TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 86 - 155 | 3.6e-14 | Disease resistance protein Roq1-like, winged-helix domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 793 |
| AclI | AACGTT | 1 cut(s) | 158 |
| AclWI | GGATC | 1 cut(s) | 145 |
| AcsI | RAATTY | 2 cut(s) | 128, 568 |
| AcuI | CTGAAG | 1 cut(s) | 564 |
| AfaI | GTAC | 3 cut(s) | 616, 810, 834 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 65 |
| AgsI | TTSAA | 8 cut(s) | 77, 128, 242, 377, 398, 412, 554, 739 |
| AhlI | ACTAGT | 1 cut(s) | 775 |
| AjnI | CCWGG | 1 cut(s) | 475 |
| AluBI | AGCT | 5 cut(s) | 17, 25, 237, 658, 673 |
| AluI | AGCT | 5 cut(s) | 17, 25, 237, 658, 673 |
| Alw26I | GTCTC | 1 cut(s) | 640 |
| AlwI | GGATC | 1 cut(s) | 145 |
| AoxI | GGCC | 1 cut(s) | 602 |
| ApoI | RAATTY | 2 cut(s) | 128, 568 |
| BccI | CCATC | 1 cut(s) | 326 |
| BciT130I | CCWGG | 1 cut(s) | 477 |
| BcoDI | GTCTC | 1 cut(s) | 640 |
| BcuI | ACTAGT | 1 cut(s) | 775 |
| BfaI | CTAG | 4 cut(s) | 119, 248, 606, 776 |
| BlpI | GCTNAGC | 1 cut(s) | 659 |
| Bme1390I | CCNGG | 1 cut(s) | 477 |
| BmiI | GGNNCC | 2 cut(s) | 500, 826 |
| BmrFI | CCNGG | 1 cut(s) | 477 |
| BmsI | GCATC | 2 cut(s) | 719, 780 |
| BpmI | CTGGAG | 1 cut(s) | 638 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 659 |
| BpuEI | CTTGAG | 2 cut(s) | 41, 544 |
| BsaAI | YACGTR | 1 cut(s) | 667 |
| BsaJI | CCNNGG | 1 cut(s) | 828 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 633, 663 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 65 |
| BseBI | CCWGG | 1 cut(s) | 477 |
| BseDI | CCNNGG | 1 cut(s) | 828 |
| BseGI | GGATG | 2 cut(s) | 341, 734 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 65 |
| BseMII | CTCAG | 3 cut(s) | 241, 635, 673 |
| BseRI | GAGGAG | 1 cut(s) | 641 |
| BshFI | GGCC | 1 cut(s) | 604 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 65 |
| BsmAI | GTCTC | 1 cut(s) | 640 |
| BsnI | GGCC | 1 cut(s) | 604 |
| Bsp143I | GATC | 1 cut(s) | 137 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 659 |
| BspACI | CCGC | 1 cut(s) | 793 |
| BspANI | GGCC | 1 cut(s) | 604 |
| BspCNI | CTCAG | 3 cut(s) | 240, 636, 672 |
| BspLI | GGNNCC | 2 cut(s) | 500, 826 |
| BspPI | GGATC | 1 cut(s) | 145 |
| BssECI | CCNNGG | 1 cut(s) | 828 |
| BssMI | GATC | 1 cut(s) | 137 |
| BssT1I | CCWWGG | 1 cut(s) | 828 |
| Bst2UI | CCWGG | 1 cut(s) | 477 |
| Bst4CI | ACNGT | 2 cut(s) | 104, 503 |
| Bst6I | CTCTTC | 1 cut(s) | 582 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 424 |
| BstBAI | YACGTR | 1 cut(s) | 667 |
| BstC8I | GCNNGC | 1 cut(s) | 39 |
| BstDEI | CTNAG | 3 cut(s) | 227, 644, 659 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 63 |
| BstF5I | GGATG | 2 cut(s) | 341, 734 |
| BstKTI | GATC | 1 cut(s) | 140 |
| BstMAI | GTCTC | 1 cut(s) | 640 |
| BstMBI | GATC | 1 cut(s) | 137 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 424 |
| BstNI | CCWGG | 1 cut(s) | 477 |
| BstNSI | RCATGY | 1 cut(s) | 41 |
| BstSCI | CCNGG | 1 cut(s) | 475 |
| BstX2I | RGATCY | 1 cut(s) | 137 |
| BstYI | RGATCY | 1 cut(s) | 137 |
| BsuRI | GGCC | 1 cut(s) | 604 |
| BtsCI | GGATG | 2 cut(s) | 341, 734 |
| Cac8I | GCNNGC | 1 cut(s) | 39 |
| Csp6I | GTAC | 3 cut(s) | 615, 809, 833 |
| CviAII | CATG | 3 cut(s) | 38, 419, 846 |
| CviJI | RGCY | 9 cut(s) | 17, 25, 237, 247, 266, 604, 658, 663, 673 |
| CviKI_1 | RGCY | 9 cut(s) | 17, 25, 237, 247, 266, 604, 658, 663, 673 |
| CviQI | GTAC | 3 cut(s) | 615, 809, 833 |
| DdeI | CTNAG | 3 cut(s) | 227, 644, 659 |
| DpnI | GATC | 1 cut(s) | 139 |
| DpnII | GATC | 1 cut(s) | 137 |
| DraI | TTTAAA | 1 cut(s) | 46 |
| Eam1104I | CTCTTC | 1 cut(s) | 582 |
| EarI | CTCTTC | 1 cut(s) | 582 |
| Eco130I | CCWWGG | 1 cut(s) | 828 |
| Eco147I | AGGCCT | 1 cut(s) | 604 |
| Eco32I | GATATC | 2 cut(s) | 71, 200 |
| Eco57I | CTGAAG | 1 cut(s) | 564 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 63 |
| EcoRII | CCWGG | 1 cut(s) | 475 |
| EcoRV | GATATC | 2 cut(s) | 71, 200 |
| EcoT14I | CCWWGG | 1 cut(s) | 828 |
| ErhI | CCWWGG | 1 cut(s) | 828 |
| FaeI | CATG | 3 cut(s) | 41, 422, 849 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 35, 57, 89 |
| FatI | CATG | 3 cut(s) | 37, 418, 845 |
| FauNDI | CATATG | 1 cut(s) | 751 |
| FokI | GGATG | 2 cut(s) | 348, 741 |
| FspBI | CTAG | 4 cut(s) | 119, 248, 606, 776 |
| GsuI | CTGGAG | 1 cut(s) | 638 |
| HaeIII | GGCC | 1 cut(s) | 604 |
| Hin1II | CATG | 3 cut(s) | 41, 422, 849 |
| HincII | GTYRAC | 1 cut(s) | 473 |
| HindII | GTYRAC | 1 cut(s) | 473 |
| HindIII | AAGCTT | 1 cut(s) | 235 |
| HinfI | GANTC | 5 cut(s) | 225, 251, 360, 591, 648 |
| Hpy166II | GTNNAC | 1 cut(s) | 473 |
| Hpy188I | TCNGA | 2 cut(s) | 230, 457 |
| Hpy188III | TCNNGA | 6 cut(s) | 20, 74, 431, 506, 523, 537 |
| Hpy8I | GTNNAC | 1 cut(s) | 473 |
| Hpy99I | CGWCG | 1 cut(s) | 507 |
| HpyAV | CCTTC | 4 cut(s) | 236, 392, 548, 814 |
| HpyCH4III | ACNGT | 2 cut(s) | 104, 503 |
| HpyCH4IV | ACGT | 2 cut(s) | 158, 666 |
| HpyCH4V | TGCA | 2 cut(s) | 350, 418 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 424 |
| HpyF3I | CTNAG | 3 cut(s) | 227, 644, 659 |
| HpySE526I | ACGT | 2 cut(s) | 158, 666 |
| Hsp92II | CATG | 3 cut(s) | 41, 422, 849 |
| Kzo9I | GATC | 1 cut(s) | 137 |
| LmnI | GCTCC | 1 cut(s) | 486 |
| LpnPI | CCDG | 6 cut(s) | 462, 489, 586, 668, 791, 797 |
| LweI | GCATC | 2 cut(s) | 719, 780 |
| MaeI | CTAG | 4 cut(s) | 119, 248, 606, 776 |
| MaeII | ACGT | 2 cut(s) | 158, 666 |
| MaeIII | GTNAC | 1 cut(s) | 316 |
| MalI | GATC | 1 cut(s) | 139 |
| MboI | GATC | 1 cut(s) | 137 |
| MboII | GAAGA | 6 cut(s) | 20, 23, 246, 557, 569, 649 |
| MfeI | CAATTG | 1 cut(s) | 179 |
| MflI | RGATCY | 1 cut(s) | 137 |
| MluCI | AATT | 6 cut(s) | 128, 179, 188, 558, 568, 840 |
| MlyI | GAGTC | 2 cut(s) | 219, 642 |
| MmeI | TCCRAC | 1 cut(s) | 701 |
| MnlI | CCTC | 5 cut(s) | 101, 380, 585, 597, 662 |
| MseI | TTAA | 5 cut(s) | 45, 150, 597, 707, 762 |
| MspR9I | CCNGG | 1 cut(s) | 477 |
| MunI | CAATTG | 1 cut(s) | 179 |
| MvaI | CCWGG | 1 cut(s) | 477 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 424 |
| NdeI | CATATG | 1 cut(s) | 751 |
| NdeII | GATC | 1 cut(s) | 137 |
| NlaIII | CATG | 3 cut(s) | 41, 422, 849 |
| NlaIV | GGNNCC | 2 cut(s) | 500, 826 |
| NmuCI | GTSAC | 1 cut(s) | 316 |
| NspI | RCATGY | 1 cut(s) | 41 |
| PaeI | GCATGC | 1 cut(s) | 41 |
| PceI | AGGCCT | 1 cut(s) | 604 |
| PfeI | GAWTC | 3 cut(s) | 251, 360, 591 |
| PflFI | GACNNNGTC | 1 cut(s) | 314 |
| PleI | GAGTC | 2 cut(s) | 219, 642 |
| PpsI | GAGTC | 2 cut(s) | 219, 642 |
| Ppu21I | YACGTR | 1 cut(s) | 667 |
| Psp1406I | AACGTT | 1 cut(s) | 158 |
| Psp6I | CCWGG | 1 cut(s) | 475 |
| PspGI | CCWGG | 1 cut(s) | 475 |
| PspN4I | GGNNCC | 2 cut(s) | 500, 826 |
| PsuI | RGATCY | 1 cut(s) | 137 |
| PsyI | GACNNNGTC | 1 cut(s) | 314 |
| RsaI | GTAC | 3 cut(s) | 616, 810, 834 |
| RsaNI | GTAC | 3 cut(s) | 615, 809, 833 |
| SaqAI | TTAA | 5 cut(s) | 45, 150, 597, 707, 762 |
| Sau3AI | GATC | 1 cut(s) | 137 |
| SchI | GAGTC | 2 cut(s) | 219, 642 |
| ScrFI | CCNGG | 1 cut(s) | 477 |
| SfaNI | GCATC | 2 cut(s) | 719, 780 |
| SmlI | CTYRAG | 2 cut(s) | 20, 523 |
| SmoI | CTYRAG | 2 cut(s) | 20, 523 |
| SpeI | ACTAGT | 1 cut(s) | 775 |
| SphI | GCATGC | 1 cut(s) | 41 |
| Sse9I | AATT | 6 cut(s) | 128, 179, 188, 558, 568, 840 |
| SseBI | AGGCCT | 1 cut(s) | 604 |
| SsiI | CCGC | 1 cut(s) | 793 |
| SspMI | CTAG | 4 cut(s) | 119, 248, 606, 776 |
| StuI | AGGCCT | 1 cut(s) | 604 |
| StyD4I | CCNGG | 1 cut(s) | 475 |
| StyI | CCWWGG | 1 cut(s) | 828 |
| TaaI | ACNGT | 2 cut(s) | 104, 503 |
| TaiI | ACGT | 2 cut(s) | 161, 669 |
| TaqI | TCGA | 4 cut(s) | 223, 430, 505, 589 |
| TaqII | GACCGA | 1 cut(s) | 458 |
| TasI | AATT | 6 cut(s) | 128, 179, 188, 558, 568, 840 |
| TatI | WGTACW | 1 cut(s) | 614 |
| TfiI | GAWTC | 3 cut(s) | 251, 360, 591 |
| Tru1I | TTAA | 5 cut(s) | 45, 150, 597, 707, 762 |
| Tru9I | TTAA | 5 cut(s) | 45, 150, 597, 707, 762 |
| TseFI | GTSAC | 1 cut(s) | 316 |
| Tsp45I | GTSAC | 1 cut(s) | 316 |
| TspDTI | ATGAA | 3 cut(s) | 17, 21, 650 |
| Tth111I | GACNNNGTC | 1 cut(s) | 314 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 63 |
| XapI | RAATTY | 2 cut(s) | 128, 568 |
| XceI | RCATGY | 1 cut(s) | 41 |
| XspI | CTAG | 4 cut(s) | 119, 248, 606, 776 |