TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 26 - 197 | 3.9e-48 | TIR domain |
| TIR_2 | PF13676 | 29 - 126 | 3.6e-17 | TIR domain |
| NB-ARC | PF00931 | 223 - 376 | 4e-23 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 450 - 517 | 1.7e-07 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 650 - 787 | 4.5e-07 | Leucine-rich repeat region |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 318 |
| AccI | GTMKAC | 1 cut(s) | 2489 |
| AccII | CGCG | 4 cut(s) | 248, 275, 627, 2551 |
| AclWI | GGATC | 3 cut(s) | 251, 477, 510 |
| AcoI | YGGCCR | 3 cut(s) | 496, 1216, 2708 |
| AcsI | RAATTY | 7 cut(s) | 635, 690, 1296, 1448, 1672, 1727, 2888 |
| AcuI | CTGAAG | 5 cut(s) | 399, 1419, 2051, 2078, 2225 |
| AfaI | GTAC | 7 cut(s) | 80, 643, 924, 1261, 2154, 2650, 2683 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 193, 448, 784, 1225, 1894, 2425 |
| AflII | CTTAAG | 2 cut(s) | 473, 1100 |
| AflIII | ACRYGT | 1 cut(s) | 168 |
| AjnI | CCWGG | 4 cut(s) | 498, 997, 1567, 2388 |
| Alw21I | GWGCWC | 1 cut(s) | 2438 |
| Alw26I | GTCTC | 3 cut(s) | 1518, 1614, 2447 |
| Alw44I | GTGCAC | 1 cut(s) | 2434 |
| AlwI | GGATC | 3 cut(s) | 251, 477, 510 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2016 |
| Ama87I | CYCGRG | 1 cut(s) | 1994 |
| AoxI | GGCC | 7 cut(s) | 496, 851, 1216, 2004, 2194, 2708, 3042 |
| ApaLI | GTGCAC | 1 cut(s) | 2434 |
| ApeKI | GCWGC | 2 cut(s) | 12, 35 |
| ApoI | RAATTY | 7 cut(s) | 635, 690, 1296, 1448, 1672, 1727, 2888 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 414, 828, 2121 |
| AspLEI | GCGC | 1 cut(s) | 2551 |
| AspS9I | GGNCC | 6 cut(s) | 885, 955, 995, 2005, 2655, 3088 |
| AsuHPI | GGTGA | 4 cut(s) | 569, 799, 2728, 2866 |
| AsuNHI | GCTAGC | 1 cut(s) | 1198 |
| AvaI | CYCGRG | 1 cut(s) | 1994 |
| AvaII | GGWCC | 5 cut(s) | 885, 955, 995, 2655, 3088 |
| AxyI | CCTNAGG | 1 cut(s) | 293 |
| BaeGI | GKGCMC | 1 cut(s) | 2438 |
| BalI | TGGCCA | 2 cut(s) | 498, 2710 |
| BanI | GGYRCC | 1 cut(s) | 318 |
| BbsI | GAAGAC | 5 cut(s) | 42, 250, 444, 1466, 1605 |
| Bbv12I | GWGCWC | 1 cut(s) | 2438 |
| BbvI | GCAGC | 2 cut(s) | 22, 24 |
| BccI | CCATC | 4 cut(s) | 759, 1319, 2153, 2192 |
| BceAI | ACGGC | 3 cut(s) | 866, 1203, 2093 |
| BciT130I | CCWGG | 4 cut(s) | 500, 999, 1569, 2390 |
| BclI | TGATCA | 3 cut(s) | 309, 1339, 2839 |
| BcoDI | GTCTC | 3 cut(s) | 1518, 1614, 2447 |
| BfaI | CTAG | 4 cut(s) | 1199, 1478, 1817, 2156 |
| BfmI | CTRYAG | 4 cut(s) | 483, 516, 1437, 1873 |
| BfrI | CTTAAG | 2 cut(s) | 473, 1100 |
| BglII | AGATCT | 1 cut(s) | 1790 |
| BisI | GCNGC | 9 cut(s) | 13, 33, 36, 39, 706, 1196, 1718, 2365, 2582 |
| BlsI | GCNGC | 9 cut(s) | 14, 34, 37, 40, 707, 1197, 1719, 2366, 2583 |
| BmcAI | AGTACT | 2 cut(s) | 643, 2154 |
| Bme1390I | CCNGG | 4 cut(s) | 500, 999, 1569, 2390 |
| Bme18I | GGWCC | 5 cut(s) | 885, 955, 995, 2655, 3088 |
| BmeT110I | CYCGRG | 1 cut(s) | 1994 |
| BmgT120I | GGNCC | 6 cut(s) | 885, 955, 995, 2005, 2655, 3088 |
| BmiI | GGNNCC | 4 cut(s) | 320, 886, 1566, 2656 |
| BmrFI | CCNGG | 4 cut(s) | 500, 999, 1569, 2390 |
| BmrI | ACTGGG | 3 cut(s) | 129, 1396, 2661 |
| BmsI | GCATC | 9 cut(s) | 940, 1497, 1600, 1693, 1704, 1729, 2052, 2095, 2628 |
| BmtI | GCTAGC | 1 cut(s) | 1202 |
| BmuI | ACTGGG | 3 cut(s) | 129, 1396, 2661 |
| BpiI | GAAGAC | 5 cut(s) | 42, 250, 444, 1466, 1605 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3029, 3061 |
| BpmI | CTGGAG | 1 cut(s) | 1779 |
| Bpu10I | CCTNAGC | 1 cut(s) | 92 |
| Bsa29I | ATCGAT | 1 cut(s) | 1468 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1905 |
| BsaJI | CCNNGG | 3 cut(s) | 763, 888, 1779 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 122, 152, 2595, 2625 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 193, 448, 784, 1225, 1894, 2425 |
| Bse118I | RCCGGY | 2 cut(s) | 41, 2532 |
| Bse1I | ACTGG | 6 cut(s) | 124, 1391, 1762, 2307, 2439, 2656 |
| Bse21I | CCTNAGG | 1 cut(s) | 293 |
| Bse3DI | GCAATG | 1 cut(s) | 2227 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1905 |
| BseBI | CCWGG | 4 cut(s) | 500, 999, 1569, 2390 |
| BseCI | ATCGAT | 1 cut(s) | 1468 |
| BseDI | CCNNGG | 3 cut(s) | 763, 888, 1779 |
| BseGI | GGATG | 9 cut(s) | 439, 1093, 1512, 1684, 2107, 2184, 2466, 2563, 2842 |
| BseJI | GATNNNNATC | 1 cut(s) | 1905 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 193, 448, 784, 1225, 1894, 2425 |
| BseMI | GCAATG | 1 cut(s) | 2227 |
| BseMII | CTCAG | 6 cut(s) | 83, 284, 621, 2023, 2203, 2655 |
| BseNI | ACTGG | 6 cut(s) | 124, 1391, 1762, 2307, 2439, 2656 |
| BseRI | GAGGAG | 2 cut(s) | 805, 3053 |
| BseSI | GKGCMC | 1 cut(s) | 2438 |
| BseXI | GCAGC | 2 cut(s) | 22, 24 |
| BseYI | CCCAGC | 3 cut(s) | 2202, 2685, 2755 |
| BsgI | GTGCAG | 3 cut(s) | 2278, 2964, 3003 |
| Bsh1236I | CGCG | 4 cut(s) | 248, 275, 627, 2551 |
| Bsh1285I | CGRYCG | 1 cut(s) | 252 |
| BshFI | GGCC | 7 cut(s) | 498, 853, 1218, 2006, 2196, 2710, 3044 |
| BshNI | GGYRCC | 1 cut(s) | 318 |
| BshVI | ATCGAT | 1 cut(s) | 1468 |
| BsiEI | CGRYCG | 1 cut(s) | 252 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2438 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1994 |
| BsiSI | CCGG | 3 cut(s) | 42, 159, 2533 |
| BslFI | GGGAC | 2 cut(s) | 265, 898 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 193, 448, 784, 1225, 1894, 2425 |
| BsmAI | GTCTC | 3 cut(s) | 1518, 1614, 2447 |
| BsmBI | CGTCTC | 1 cut(s) | 1614 |
| BsmFI | GGGAC | 2 cut(s) | 265, 898 |
| BsmI | GAATGC | 1 cut(s) | 2664 |
| BsnI | GGCC | 7 cut(s) | 498, 853, 1218, 2006, 2196, 2710, 3044 |
| BsoBI | CYCGRG | 1 cut(s) | 1994 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2438 |
| BspANI | GGCC | 7 cut(s) | 498, 853, 1218, 2006, 2196, 2710, 3044 |
| BspCNI | CTCAG | 6 cut(s) | 84, 285, 620, 2022, 2202, 2654 |
| BspDI | ATCGAT | 1 cut(s) | 1468 |
| BspFNI | CGCG | 4 cut(s) | 248, 275, 627, 2551 |
| BspHI | TCATGA | 3 cut(s) | 312, 1300, 1594 |
| BspLI | GGNNCC | 4 cut(s) | 320, 886, 1566, 2656 |
| BspMAI | CTGCAG | 2 cut(s) | 487, 520 |
| BspOI | GCTAGC | 1 cut(s) | 1202 |
| BspPI | GGATC | 3 cut(s) | 251, 477, 510 |
| BspT107I | GGYRCC | 1 cut(s) | 318 |
| BspTI | CTTAAG | 2 cut(s) | 473, 1100 |
| BsrDI | GCAATG | 1 cut(s) | 2227 |
| BsrFI | RCCGGY | 2 cut(s) | 41, 2532 |
| BsrI | ACTGG | 6 cut(s) | 124, 1391, 1762, 2307, 2439, 2656 |
| BssAI | RCCGGY | 2 cut(s) | 41, 2532 |
| BssECI | CCNNGG | 3 cut(s) | 763, 888, 1779 |
| BssNAI | GTATAC | 1 cut(s) | 2490 |
| BssT1I | CCWWGG | 2 cut(s) | 888, 1779 |
| Bst1107I | GTATAC | 1 cut(s) | 2490 |
| Bst2UI | CCWGG | 4 cut(s) | 500, 999, 1569, 2390 |
| Bst4CI | ACNGT | 4 cut(s) | 1769, 2566, 2648, 2725 |
| Bst6I | CTCTTC | 4 cut(s) | 777, 1528, 2958, 2997 |
| BstAFI | CTTAAG | 2 cut(s) | 473, 1100 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1556 |
| BstC8I | GCNNGC | 5 cut(s) | 726, 1119, 1200, 1880, 2814 |
| BstDSI | CCRYGG | 1 cut(s) | 763 |
| BstEII | GGTNACC | 3 cut(s) | 2036, 2535, 2716 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 191, 782 |
| BstF5I | GGATG | 9 cut(s) | 439, 1093, 1512, 1684, 2107, 2184, 2466, 2563, 2842 |
| BstFNI | CGCG | 4 cut(s) | 248, 275, 627, 2551 |
| BstHHI | GCGC | 1 cut(s) | 2551 |
| BstMAI | GTCTC | 3 cut(s) | 1518, 1614, 2447 |
| BstMCI | CGRYCG | 1 cut(s) | 252 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 32, 38, 102, 1208, 1556 |
| BstNI | CCWGG | 4 cut(s) | 500, 999, 1569, 2390 |
| BstNSI | RCATGY | 3 cut(s) | 1121, 2413, 2816 |
| BstPI | GGTNACC | 3 cut(s) | 2036, 2535, 2716 |
| BstSCI | CCNGG | 4 cut(s) | 498, 997, 1567, 2388 |
| BstSFI | CTRYAG | 4 cut(s) | 483, 516, 1437, 1873 |
| BstSLI | GKGCMC | 1 cut(s) | 2438 |
| BstUI | CGCG | 4 cut(s) | 248, 275, 627, 2551 |
| BstV1I | GCAGC | 2 cut(s) | 22, 24 |
| BstV2I | GAAGAC | 5 cut(s) | 42, 250, 444, 1466, 1605 |
| BstX2I | RGATCY | 3 cut(s) | 469, 502, 1790 |
| BstYI | RGATCY | 3 cut(s) | 469, 502, 1790 |
| BstZ17I | GTATAC | 1 cut(s) | 2490 |
| Bsu15I | ATCGAT | 1 cut(s) | 1468 |
| Bsu36I | CCTNAGG | 1 cut(s) | 293 |
| BsuRI | GGCC | 7 cut(s) | 498, 853, 1218, 2006, 2196, 2710, 3044 |
| BsuTUI | ATCGAT | 1 cut(s) | 1468 |
| BtgI | CCRYGG | 1 cut(s) | 763 |
| BtsCI | GGATG | 9 cut(s) | 439, 1093, 1512, 1684, 2107, 2184, 2466, 2563, 2842 |
| BtsI | GCAGTG | 4 cut(s) | 160, 464, 513, 2445 |
| BtsIMutI | CAGTG | 8 cut(s) | 117, 160, 464, 513, 1755, 2017, 2197, 2445 |
| Cac8I | GCNNGC | 5 cut(s) | 726, 1119, 1200, 1880, 2814 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2016 |
| CciI | TCATGA | 3 cut(s) | 312, 1300, 1594 |
| CfoI | GCGC | 1 cut(s) | 2551 |
| Cfr10I | RCCGGY | 2 cut(s) | 41, 2532 |
| Cfr13I | GGNCC | 6 cut(s) | 885, 955, 995, 2005, 2655, 3088 |
| ClaI | ATCGAT | 1 cut(s) | 1468 |
| Csp6I | GTAC | 7 cut(s) | 79, 642, 923, 1260, 2153, 2649, 2682 |
| CviQI | GTAC | 7 cut(s) | 79, 642, 923, 1260, 2153, 2649, 2682 |
| EaeI | YGGCCR | 3 cut(s) | 496, 1216, 2708 |
| Eam1104I | CTCTTC | 4 cut(s) | 777, 1528, 2958, 2997 |
| EarI | CTCTTC | 4 cut(s) | 777, 1528, 2958, 2997 |
| Eco130I | CCWWGG | 2 cut(s) | 888, 1779 |
| Eco147I | AGGCCT | 1 cut(s) | 3044 |
| Eco32I | GATATC | 1 cut(s) | 2875 |
| Eco47I | GGWCC | 5 cut(s) | 885, 955, 995, 2655, 3088 |
| Eco57I | CTGAAG | 5 cut(s) | 399, 1419, 2051, 2078, 2225 |
| Eco81I | CCTNAGG | 1 cut(s) | 293 |
| Eco88I | CYCGRG | 1 cut(s) | 1994 |
| Eco91I | GGTNACC | 3 cut(s) | 2036, 2535, 2716 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 191, 782 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2655 |
| EcoO65I | GGTNACC | 3 cut(s) | 2036, 2535, 2716 |
| EcoRI | GAATTC | 2 cut(s) | 635, 1448 |
| EcoRII | CCWGG | 4 cut(s) | 498, 997, 1567, 2388 |
| EcoRV | GATATC | 1 cut(s) | 2875 |
| EcoT14I | CCWWGG | 2 cut(s) | 888, 1779 |
| EcoT22I | ATGCAT | 3 cut(s) | 1512, 2415, 2666 |
| ErhI | CCWWGG | 2 cut(s) | 888, 1779 |
| Esp3I | CGTCTC | 1 cut(s) | 1614 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 813, 845, 1083, 1115 |
| FaqI | GGGAC | 2 cut(s) | 265, 898 |
| FauNDI | CATATG | 3 cut(s) | 1250, 2986, 3025 |
| FbaI | TGATCA | 3 cut(s) | 309, 1339, 2839 |
| FblI | GTMKAC | 1 cut(s) | 2489 |
| Fnu4HI | GCNGC | 9 cut(s) | 13, 33, 36, 39, 706, 1196, 1718, 2365, 2582 |
| FokI | GGATG | 9 cut(s) | 446, 1100, 1519, 1671, 2114, 2171, 2453, 2570, 2849 |
| Fsp4HI | GCNGC | 9 cut(s) | 13, 33, 36, 39, 706, 1196, 1718, 2365, 2582 |
| FspBI | CTAG | 4 cut(s) | 1199, 1478, 1817, 2156 |
| GlaI | GCGC | 1 cut(s) | 2550 |
| GluI | GCNGC | 9 cut(s) | 13, 33, 36, 39, 706, 1196, 1718, 2365, 2582 |
| GsaI | CCCAGC | 3 cut(s) | 2206, 2689, 2759 |
| GsuI | CTGGAG | 1 cut(s) | 1779 |
| HaeIII | GGCC | 7 cut(s) | 498, 853, 1218, 2006, 2196, 2710, 3044 |
| HapII | CCGG | 3 cut(s) | 42, 159, 2533 |
| HhaI | GCGC | 1 cut(s) | 2551 |
| Hin6I | GCGC | 1 cut(s) | 2549 |
| HinP1I | GCGC | 1 cut(s) | 2549 |
| HincII | GTYRAC | 1 cut(s) | 370 |
| HindII | GTYRAC | 1 cut(s) | 370 |
| HindIII | AAGCTT | 1 cut(s) | 1880 |
| HpaII | CCGG | 3 cut(s) | 42, 159, 2533 |
| HphI | GGTGA | 4 cut(s) | 569, 799, 2728, 2866 |
| Hpy166II | GTNNAC | 7 cut(s) | 126, 370, 668, 2436, 2490, 2501, 2917 |
| Hpy8I | GTNNAC | 7 cut(s) | 126, 370, 668, 2436, 2490, 2501, 2917 |
| Hpy99I | CGWCG | 3 cut(s) | 257, 368, 3056 |
| HpyCH4III | ACNGT | 4 cut(s) | 1769, 2566, 2648, 2725 |
| HpyCH4IV | ACGT | 4 cut(s) | 170, 366, 1576, 1602 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 32, 38, 102, 1208, 1556 |
| HpySE526I | ACGT | 4 cut(s) | 170, 366, 1576, 1602 |
| HspAI | GCGC | 1 cut(s) | 2549 |
| Ksp22I | TGATCA | 3 cut(s) | 309, 1339, 2839 |
| LmnI | GCTCC | 2 cut(s) | 298, 1110 |
| Lsp1109I | GCAGC | 2 cut(s) | 22, 24 |
| LweI | GCATC | 9 cut(s) | 940, 1497, 1600, 1693, 1704, 1729, 2052, 2095, 2628 |
| MaeI | CTAG | 4 cut(s) | 1199, 1478, 1817, 2156 |
| MaeII | ACGT | 4 cut(s) | 170, 366, 1576, 1602 |
| MfeI | CAATTG | 1 cut(s) | 2493 |
| MflI | RGATCY | 3 cut(s) | 469, 502, 1790 |
| MhlI | GDGCHC | 1 cut(s) | 2438 |
| MlsI | TGGCCA | 2 cut(s) | 498, 2710 |
| MluNI | TGGCCA | 2 cut(s) | 498, 2710 |
| MlyI | GAGTC | 6 cut(s) | 287, 1954, 2137, 2948, 2999, 3038 |
| MmeI | TCCRAC | 6 cut(s) | 592, 640, 1372, 1759, 2313, 3115 |
| Mox20I | TGGCCA | 2 cut(s) | 498, 2710 |
| Mph1103I | ATGCAT | 3 cut(s) | 1512, 2415, 2666 |
| MroXI | GAANNNNTTC | 3 cut(s) | 414, 828, 2121 |
| MscI | TGGCCA | 2 cut(s) | 498, 2710 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1505 |
| Msp20I | TGGCCA | 2 cut(s) | 498, 2710 |
| MspA1I | CMGCKG | 2 cut(s) | 35, 72 |
| MspCI | CTTAAG | 2 cut(s) | 473, 1100 |
| MspI | CCGG | 3 cut(s) | 42, 159, 2533 |
| MspR9I | CCNGG | 4 cut(s) | 500, 999, 1569, 2390 |
| MunI | CAATTG | 1 cut(s) | 2493 |
| Mva1269I | GAATGC | 1 cut(s) | 2664 |
| MvaI | CCWGG | 4 cut(s) | 500, 999, 1569, 2390 |
| MvnI | CGCG | 4 cut(s) | 248, 275, 627, 2551 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 32, 38, 102, 1208, 1556 |
| NdeI | CATATG | 3 cut(s) | 1250, 2986, 3025 |
| NheI | GCTAGC | 1 cut(s) | 1198 |
| NlaIV | GGNNCC | 4 cut(s) | 320, 886, 1566, 2656 |
| NmeAIII | GCCGAG | 2 cut(s) | 37, 347 |
| NmuCI | GTSAC | 2 cut(s) | 557, 2716 |
| NsiI | ATGCAT | 3 cut(s) | 1512, 2415, 2666 |
| NspI | RCATGY | 3 cut(s) | 1121, 2413, 2816 |
| PaeI | GCATGC | 2 cut(s) | 1121, 2816 |
| PaeR7I | CTCGAG | 1 cut(s) | 1994 |
| PagI | TCATGA | 3 cut(s) | 312, 1300, 1594 |
| PceI | AGGCCT | 1 cut(s) | 3044 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 252, 1608, 2686 |
| PctI | GAATGC | 1 cut(s) | 2664 |
| PdmI | GAANNNNTTC | 3 cut(s) | 414, 828, 2121 |
| PfeI | GAWTC | 8 cut(s) | 162, 1442, 1487, 1497, 1519, 1625, 1901, 2897 |
| PfoI | TCCNGGA | 1 cut(s) | 997 |
| PkrI | GCNGC | 9 cut(s) | 14, 34, 37, 40, 707, 1197, 1719, 2366, 2583 |
| PleI | GAGTC | 6 cut(s) | 286, 1954, 2136, 2947, 2998, 3037 |
| PpsI | GAGTC | 6 cut(s) | 286, 1954, 2136, 2947, 2998, 3037 |
| PpuMI | RGGWCCY | 1 cut(s) | 2655 |
| Psp5II | RGGWCCY | 1 cut(s) | 2655 |
| Psp6I | CCWGG | 4 cut(s) | 498, 997, 1567, 2388 |
| PspEI | GGTNACC | 3 cut(s) | 2036, 2535, 2716 |
| PspFI | CCCAGC | 3 cut(s) | 2202, 2685, 2755 |
| PspGI | CCWGG | 4 cut(s) | 498, 997, 1567, 2388 |
| PspN4I | GGNNCC | 4 cut(s) | 320, 886, 1566, 2656 |
| PspPI | GGNCC | 6 cut(s) | 885, 955, 995, 2005, 2655, 3088 |
| PspPPI | RGGWCCY | 1 cut(s) | 2655 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 71, 103 |
| PstI | CTGCAG | 2 cut(s) | 487, 520 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2016 |
| PsuI | RGATCY | 3 cut(s) | 469, 502, 1790 |
| RsaI | GTAC | 7 cut(s) | 80, 643, 924, 1261, 2154, 2650, 2683 |
| RsaNI | GTAC | 7 cut(s) | 79, 642, 923, 1260, 2153, 2649, 2682 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1505 |
| SatI | GCNGC | 9 cut(s) | 13, 33, 36, 39, 706, 1196, 1718, 2365, 2582 |
| Sau96I | GGNCC | 6 cut(s) | 885, 955, 995, 2005, 2655, 3088 |
| ScaI | AGTACT | 2 cut(s) | 643, 2154 |
| SchI | GAGTC | 6 cut(s) | 287, 1954, 2137, 2948, 2999, 3038 |
| ScrFI | CCNGG | 4 cut(s) | 500, 999, 1569, 2390 |
| SduI | GDGCHC | 1 cut(s) | 2438 |
| SfaNI | GCATC | 9 cut(s) | 940, 1497, 1600, 1693, 1704, 1729, 2052, 2095, 2628 |
| SfcI | CTRYAG | 4 cut(s) | 483, 516, 1437, 1873 |
| Sfr274I | CTCGAG | 1 cut(s) | 1994 |
| SinI | GGWCC | 5 cut(s) | 885, 955, 995, 2655, 3088 |
| SlaI | CTCGAG | 1 cut(s) | 1994 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1505 |
| SmlI | CTYRAG | 3 cut(s) | 473, 1100, 1994 |
| SmoI | CTYRAG | 3 cut(s) | 473, 1100, 1994 |
| SphI | GCATGC | 2 cut(s) | 1121, 2816 |
| SseBI | AGGCCT | 1 cut(s) | 3044 |
| SspI | AATATT | 2 cut(s) | 357, 1413 |
| SspMI | CTAG | 4 cut(s) | 1199, 1478, 1817, 2156 |
| StuI | AGGCCT | 1 cut(s) | 3044 |
| StyD4I | CCNGG | 4 cut(s) | 498, 997, 1567, 2388 |
| StyI | CCWWGG | 2 cut(s) | 888, 1779 |
| TaaI | ACNGT | 4 cut(s) | 1769, 2566, 2648, 2725 |
| TaiI | ACGT | 4 cut(s) | 173, 369, 1579, 1605 |
| TaqII | GACCGA | 1 cut(s) | 237 |
| TatI | WGTACW | 4 cut(s) | 641, 1259, 2152, 2648 |
| TauI | GCSGC | 7 cut(s) | 35, 41, 708, 1198, 1720, 2367, 2584 |
| TfiI | GAWTC | 8 cut(s) | 162, 1442, 1487, 1497, 1519, 1625, 1901, 2897 |
| TscAI | CASTG | 8 cut(s) | 124, 160, 464, 520, 1762, 2017, 2197, 2452 |
| TseFI | GTSAC | 2 cut(s) | 557, 2716 |
| TseI | GCWGC | 2 cut(s) | 12, 35 |
| Tsp45I | GTSAC | 2 cut(s) | 557, 2716 |
| TspGWI | ACGGA | 5 cut(s) | 752, 1100, 1649, 2114, 2312 |
| TspRI | CASTG | 8 cut(s) | 124, 160, 464, 520, 1762, 2017, 2197, 2452 |
| Vha464I | CTTAAG | 2 cut(s) | 473, 1100 |
| VneI | GTGCAC | 1 cut(s) | 2434 |
| VpaK11BI | GGWCC | 5 cut(s) | 885, 955, 995, 2655, 3088 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 191, 782 |
| XapI | RAATTY | 7 cut(s) | 635, 690, 1296, 1448, 1672, 1727, 2888 |
| XbaI | TCTAGA | 2 cut(s) | 1477, 1816 |
| XceI | RCATGY | 3 cut(s) | 1121, 2413, 2816 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 551 |
| XhoI | CTCGAG | 1 cut(s) | 1994 |
| XmiI | GTMKAC | 1 cut(s) | 2489 |
| XmnI | GAANNNNTTC | 3 cut(s) | 414, 828, 2121 |
| XspI | CTAG | 4 cut(s) | 1199, 1478, 1817, 2156 |
| ZrmI | AGTACT | 2 cut(s) | 643, 2154 |
| Zsp2I | ATGCAT | 3 cut(s) | 1512, 2415, 2666 |