MD02G1039200.v1.1

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
3175203 .. 3181150
5948 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1039200.v1.1.491

Sequence Viewer

Length: 2913 bp
ATGTATGCAGATTCGAGTTGGTGTCTTGACGAGCTGGTTAAGATCATGGAGTGCAGAGACAAACTGGGGCGAGATGTTTTTCCAATATTCTATCATGTTGATCCTTCACATGTCAGGAAGCAAAATGGAGATTTTGCCGAAGCATTTCAGAAGCACGAAAAGGACATCCATGAAGAAAAAGATGGCAAGACACGTGAAAAGGTAAAGCAGTGGAGATGGGCTCTTACAGAAGCTGCAAATTTGTCTGGCTGCCATCTTAAAATCACTGACAATAGGCACGAAGCAACGGTTATAAGAGAAATTATTGACAAGGTTATTACGAACTGGCTTTCGACCATAAACATATTACCAGTGGCCAAGCACCAAGTTGGAATCGATTCTCGGATTAAAGATATTATCACTTATCTTTCAAGTGATGGATCAGATGATGTTCTCATGGTTGGAATTTGGGGGATGGGTGGATTAGGTAAAACAACAGCTGCGAAAGCCATTTTTAACAAAATTCATCATAAGTTCAAGTTCAAATGTTTCCTTGCCGACGTTCGCGACAATACAAGTAAACATGGCCTGGCTTACTTGCAAGAAAAACTTATTTTTGACGTCTTGAAAGAGAAGTCTGAAATAAGCAGTGTTGATAAAGGTATCAGTCTGATAGAAGATCAATTTTCACATAGAAAGGTACTTGTCATCATAGACAACATAGATGAAGTGGAACAACTAAATGCAATAGCTGGAGATCACAAATGGTTTGGTCCTGGAAGTAGAATTATCATAACGACACGAGATGAACATTTACTAAAGCAAGGGAAAGTGAACAAGACATATCCGGCCCAGGAATTGAATAAAGAAGAAGCTCTAAAGCTCTTGAGTTGGCATGCCTTTGGAAATCGACGGCCTAACGAAGGATTTCTTGAACTCTCAGAAAAGTTTGTTTCTTACTGTGATGGTTTGCCACTAGCCCTCGAAGTTTTAGGTTCTTTTTTGGTTAAAAGACCCATTGCAGAGTGGGAATGTGAATTGAAGAAATTGAAAACAACTCCTGAAGGAAAAATAATAAAACCACTAAGAATAAGCTTTGAAGGGCTAGATGAGACACAGAAGGCTATATTCCTTGACATATGTTGTTTCTTTATTGGAGAGGACAGGGACTATGTCACAAAAGTATTAGATGAATGTGAATTTTTTGCAACAATAGGAATCAGTGTCCTCTGTGAACGATGCCTTGTAACTGTTGAACGCAACAAGTTGAATATGCATGATTTGCTTCAAGAAATGGCCAGAGTAATCATTTCTGAAAAATCTCCTCGTCAGCCTGAAAAATGGAGTAGGTTGTGGAATCCTCAAGATGTCACCAATGTATTAACAAAGAAATCTGGAACTGAAGAAGTTGAAGGACTTGCTCTACATTTCCCTAACAAGTCTAGTTGTTTCAGTACAGAAGCATTTGCCCATATGAATAAACTGAGACTGCTTGACCTCGAGAACGTAGAGCTCAATGGAGAATATGAACATCTTCCCAAAGAGTTAATATGGTTGCGCTGGCATAGATGCCATTTGCAGTCCATACCGGATGACTTTTTTAATCAAGATAAACTAGTGTTTTTAGAGATGATCGGCAGCAGTCTGGTAAATGTTTGGGAGGGTTCCAAGTCGCTTCAGAACTTGAAAATCATTAATCTCAGTGGTTCCAGTTTCCTAATTACATCACCGGACTTTTCACAAGTCCCAAATCTTGAAGAGTTGATATTGGATAGCTGTATAAGTTTGTTAGAGATTCACCCCTCCATTGGTAATCTTACAAGACTCTCTTTGGTGAACCTTGAAGGATGTCACAAGCTTGTTTCTCTTCCAAGGGATTTCTATAGGTGGAAATCTGTGGAGACTGTTCTTCTTAATGGTTGTTATCAATTCAGATTCAGAGAACTGCATGAGGATTTAGGGGAGATGGAATCATTGAGAGTACTTAAGATGAGACAGACATCCATAAGTCAACTACCACATACCACAGTAAGATTGAAGAAACTCACTCATTTATCTTTAATGGCAGCGCCTTGTGGTGAGCGTTCATATGCTTACGGTCTGCCAAGCTTCAGTGGTGATCAAATCACCAACATTCATATCATTCGTCACACAATGGGCGCATTAAATGATGATGGAGTCCCCAAGGATATTGGGAGTCTAATTTCTTTACAATATTTGGATCTTGGAGGGAATGACTTTCATACCCTACCAAGCTTCAGTGGTCTTTCAAAGCTTGAAACTCTACGGTTAAGTAAATGCAAGTTTCTTCATACAATCCCCGACTTACCAACAAATTTGAAATTTCTGGATGCCAATGGTTGCCCTGCATTGGAAACAATGCCTAATTTTTCAGAAATGACAAATATGAGAGAACTGCATGTAAGTGATTCATGCAAACTCACTGAGGTTCCAGGCCTGGATAAGTCATTAAACTCCATGACATTGATTCATATGAGTAACTGCACCAATCTCACAGCTGATTTTAAGAAGAACATCCTACAGGGATGGACTTCCTGCGGACTCGGTGGAATTTTCCTCCATTGGAGTTATGTTCCTGATTGGTTTGAGTTTGTCAATGATGGCAATAAAGTCAGTTTTGATATTCCCCCTAGTGATGATCGTAATTTTGAAGGACTGACTCTGTTCTGCATTTCCCAATTTTCTTCCACTCTTGCCATTACTATTATAAATAATACCAAGCATACTAAGTTGCGGGAGACCATCACAATCAGATTACATGTGCGTGATTATCTTTGGCAGGGACATATACCGAACGATAAGCTCAATTTGCAAAGCGGGGATAAAGTTGATGTAATTTTTGGAGACAGTGATTATCCTGATAGAATGGAGAGAACAGGAGTTAATCTAGTATGGGACAAACCTGTAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

971

Amino Acids

110.66

Weight (kDa)

6.1

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 2 - 109 1.8e-23 TIR domain
NB-ARC PF00931 128 - 296 5.7e-17 NB-ARC domain
WHD_ROQ1 PF23282 364 - 434 2.3e-17 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 719 - 844 9.5e-07 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36930 AT5G36930 AT5G36930 AT5G36930
fragaria_vesca FvH4_3g45361 FvH4_3g45380 FvH4_5g21061 FvH4_5g21062 FvH4_5g21063 FvH4_5g32050 FvH4_5g32970 FvH4_5g32990 FvH4_5g34190 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34211 FvH4_5g34240 FvH4_5g34250
malus_domestica MD00G1011700.v1.1 MD00G1026100.v1.1 MD00G1026500.v1.1 MD00G1027000.v1.1 MD00G1027100.v1.1 MD00G1027700.v1.1 MD00G1027800.v1.1 MD00G1028000.v1.1 MD00G1220000.v1.1 MD02G1024400.v1.1 MD02G1024800.v1.1 MD02G1026000.v1.1 MD02G1026100.v1.1 MD02G1031800.v1.1 MD02G1038500.v1.1 MD02G1038700.v1.1 MD02G1039200.v1.1 MD02G1040600.v1.1 MD02G1040900.v1.1 MD02G1041200.v1.1 MD02G1041300.v1.1 MD02G1041700.v1.1 MD02G1042000.v1.1 MD02G1043800.v1.1 MD02G1043900.v1.1 MD02G1044300.v1.1 MD02G1045200.v1.1 MD02G1045300.v1.1 MD02G1051200.v1.1 MD02G1052200.v1.1 MD02G1052800.v1.1 MD02G1053100.v1.1 MD02G1053600.v1.1 MD02G1055500.v1.1 MD02G1063300.v1.1 MD02G1063400.v1.1 MD02G1063800.v1.1 MD02G1306500.v1.1 MD02G1306600.v1.1 MD02G1306700.v1.1 MD02G1306900.v1.1 MD02G1307200.v1.1 MD04G1011700.v1.1 MD05G1315400.v1.1 MD05G1316000.v1.1 MD05G1316700.v1.1 MD05G1317000.v1.1 MD05G1317300.v1.1 MD05G1317600.v1.1 MD05G1317700.v1.1 MD07G1102800.v1.1 MD07G1238200.v1.1 MD08G1175900.v1.1 MD08G1203600.v1.1 MD09G1024200.v1.1 MD09G1039600.v1.1 MD09G1044800.v1.1 MD09G1045100.v1.1 MD10G1038700.v1.1 MD10G1039000.v1.1 MD10G1039200.v1.1 MD10G1040000.v1.1 MD10G1040200.v1.1 MD10G1040600.v1.1 MD10G1040800.v1.1 MD10G1297300.v1.1 MD12G1247500.v1.1 MD12G1247900.v1.1 MD12G1248300.v1.1 MD12G1248800.v1.1 MD15G1103700.v1.1 MD15G1103800.v1.1 MD15G1104000.v1.1 MD15G1179600.v1.1 MD15G1182500.v1.1 MD16G1068200.v1.1 MD16G1068300.v1.1 MD17G1024600.v1.1 MD17G1024700.v1.1 MD17G1025000.v1.1 MD17G1025900.v1.1
prunus_persica Prupe.1G539800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G557100_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557300_v2.0.a1
pyrus_communis pycom02g02080 pycom02g02090 pycom02g02110 pycom02g03220 pycom02g03260 pycom02g03370 pycom02g03390 pycom02g03410 pycom02g03420 pycom02g03450 pycom02g03500 pycom02g03730 pycom02g03770 pycom02g04400 pycom02g04410 pycom02g04430 pycom02g04450 pycom02g04460 pycom02g04490 pycom02g05200 pycom02g25710 pycom02g25750 pycom02g25790 pycom02g25810 pycom02g25830 pycom04g00920 pycom04g00930 pycom04g00940 pycom05g29300 pycom05g29310 pycom05g29380 pycom05g29410 pycom07g06310 pycom07g21420 pycom08g15070 pycom08g17540 pycom08g17560 pycom08g17570 pycom10g02670 pycom10g02680 pycom10g02700 pycom10g02770 pycom10g02790 pycom10g02800 pycom10g02810 pycom10g25020 pycom10g25030 pycom10g25050 pycom10g25080 pycom111g01990 pycom111g02000 pycom111g02030 pycom111g02040 pycom111g02050 pycom111g02060 pycom12g22710 pycom12g22720 pycom12g22730 pycom12g22740 pycom12g22750 pycom12g22770 pycom12g22780 pycom12g22790 pycom12g22800 pycom12g22810 pycom12g22830 pycom12g22840 pycom12g22860 pycom15g09440 pycom15g09480 pycom15g16120 pycom15g32380 pycom16g05970 pycom17g02100
rosa_chinensis RchiOBHm_Chr2g0144661 RchiOBHm_Chr4g0407491 RchiOBHm_Chr4g0407501 RchiOBHm_Chr4g0412381 RchiOBHm_Chr7g0208191 RchiOBHm_Chr7g0208201 RchiOBHm_Chr7g0208211 RchiOBHm_Chr7g0208221 RchiOBHm_Chr7g0228071 RchiOBHm_Chr7g0228121 RchiOBHm_Chr7g0230971 RchiOBHm_Chr7g0230981 RchiOBHm_Chr7g0233901 RchiOBHm_Chr7g0233951 RchiOBHm_Chr7g0233961 RchiOBHm_Chr7g0233991 RchiOBHm_Chr7g0234021 RchiOBHm_Chr7g0234151 RchiOBHm_Chr7g0234161 RchiOBHm_Chr7g0234241 RchiOBHm_Chr7g0234501 RchiOBHm_Chr7g0234641 RchiOBHm_Chr7g0234771 RchiOBHm_Chr7g0234781 RchiOBHm_Chr7g0234991 RchiOBHm_Chr7g0241291 RchiOBHm_Chr7g0241301
rosa_laevigata RLG00000001186 RLG00000001187 RLG00000001212 RLG00000001226 RLG00000001233 RLG00000001590 RLG00000003242 RLG00000003243 RLG00000003249 RLG00000008688 RLG00000008690
rosa_multiflora Rmu_co7966574.1_g000001 Rmu_co8120830.1_g000001 Rmu_co8142226.1_g000001 Rmu_co8293083.1_g000001 Rmu_co8351227.1_g000001 Rmu_co8380159.1_g000001 Rmu_co8456505.1_g000001 Rmu_sc0000676.1_g000025 Rmu_sc0000706.1_g000018 Rmu_sc0000706.1_g000040 Rmu_sc0000740.1_g000029 Rmu_sc0000740.1_g000032 Rmu_sc0000740.1_g000037 Rmu_sc0000740.1_g000040 Rmu_sc0000762.1_g000003 Rmu_sc0000762.1_g000019 Rmu_sc0000762.1_g000034 Rmu_sc0000762.1_g000069 Rmu_sc0000892.1_g000001 Rmu_sc0000945.1_g000040 Rmu_sc0001913.1_g000037 Rmu_sc0001913.1_g000041 Rmu_sc0001913.1_g000049 Rmu_sc0002775.1_g000017 Rmu_sc0002775.1_g000018 Rmu_sc0002775.1_g000020 Rmu_sc0002775.1_g000021 Rmu_sc0002775.1_g000022 Rmu_sc0002775.1_g000025 Rmu_sc0002775.1_g000026 Rmu_sc0002775.1_g000028 Rmu_sc0002775.1_g000030 Rmu_sc0004858.1_g000002 Rmu_sc0004864.1_g000022 Rmu_sc0005038.1_g000023 Rmu_sc0005840.1_g000014 Rmu_sc0006724.1_g000003 Rmu_sc0006824.1_g000005 Rmu_sc0007869.1_g000003 Rmu_sc0007869.1_g000005 Rmu_sc0007869.1_g000008 Rmu_sc0008646.1_g000007 Rmu_sc0009637.1_g000009 Rmu_sc0010500.1_g000002 Rmu_sc0010500.1_g000012 Rmu_sc0012403.1_g000025 Rmu_sc0013768.1_g000025 Rmu_sc0015625.1_g000001 Rmu_sc0019715.1_g000001 Rmu_sc0021133.1_g000002 Rmu_sc0021904.1_g000001 Rmu_sc0021904.1_g000003 Rmu_sc0021904.1_g000004 Rmu_sc0022054.1_g000001 Rmu_sc0026025.1_g000001 Rmu_sc0036828.1_g000002 Rmu_sc0041808.1_g000001 Rmu_ssc0000012.1_g000001
rosa_roxburghii Rroxscaffold_3G00226370 Rroxscaffold_3G00226860 Rroxscaffold_3G00226900 Rroxscaffold_3G00226930 Rroxscaffold_3G00226940 Rroxscaffold_3G00226970 Rroxscaffold_3G00226980 Rroxscaffold_3G00231530 Rroxscaffold_3G00237090 Rroxscaffold_3G00250760 Rroxscaffold_3G00250800
rosa_rugosa Rorug04G0082300 Rorug07G0101800 Rorug07G0102000 Rorug07G0102100 Rorug07G0221200 Rorug07G0245700 Rorug07G0245700 Rorug07G0245700 Rorug07G0263900 Rorug07G0264000 Rorug07G0264000 Rorug07G0264500 Rorug07G0282900 Rorug07G0282900 Rorug07G0283100 Rorug07G0283200.1 Rorug07G0283300 Rorug07G0283900 Rorug07G0284000 Rorug07G0284100 Rorug07G0284300 Rorug07G0284400 Rorug07G0284500 Rorug07G0285000 Rorug07G0285200 Rorug07G0285300 Rorug07G0285500 Rorug07G0286800 Rorug07G0286900 Rorug07G0287100 Rorug07G0287200
rosa_samantha Rh7AG236100 Rh7AG236200 Rh7AG236300 Rh7AG440000 Rh7AG440100 Rh7BG411900 Rh7BG412000 Rh7BG412600 Rh7CG251300 Rh7CG417700 Rh7CG460100 Rh7DG242100 Rh7DG242200 Rh7DG242300 Rh7DG429300
rosa_wichuraiana Rw0G005070 Rw0G010780 Rw0G012530 Rw7G020110 Rw7G020160 Rw7G020170 Rw7G033210 Rw7G033230 Rw7G033250 Rw7G034540 Rw7G035150 Rw7G036190 Rw7G036210 Rw7G036260 Rw7G036270 Rw7G036290 Rw7G036300 Rw7G036310 Rw7G036350 Rw7G036360 Rw7G036440 Rw7G036510 Rw7G036530 Rw7G036570 Rw7G036590 Rw7G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 293, 2708
AatII GACGTC 1 cut(s) 603
AccII CGCG 1 cut(s) 546
AciI CCGC 3 cut(s) 2538, 2734, 2817
AclWI GGATC 3 cut(s) 95, 427, 2208
AcoI YGGCCR 2 cut(s) 354, 1275
AcsI RAATTY 7 cut(s) 238, 444, 501, 1178, 2314, 2321, 2550
AcuI CTGAAG 5 cut(s) 1062, 1401, 1640, 2074, 2221
AcvI CACGTG 1 cut(s) 194
AcyI GRCGYC 1 cut(s) 600
AfaI GTAC 3 cut(s) 681, 1435, 1962
AfiI CCNNNNNNNGG 3 cut(s) 902, 1787, 2350
AflII CTTAAG 1 cut(s) 1964
AflIII ACRYGT 3 cut(s) 109, 191, 2758
AhlI ACTAGT 1 cut(s) 1594
AjnI CCWGG 5 cut(s) 567, 754, 831, 2431, 2436
Alw21I GWGCWC 1 cut(s) 1494
Alw26I GTCTC 7 cut(s) 51, 1085, 1459, 1874, 1966, 2732, 2838
AlwI GGATC 3 cut(s) 95, 427, 2208
AlwNI CAGNNNCTG 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 1478
AoxI GGCC 6 cut(s) 354, 565, 828, 893, 1275, 2434
ApeKI GCWGC 5 cut(s) 233, 249, 479, 1617, 2045
ApoI RAATTY 7 cut(s) 238, 444, 501, 1178, 2314, 2321, 2550
AseI ATTAAT 1 cut(s) 1674
Asp700I GAANNNNTTC 4 cut(s) 144, 376, 906, 1512
AspLEI GCGC 3 cut(s) 1539, 2050, 2141
AspS9I GGNCC 2 cut(s) 752, 829
AsuHPI GGTGA 7 cut(s) 1342, 1698, 1769, 1825, 2069, 2098, 2108
AvaI CYCGRG 1 cut(s) 1478
AvaII GGWCC 1 cut(s) 752
BalI TGGCCA 2 cut(s) 356, 1277
BanII GRGCYC 2 cut(s) 223, 1494
BauI CACGAG 1 cut(s) 780
BbrPI CACGTG 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 1494
BbvI GCAGC 5 cut(s) 220, 236, 466, 1629, 2057
BceAI ACGGC 1 cut(s) 908
BciT130I CCWGG 5 cut(s) 569, 756, 833, 2433, 2438
BclI TGATCA 1 cut(s) 2098
BcoDI GTCTC 7 cut(s) 51, 1085, 1459, 1874, 1966, 2732, 2838
BcuI ACTAGT 1 cut(s) 1594
BfaI CTAG 6 cut(s) 956, 1085, 1422, 1595, 2631, 2888
BfmI CTRYAG 2 cut(s) 1861, 2519
BfoI RGCGCY 1 cut(s) 2051
BfrI CTTAAG 1 cut(s) 1964
BisI GCNGC 5 cut(s) 234, 250, 480, 1618, 2046
BlsI GCNGC 5 cut(s) 235, 251, 481, 1619, 2047
BmcAI AGTACT 1 cut(s) 1962
Bme1390I CCNGG 5 cut(s) 569, 756, 833, 2433, 2438
Bme18I GGWCC 1 cut(s) 752
BmeT110I CYCGRG 1 cut(s) 1478
BmgT120I GGNCC 2 cut(s) 752, 829
BmiI GGNNCC 3 cut(s) 1645, 1687, 2430
BmrFI CCNGG 5 cut(s) 569, 756, 833, 2433, 2438
BmrI ACTGGG 1 cut(s) 74
BmsI GCATC 3 cut(s) 1208, 1538, 2320
BmuI ACTGGG 1 cut(s) 74
BplI GAGNNNNNCTC 2 cut(s) 205, 237
BpmI CTGGAG 1 cut(s) 753
BpuEI CTTGAG 2 cut(s) 886, 1326
Bsa29I ATCGAT 1 cut(s) 375
BsaAI YACGTR 1 cut(s) 194
BsaHI GRCGYC 1 cut(s) 600
BsaI GGTCTC 1 cut(s) 2732
BsaJI CCNNGG 3 cut(s) 831, 1850, 2163
BsaWI WCCGGW 2 cut(s) 1567, 1708
Bsc4I CCNNNNNNNGG 3 cut(s) 902, 1787, 2350
Bse1I ACTGG 4 cut(s) 69, 329, 350, 1689
Bse3DI GCAATG 1 cut(s) 996
BseBI CCWGG 5 cut(s) 569, 756, 833, 2433, 2438
BseCI ATCGAT 1 cut(s) 375
BseDI CCNNGG 3 cut(s) 831, 1850, 2163
BseGI GGATG 8 cut(s) 165, 459, 1576, 1832, 1979, 2335, 2514, 2531
BseLI CCNNNNNNNGG 3 cut(s) 902, 1787, 2350
BseMI GCAATG 1 cut(s) 996
BseMII CTCAG 4 cut(s) 933, 1454, 1693, 2415
BseNI ACTGG 4 cut(s) 69, 329, 350, 1689
BseRI GAGGAG 1 cut(s) 1293
BseXI GCAGC 5 cut(s) 220, 236, 466, 1629, 2057
BsgI GTGCAG 2 cut(s) 73, 2467
Bsh1236I CGCG 1 cut(s) 546
BshFI GGCC 6 cut(s) 356, 567, 830, 895, 1277, 2436
BshVI ATCGAT 1 cut(s) 375
BsiHKAI GWGCWC 1 cut(s) 1494
BsiHKCI CYCGRG 1 cut(s) 1478
BsiSI CCGG 3 cut(s) 827, 1568, 1709
BslFI GGGAC 5 cut(s) 1160, 1709, 2144, 2796, 2909
BslI CCNNNNNNNGG 3 cut(s) 902, 1787, 2350
BsmAI GTCTC 7 cut(s) 51, 1085, 1459, 1874, 1966, 2732, 2838
BsmFI GGGAC 5 cut(s) 1160, 1709, 2144, 2796, 2909
BsnI GGCC 6 cut(s) 356, 567, 830, 895, 1277, 2436
Bso31I GGTCTC 1 cut(s) 2732
BsoBI CYCGRG 1 cut(s) 1478
Bsp1286I GDGCHC 2 cut(s) 223, 1494
Bsp143I GATC 9 cut(s) 42, 100, 419, 658, 736, 1611, 2098, 2200, 2638
Bsp68I TCGCGA 1 cut(s) 546
BspACI CCGC 3 cut(s) 2538, 2734, 2817
BspANI GGCC 6 cut(s) 356, 567, 830, 895, 1277, 2436
BspCNI CTCAG 4 cut(s) 932, 1455, 1692, 2416
BspDI ATCGAT 1 cut(s) 375
BspFNI CGCG 1 cut(s) 546
BspLI GGNNCC 3 cut(s) 1645, 1687, 2430
BspPI GGATC 3 cut(s) 95, 427, 2208
BspTI CTTAAG 1 cut(s) 1964
BspTNI GGTCTC 1 cut(s) 2732
BsrDI GCAATG 1 cut(s) 996
BsrI ACTGG 4 cut(s) 69, 329, 350, 1689
BssECI CCNNGG 3 cut(s) 831, 1850, 2163
BssMI GATC 9 cut(s) 42, 100, 419, 658, 736, 1611, 2098, 2200, 2638
BssNI GRCGYC 1 cut(s) 600
BssSI CACGAG 1 cut(s) 780
BssT1I CCWWGG 2 cut(s) 1850, 2163
Bst2BI CACGAG 1 cut(s) 780
Bst2UI CCWGG 5 cut(s) 569, 756, 833, 2433, 2438
Bst4CI ACNGT 8 cut(s) 289, 941, 1231, 1885, 2008, 2078, 2268, 2849
Bst6I CTCTTC 2 cut(s) 1731, 1851
BstACI GRCGYC 1 cut(s) 600
BstAFI CTTAAG 1 cut(s) 1964
BstAPI GCANNNNNTGC 1 cut(s) 1261
BstBAI YACGTR 1 cut(s) 194
BstC8I GCNNGC 2 cut(s) 876, 1541
BstDEI CTNAG 6 cut(s) 919, 1064, 1463, 1679, 2424, 2727
BstENI CCTNNNNNAGG 1 cut(s) 900
BstF5I GGATG 8 cut(s) 165, 459, 1576, 1832, 1979, 2335, 2514, 2531
BstFNI CGCG 1 cut(s) 546
BstH2I RGCGCY 1 cut(s) 2051
BstHHI GCGC 3 cut(s) 1539, 2050, 2141
BstKTI GATC 9 cut(s) 45, 103, 422, 661, 739, 1614, 2101, 2203, 2641
BstMAI GTCTC 7 cut(s) 51, 1085, 1459, 1874, 1966, 2732, 2838
BstMBI GATC 9 cut(s) 42, 100, 419, 658, 736, 1611, 2098, 2200, 2638
BstMWI GCNNNNNNNGC 3 cut(s) 485, 1261, 2809
BstNI CCWGG 5 cut(s) 569, 756, 833, 2433, 2438
BstNSI RCATGY 4 cut(s) 113, 878, 2402, 2762
BstSCI CCNGG 5 cut(s) 567, 754, 831, 2431, 2436
BstSFI CTRYAG 2 cut(s) 1861, 2519
BstUI CGCG 1 cut(s) 546
BstV1I GCAGC 5 cut(s) 220, 236, 466, 1629, 2057
BstX2I RGATCY 1 cut(s) 2200
BstYI RGATCY 1 cut(s) 2200
Bsu15I ATCGAT 1 cut(s) 375
BsuRI GGCC 6 cut(s) 356, 567, 830, 895, 1277, 2436
BsuTUI ATCGAT 1 cut(s) 375
BtsCI GGATG 8 cut(s) 165, 459, 1576, 1832, 1979, 2335, 2514, 2531
BtsI GCAGTG 2 cut(s) 215, 634
BtuMI TCGCGA 1 cut(s) 546
Cac8I GCNNGC 2 cut(s) 876, 1541
CaiI CAGNNNCTG 1 cut(s) 233
CfoI GCGC 3 cut(s) 1539, 2050, 2141
Cfr13I GGNCC 2 cut(s) 752, 829
ClaI ATCGAT 1 cut(s) 375
Csp6I GTAC 3 cut(s) 680, 1434, 1961
CviQI GTAC 3 cut(s) 680, 1434, 1961
DdeI CTNAG 6 cut(s) 919, 1064, 1463, 1679, 2424, 2727
DpnI GATC 9 cut(s) 44, 102, 421, 660, 738, 1613, 2100, 2202, 2640
DpnII GATC 9 cut(s) 42, 100, 419, 658, 736, 1611, 2098, 2200, 2638
EaeI YGGCCR 2 cut(s) 354, 1275
Eam1104I CTCTTC 2 cut(s) 1731, 1851
EarI CTCTTC 2 cut(s) 1731, 1851
Ecl136II GAGCTC 1 cut(s) 1492
Eco130I CCWWGG 2 cut(s) 1850, 2163
Eco147I AGGCCT 1 cut(s) 2436
Eco24I GRGCYC 2 cut(s) 223, 1494
Eco31I GGTCTC 1 cut(s) 2732
Eco47I GGWCC 1 cut(s) 752
Eco53kI GAGCTC 1 cut(s) 1492
Eco57I CTGAAG 5 cut(s) 1062, 1401, 1640, 2074, 2221
Eco72I CACGTG 1 cut(s) 194
Eco88I CYCGRG 1 cut(s) 1478
EcoICRI GAGCTC 1 cut(s) 1492
EcoNI CCTNNNNNAGG 1 cut(s) 900
EcoRII CCWGG 5 cut(s) 567, 754, 831, 2431, 2436
EcoT14I CCWWGG 2 cut(s) 1850, 2163
EcoT22I ATGCAT 1 cut(s) 1257
EcoT38I GRGCYC 2 cut(s) 223, 1494
ErhI CCWWGG 2 cut(s) 1850, 2163
FalI AAGNNNNNCTT 6 cut(s) 573, 605, 894, 926, 1792, 1824
FaqI GGGAC 5 cut(s) 1160, 1709, 2144, 2796, 2909
FauI CCCGC 2 cut(s) 2727, 2810
FauNDI CATATG 4 cut(s) 1118, 1452, 2068, 2472
FbaI TGATCA 1 cut(s) 2098
Fnu4HI GCNGC 5 cut(s) 234, 250, 480, 1618, 2046
FokI GGATG 8 cut(s) 152, 466, 1583, 1839, 1966, 2342, 2501, 2538
FriOI GRGCYC 2 cut(s) 223, 1494
Fsp4HI GCNGC 5 cut(s) 234, 250, 480, 1618, 2046
FspBI CTAG 6 cut(s) 956, 1085, 1422, 1595, 2631, 2888
GlaI GCGC 3 cut(s) 1538, 2049, 2140
GluI GCNGC 5 cut(s) 234, 250, 480, 1618, 2046
GsuI CTGGAG 1 cut(s) 753
HaeII RGCGCY 1 cut(s) 2051
HaeIII GGCC 6 cut(s) 356, 567, 830, 895, 1277, 2436
HapII CCGG 3 cut(s) 827, 1568, 1709
HhaI GCGC 3 cut(s) 1539, 2050, 2141
Hin1I GRCGYC 1 cut(s) 600
Hin6I GCGC 3 cut(s) 1537, 2048, 2139
HinP1I GCGC 3 cut(s) 1537, 2048, 2139
HincII GTYRAC 1 cut(s) 1991
HindII GTYRAC 1 cut(s) 1991
HindIII AAGCTT 5 cut(s) 1072, 1835, 2086, 2233, 2252
HpaII CCGG 3 cut(s) 827, 1568, 1709
HphI GGTGA 7 cut(s) 1342, 1698, 1769, 1825, 2069, 2098, 2108
Hpy166II GTNNAC 5 cut(s) 560, 814, 1214, 1816, 1991
Hpy8I GTNNAC 5 cut(s) 560, 814, 1214, 1816, 1991
Hpy99I CGWCG 2 cut(s) 542, 894
HpyAV CCTTC 8 cut(s) 114, 896, 1037, 1073, 1093, 1385, 1817, 2645
HpyCH4III ACNGT 8 cut(s) 289, 941, 1231, 1885, 2008, 2078, 2268, 2849
HpyCH4IV ACGT 4 cut(s) 193, 540, 600, 1485
HpyF10VI GCNNNNNNNGC 3 cut(s) 485, 1261, 2809
HpyF3I CTNAG 6 cut(s) 919, 1064, 1463, 1679, 2424, 2727
HpySE526I ACGT 4 cut(s) 193, 540, 600, 1485
Hsp92I GRCGYC 1 cut(s) 600
HspAI GCGC 3 cut(s) 1537, 2048, 2139
Ksp22I TGATCA 1 cut(s) 2098
Kzo9I GATC 9 cut(s) 42, 100, 419, 658, 736, 1611, 2098, 2200, 2638
Lsp1109I GCAGC 5 cut(s) 220, 236, 466, 1629, 2057
LweI GCATC 3 cut(s) 1208, 1538, 2320
MaeI CTAG 6 cut(s) 956, 1085, 1422, 1595, 2631, 2888
MaeII ACGT 4 cut(s) 193, 540, 600, 1485
MaeIII GTNAC 6 cut(s) 1153, 1225, 1348, 1829, 2126, 2477
MalI GATC 9 cut(s) 44, 102, 421, 660, 738, 1613, 2100, 2202, 2640
MboI GATC 9 cut(s) 42, 100, 419, 658, 736, 1611, 2098, 2200, 2638
MflI RGATCY 1 cut(s) 2200
MhlI GDGCHC 2 cut(s) 223, 1494
MlsI TGGCCA 2 cut(s) 356, 1277
MluNI TGGCCA 2 cut(s) 356, 1277
MlyI GAGTC 5 cut(s) 1797, 2166, 2185, 2535, 2653
MmeI TCCRAC 2 cut(s) 349, 421
Mox20I TGGCCA 2 cut(s) 356, 1277
Mph1103I ATGCAT 1 cut(s) 1257
MroXI GAANNNNTTC 4 cut(s) 144, 376, 906, 1512
MscI TGGCCA 2 cut(s) 356, 1277
MslI CAYNNNNRTG 2 cut(s) 2403, 2763
Msp20I TGGCCA 2 cut(s) 356, 1277
MspA1I CMGCKG 2 cut(s) 479, 2498
MspCI CTTAAG 1 cut(s) 1964
MspI CCGG 3 cut(s) 827, 1568, 1709
MspR9I CCNGG 5 cut(s) 569, 756, 833, 2433, 2438
MvaI CCWGG 5 cut(s) 569, 756, 833, 2433, 2438
MvnI CGCG 1 cut(s) 546
MwoI GCNNNNNNNGC 3 cut(s) 485, 1261, 2809
NdeI CATATG 4 cut(s) 1118, 1452, 2068, 2472
NdeII GATC 9 cut(s) 42, 100, 419, 658, 736, 1611, 2098, 2200, 2638
NlaIV GGNNCC 3 cut(s) 1645, 1687, 2430
NmuCI GTSAC 4 cut(s) 1153, 1348, 1829, 2126
NruI TCGCGA 1 cut(s) 546
NsiI ATGCAT 1 cut(s) 1257
NspI RCATGY 4 cut(s) 113, 878, 2402, 2762
PaeI GCATGC 1 cut(s) 878
PaeR7I CTCGAG 1 cut(s) 1478
PceI AGGCCT 1 cut(s) 2436
PciI ACATGT 2 cut(s) 109, 2758
PdmI GAANNNNTTC 4 cut(s) 144, 376, 906, 1512
PflFI GACNNNGTC 1 cut(s) 1151
PfoI TCCNGGA 1 cut(s) 754
PkrI GCNGC 5 cut(s) 235, 251, 481, 1619, 2047
PleI GAGTC 5 cut(s) 1797, 2165, 2184, 2535, 2653
PmaCI CACGTG 1 cut(s) 194
PmlI CACGTG 1 cut(s) 194
PpsI GAGTC 5 cut(s) 1797, 2165, 2184, 2535, 2653
Ppu21I YACGTR 1 cut(s) 194
PscI ACATGT 2 cut(s) 109, 2758
PshBI ATTAAT 1 cut(s) 1674
PsiI TTATAA 2 cut(s) 293, 2708
Psp124BI GAGCTC 1 cut(s) 1494
Psp6I CCWGG 5 cut(s) 567, 754, 831, 2431, 2436
PspCI CACGTG 1 cut(s) 194
PspGI CCWGG 5 cut(s) 567, 754, 831, 2431, 2436
PspN4I GGNNCC 3 cut(s) 1645, 1687, 2430
PspPI GGNCC 2 cut(s) 752, 829
PstNI CAGNNNCTG 1 cut(s) 233
PsuI RGATCY 1 cut(s) 2200
PsyI GACNNNGTC 1 cut(s) 1151
PvuII CAGCTG 2 cut(s) 479, 2498
RruI TCGCGA 1 cut(s) 546
RsaI GTAC 3 cut(s) 681, 1435, 1962
RsaNI GTAC 3 cut(s) 680, 1434, 1961
RseI CAYNNNNRTG 2 cut(s) 2403, 2763
SacI GAGCTC 1 cut(s) 1494
SatI GCNGC 5 cut(s) 234, 250, 480, 1618, 2046
Sau3AI GATC 9 cut(s) 42, 100, 419, 658, 736, 1611, 2098, 2200, 2638
Sau96I GGNCC 2 cut(s) 752, 829
ScaI AGTACT 1 cut(s) 1962
SchI GAGTC 5 cut(s) 1797, 2166, 2185, 2535, 2653
ScrFI CCNGG 5 cut(s) 569, 756, 833, 2433, 2438
SduI GDGCHC 2 cut(s) 223, 1494
SfaNI GCATC 3 cut(s) 1208, 1538, 2320
SfcI CTRYAG 2 cut(s) 1861, 2519
Sfr274I CTCGAG 1 cut(s) 1478
SinI GGWCC 1 cut(s) 752
SlaI CTCGAG 1 cut(s) 1478
SmiMI CAYNNNNRTG 2 cut(s) 2403, 2763
SmlI CTYRAG 4 cut(s) 865, 1341, 1478, 1964
SmoI CTYRAG 4 cut(s) 865, 1341, 1478, 1964
SpeI ACTAGT 1 cut(s) 1594
SphI GCATGC 1 cut(s) 878
SseBI AGGCCT 1 cut(s) 2436
SsiI CCGC 3 cut(s) 2538, 2734, 2817
SspI AATATT 2 cut(s) 87, 2195
SspMI CTAG 6 cut(s) 956, 1085, 1422, 1595, 2631, 2888
SstI GAGCTC 1 cut(s) 1494
StuI AGGCCT 1 cut(s) 2436
StyD4I CCNGG 5 cut(s) 567, 754, 831, 2431, 2436
StyI CCWWGG 2 cut(s) 1850, 2163
TaaI ACNGT 8 cut(s) 289, 941, 1231, 1885, 2008, 2078, 2268, 2849
TaiI ACGT 4 cut(s) 196, 543, 603, 1488
TaqI TCGA 6 cut(s) 14, 332, 375, 889, 963, 1479
TatI WGTACW 2 cut(s) 1433, 1960
TseFI GTSAC 4 cut(s) 1153, 1348, 1829, 2126
TseI GCWGC 5 cut(s) 233, 249, 479, 1617, 2045
Tsp45I GTSAC 4 cut(s) 1153, 1348, 1829, 2126
Tth111I GACNNNGTC 1 cut(s) 1151
Vha464I CTTAAG 1 cut(s) 1964
VpaK11BI GGWCC 1 cut(s) 752
VspI ATTAAT 1 cut(s) 1674
XagI CCTNNNNNAGG 1 cut(s) 900
XapI RAATTY 7 cut(s) 238, 444, 501, 1178, 2314, 2321, 2550
XceI RCATGY 4 cut(s) 113, 878, 2402, 2762
XhoI CTCGAG 1 cut(s) 1478
XmnI GAANNNNTTC 4 cut(s) 144, 376, 906, 1512
XspI CTAG 6 cut(s) 956, 1085, 1422, 1595, 2631, 2888
ZraI GACGTC 1 cut(s) 601
ZrmI AGTACT 1 cut(s) 1962
Zsp2I ATGCAT 1 cut(s) 1257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.