202
BsaJI CCNNGG 1 cut(s) 357
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse21I CCTNAGG 1 cut(s) 258
BseBI CCWGG 2 cut(s) 66, 299
BseDI CCNNGG 1 cut(s) 357
BseGI GGATG 1 cut(s) 167
BseLI CCNNNNNNNGG 1 cut(s) 142
BshNI GGYRCC 1 cut(s) 233
BsiHKCI CYCGRG 1 cut(s) 88
BslFI GGGAC 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 1 cut(s) 247
BsmFI GGGAC 1 cut(s) 105
BsoBI CYCGRG 1 cut(s) 88
Bsp143I GATC 1 cut(s) 408
BspHI TCATGA 1 cut(s) 313
BspLI GGNNCC 2 cut(s) 178, 235
BspPI GGATC 1 cut(s) 403
BspT107I GGYRCC 1 cut(s) 233
BspTI CTTAAG 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 357
BssMI GATC 1 cut(s) 408
BssT1I CCWWGG 1 cut(s) 357
Bst2UI CCWGG 2 cut(s) 66, 299
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 399
BstAFI CTTAAG 1 cut(s) 140
BstDEI CTNAG 2 cut(s) 258, 444
BstENI CCTNNNNNAGG 1 cut(s) 140
BstF5I GGATG 1 cut(s) 167
BstKTI GATC 1 cut(s) 411
BstMAI GTCTC 1 cut(s) 247
BstMBI GATC 1 cut(s) 408
BstNI CCWGG 2 cut(s) 66, 299
BstNSI RCATGY 1 cut(s) 22
BstSCI CCNGG 2 cut(s) 64, 297
BstV2I GAAGAC 1 cut(s) 202
BstX2I RGATCY 1 cut(s) 408
BstYI RGATCY 1 cut(s) 408
Bsu36I CCTNAGG 1 cut(s) 258
BtsCI GGATG 1 cut(s) 167
CciI TCATGA 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 472
Csp6I GTAC 2 cut(s) 234, 363
CviAII CATG 5 cut(s) 19, 181, 221, 314, 330
CviJI RGCY 4 cut(s) 69, 290, 302, 327
CviKI_1 RGCY 4 cut(s) 69, 290, 302, 327
CviQI GTAC 2 cut(s) 234, 363
DdeI CTNAG 2 cut(s) 258, 444
DpnI GATC 1 cut(s) 410
DpnII GATC 1 cut(s) 408
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Eco130I CCWWGG 1 cut(s) 357
Eco47I GGWCC 1 cut(s) 472
Eco81I CCTNAGG 1 cut(s) 258
Eco88I CYCGRG 1 cut(s) 88
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoRII CCWGG 2 cut(s) 64, 297
EcoT14I CCWWGG 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 357
FaeI CATG 5 cut(s) 22, 184, 224, 317, 333
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FaqI GGGAC 1 cut(s) 105
FatI CATG 5 cut(s) 18, 180, 220, 313, 329
FokI GGATG 1 cut(s) 174
FspBI CTAG 1 cut(s) 366
Hin1II CATG 5 cut(s) 22, 184, 224, 317, 333
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 3 cut(s) 34, 93, 184
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 1 cut(s) 439
Hpy188III TCNNGA 2 cut(s) 90, 314
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 321
HpyF3I CTNAG 2 cut(s) 258, 444
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 5 cut(s) 22, 184, 224, 317, 333
KpnI GGTACC 1 cut(s) 237
Kzo9I GATC 1 cut(s) 408
LpnPI CCDG 7 cut(s) 18, 51, 78, 143, 153, 284, 311
MaeI CTAG 1 cut(s) 366
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 124
MalI GATC 1 cut(s) 410
MboI GATC 1 cut(s) 408
MboII GAAGA 3 cut(s) 207, 416, 470
MflI RGATCY 1 cut(s) 408
MluCI AATT 4 cut(s) 201, 264, 424, 451
MlyI GAGTC 2 cut(s) 87, 178
MmeI TCCRAC 1 cut(s) 417
MnlI CCTC 3 cut(s) 164, 223, 321
MseI TTAA 4 cut(s) 57, 83, 141, 348
MslI CAYNNNNRTG 1 cut(s) 120
MspCI CTTAAG 1 cut(s) 140
MspR9I CCNGG 2 cut(s) 66, 299
MvaI CCWGG 2 cut(s) 66, 299
NdeII GATC 1 cut(s) 408
NlaIII CATG 5 cut(s) 22, 184, 224, 317, 333
NlaIV GGNNCC 2 cut(s) 178, 235
NmuCI GTSAC 1 cut(s) 124
NspI RCATGY 1 cut(s) 22
PagI TCATGA 1 cut(s) 313
PfeI GAWTC 1 cut(s) 34
PleI GAGTC 2 cut(s) 87, 178
PpsI GAGTC 2 cut(s) 87, 178
PshBI ATTAAT 1 cut(s) 348
Psp6I CCWGG 2 cut(s) 64, 297
PspGI CCWGG 2 cut(s) 64, 297
PspN4I GGNNCC 2 cut(s) 178, 235
PspPI GGNCC 1 cut(s) 472
PsuI RGATCY 1 cut(s) 408
RsaI GTAC 2 cut(s) 235, 364
RsaNI GTAC 2 cut(s) 234, 363
RseI CAYNNNNRTG 1 cut(s) 120
SaqAI TTAA 4 cut(s) 57, 83, 141, 348
Sau3AI GATC 1 cut(s) 408
Sau96I GGNCC 1 cut(s) 472
SchI GAGTC 2 cut(s) 87, 178
ScrFI CCNGG 2 cut(s) 66, 299
SetI ASST 4 cut(s) 175, 324, 329, 401
SinI GGWCC 1 cut(s) 472
SmiMI CAYNNNNRTG 1 cut(s) 120
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
SpeI ACTAGT 1 cut(s) 365
Sse9I AATT 4 cut(s) 201, 264, 424, 451
SspMI CTAG 1 cut(s) 366
StyD4I CCNGG 2 cut(s) 64, 297
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 1 cut(s) 31
TaiI ACGT 1 cut(s) 324
TaqI TCGA 2 cut(s) 23, 378
TasI AATT 4 cut(s) 201, 264, 424, 451
TfiI GAWTC 1 cut(s) 34
Tru1I TTAA 4 cut(s) 57, 83, 141, 348
Tru9I TTAA 4 cut(s) 57, 83, 141, 348
TseFI GTSAC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 124
Vha464I CTTAAG 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 472
VspI ATTAAT 1 cut(s) 348
XagI CCTNNNNNAGG 1 cut(s) 140
XapI RAATTY 2 cut(s) 201, 424
XceI RCATGY 1 cut(s) 22
XspI CTAG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.