FvH4_5g32050

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
23123415 .. 23127678
4264 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g32050.t1

Sequence Viewer

Length: 3624 bp
ATGCTACCTACCATGACAACTCATGAGGCCTCCTCTTCATCCTCAAAACGCTGGACTTATGATGTGTTCTTGAGCTTTAACGGTGATGACACTCGCAAATCCTTCACTGGCCATCTCTACGCGAGATTAAAAGAGGCTGGAGTAAACACCTTTATTGATGACTGCTACGAGCTAAGAAGAGGGGAGAAAATAAAAGAAAAACTGGTTCAAGCAATCGAAGGGTCTAAGATCTCGGTGATTGTTTTCTCAAGGAGGTATGCCGCTTCCAGTTGGTGTCTTGAGGAGCTGGTGGAGATACTTGGGTGTCGAAAAAGGAGTGGCCAAATGGTTATGCCAATATTTTTTGATGTTGATCCTACAGATGTTAGGAACCACACTGGTTCTTTTGGCGAGGCCTTTTATCACAAGCATCAGGATATAGATAAAGATAAGCTACAGGGGTGGAAAGGTGCTCTTACAGAGGCTGCAAATTTGTCTGGCTGGGATCTCAGGAACACTGCCAATGGGCATGAAGCAACTTTCATTCAGAAAGTTGTTGAACAGATTACCAGAGAGCTTCCCAGCACATATTTATTATCCATAGCCCAACATCCAGTTGGAGTAAACTCTCGTTTGCATGATTTGATTTCTTGTTTGCATTTTGAAGCAAGAGATGATGTTCGCATTAGCGGAATATTAGGGATGGGTGGCATAGGTAAAACAACACTTGCCAAAGCCATAGGTAACAAATTTTATCGGGACTTTCAAGGGAAAGTTAGTTTCCTTGAAAATGTGAGGGAATCTACAAAGCAACTGAATGGTCTGGTTGGTTTGCAAAATCAACTTCTAGCTGATATCTTGAAACCAACCAAGCTTGACGTTGGCATTGTTGATAGAGGGAAGGAAGTTATAAAACAAAGACTTCAATACATGAGGGTGCTTATCATAATTGACGATGTTGATGATGAGGATCAACTTAATGCATTAGCTGGAAACTGTGATTGGTTTGGTCCAGGAAGTAGAATTATTATAACAACAAGAAATGTGCATTTGCTAAAAGGAGTTACCAAGGATTCAATATATCGGGTTCGACCAATGCACAAAGTTGAATCTCTTCAGCTCTTTTGCTGGCATGCCTTCCGTGATAGTAGTTATCCTAAGGAAGGTTATCTTGAACTCTCAGAAAGGGCAGTTTCTTATTGTGCAGGGTTGCCGCTTGCTCTTAAAGTTATAGGTTCTTTTCTATTCGGTAAAGACACTCATGACTGGGAGGCGCATTTGAAAAAATTAAAAAGAATTCCTGACGACCAAATTGTGCAAAAGCTCAGATTGTGCTATGATGGGCTAAGTGAAAGGCATCGAGAGAAGGACATATTTCTTGACATAGCTTGTTTCTTTATTGGAATGGACAAGAATTATGTCACAAAAATACTGGATGGATGTGACTTCTTTGCAGGTATAGGAATCAGAGTCCTCCTTGATCGGTGCCTTGTAACTCTTAGTACACTGAACAAGCTGACGATGCATGATTTGCTTCAAGACATGGGCAGAGAGATTGTCTGTGAAAAGTATCGGGATGAGCCTGAAAAACGCAGTAGATTATGGCATCCCAAAGATGTAGAAGAAGTCTTGACAGAAACCTCAGCTACTGAAGAAATTGAAGGATTAAGTACTCTAAACTTTTTAAAACCTGAAGTGAGGAGTTTCAGTACAGAGGCCTTTATAAAAATGAAAAGATTGAGATTACTTCGACTTAACCATGTCAGTCTAACCGGAGACTACAAATATCTTTCCAAGAAAAAGCTAATATGGCTTTGCTGGCATGGATTCCCTCTAGTGGTTATACCAAGAGAATTTGATCTACGAAGCCTAGTTGTTATAGACCTACGCTATAGCAAACTCACAGATTTTTGGGGCGATCCTCAGTACGTTCTTGAGAAGTTGAAGATTCTTAATCTCAGTCATTCACATGACCTAATGCATTCACCTGACTTTTCAAGGCTACCAAATCTTGAGCAATTGATACTCAAAGACTGTAAGAGTTTGTGTGAGGTTCATCAGTCTATTGGCACTCTTCAACGCCTTTGTTTGGTAAATCTTAAAGACTGCAAAATGCTCAAGTGTCTCCCAAGGAGTTTTGGTAGATTGAAATTTACTCTTGAAACACTTGATCTTTCCGGAACAAACTTGGCTGGGAGCTTATTGGAGATCGTTTCATCAAGAACTCGGCATGCAGATGAGACTGCTGTTACAAATATACCAAGACCATCTTCCATAGTTCGACTTGAAGGATCATCATTCTATGCATTAAGAGATTTAAATCTTAGTGAGTGCAATTTAACTGATGATTCAATATTTGTAAACCTTCAGGGCCTATCATTGGATTACTTGGATCTTACGTGCAATGGTTTCCGTAGTCTTAATAACCTCAGTGGCCTTAAGGTTAGGATGCTGATATTGAATGAGTGCGAAGACCTTCTTGCAATCACAGATTTGCCGGTAAACTTGAACTACTTATCTCTGACACACTGCATTTCATTGGAGATGGTACCAAATTATTCATACGACTCTTTCCCTCATCCCATAGAACTAGAAATGTGGAACTGCCCCGAGCTGATTGACTTTCCAGGTTTGGTTGACTGGGTAGAGGGTCTGGCAGTTATTGCATTTGGGGGACACTACAACAATATCCCCTCTCCTCTGAAGAAGGCCATCCTACAGGAATGGAGATTGATTCAAGGTGGTGGCCTTTCTTTCCCTGCAAATGAGGTTCCTTGGTGGTGTTCTCATGTCAATCATAGAGGTCGCCAAGTCTGTTTCAAAATGCTGTCGGGAAGGGATATAGCCTTTTTTGTGTGCTTTGTTTACTCTTCCTCTTTAAGCGACTGTGACTGTGATCTGTCGAATGAGAGTCATGAGACTGGAATGTTTGTTGTAAATCATACTAGGCGGACCGCCTTTTTTGTCCGCCTATGGGACATTATAGCAACCGATTCCAATGAAAACTATATTTGGCTATGCAATATGCTACTGCAGGATGGATTATATTTGGAAGGTGGTGACTGTATCAGCCTTGGAGTAGTACTGGGAGATTGTTTTAAGGTTCACCAAATAGGAGTTGAACTAATAAAGGATCACATGCCATTCTATTGCGAAGCAAAAGTATTCACGAAATGTATCCCATACAAGGAGGGATTAGATTATCTTCTTGATGATGATACTGATGACAGTGTTGATGAGGCAGGAGCAAGCTACAACCCATTTGATGCTGCTAATGGAATTATTGGTCATTATGGTGAAGATGATGTGGGAGGAGAAAGAAGTGATCCAGTTGATGAGGACCGGCCTACCAAGAAATTGAGGAGGTCTGATCATAGTATCGTAACGATAAGTAAGGATGACCAATTAGGGTTCACATCTTCTCCATTACATGCTTGTTTTGATCCGACTCAGATCTCATCTTCATCTCAGGGAGGACCAGAAAATGTCTATCACCAGCAAGAAATGCTAATCCAACAACTGCAATCTGAGAATAAGGAGTTGCTAAGACAGTTGATACTATTACAACAGCCAAATCAGATTCTAGTTGAAAGAAACTTCTCGCAACAGTTTGAAGAGATCACTAGATCAGATGACAGACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1208

Amino Acids

137.42

Weight (kDa)

5.74

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 20 - 188 3.6e-50 TIR domain
TIR_2 PF13676 22 - 119 8e-16 TIR domain
NB-ARC PF00931 217 - 375 8.7e-16 NB-ARC domain
NACHT PF05729 225 - 369 8.9e-06 NACHT domain
WHD_ROQ1 PF23282 447 - 515 4.4e-19 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36930 AT5G36930 AT5G36930 AT5G36930
fragaria_vesca FvH4_3g45361 FvH4_3g45380 FvH4_5g21061 FvH4_5g21062 FvH4_5g21063 FvH4_5g32050 FvH4_5g32970 FvH4_5g32990 FvH4_5g34190 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34211 FvH4_5g34240 FvH4_5g34250
malus_domestica MD00G1011700.v1.1 MD00G1026100.v1.1 MD00G1026500.v1.1 MD00G1027000.v1.1 MD00G1027100.v1.1 MD00G1027700.v1.1 MD00G1027800.v1.1 MD00G1028000.v1.1 MD00G1220000.v1.1 MD02G1024400.v1.1 MD02G1024800.v1.1 MD02G1026000.v1.1 MD02G1026100.v1.1 MD02G1031800.v1.1 MD02G1038500.v1.1 MD02G1038700.v1.1 MD02G1039200.v1.1 MD02G1040600.v1.1 MD02G1040900.v1.1 MD02G1041200.v1.1 MD02G1041300.v1.1 MD02G1041700.v1.1 MD02G1042000.v1.1 MD02G1043800.v1.1 MD02G1043900.v1.1 MD02G1044300.v1.1 MD02G1045200.v1.1 MD02G1045300.v1.1 MD02G1051200.v1.1 MD02G1052200.v1.1 MD02G1052800.v1.1 MD02G1053100.v1.1 MD02G1053600.v1.1 MD02G1055500.v1.1 MD02G1063300.v1.1 MD02G1063400.v1.1 MD02G1063800.v1.1 MD02G1306500.v1.1 MD02G1306600.v1.1 MD02G1306700.v1.1 MD02G1306900.v1.1 MD02G1307200.v1.1 MD04G1011700.v1.1 MD05G1315400.v1.1 MD05G1316000.v1.1 MD05G1316700.v1.1 MD05G1317000.v1.1 MD05G1317300.v1.1 MD05G1317600.v1.1 MD05G1317700.v1.1 MD07G1102800.v1.1 MD07G1238200.v1.1 MD08G1175900.v1.1 MD08G1203600.v1.1 MD09G1024200.v1.1 MD09G1039600.v1.1 MD09G1044800.v1.1 MD09G1045100.v1.1 MD10G1038700.v1.1 MD10G1039000.v1.1 MD10G1039200.v1.1 MD10G1040000.v1.1 MD10G1040200.v1.1 MD10G1040600.v1.1 MD10G1040800.v1.1 MD10G1297300.v1.1 MD12G1247500.v1.1 MD12G1247900.v1.1 MD12G1248300.v1.1 MD12G1248800.v1.1 MD15G1103700.v1.1 MD15G1103800.v1.1 MD15G1104000.v1.1 MD15G1179600.v1.1 MD15G1182500.v1.1 MD16G1068200.v1.1 MD16G1068300.v1.1 MD17G1024600.v1.1 MD17G1024700.v1.1 MD17G1025000.v1.1 MD17G1025900.v1.1
prunus_persica Prupe.1G539800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G557100_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557300_v2.0.a1
pyrus_communis pycom02g02080 pycom02g02090 pycom02g02110 pycom02g03220 pycom02g03260 pycom02g03370 pycom02g03390 pycom02g03410 pycom02g03420 pycom02g03450 pycom02g03500 pycom02g03730 pycom02g03770 pycom02g04400 pycom02g04410 pycom02g04430 pycom02g04450 pycom02g04460 pycom02g04490 pycom02g05200 pycom02g25710 pycom02g25750 pycom02g25790 pycom02g25810 pycom02g25830 pycom04g00920 pycom04g00930 pycom04g00940 pycom05g29300 pycom05g29310 pycom05g29380 pycom05g29410 pycom07g06310 pycom07g21420 pycom08g15070 pycom08g17540 pycom08g17560 pycom08g17570 pycom10g02670 pycom10g02680 pycom10g02700 pycom10g02770 pycom10g02790 pycom10g02800 pycom10g02810 pycom10g25020 pycom10g25030 pycom10g25050 pycom10g25080 pycom111g01990 pycom111g02000 pycom111g02030 pycom111g02040 pycom111g02050 pycom111g02060 pycom12g22710 pycom12g22720 pycom12g22730 pycom12g22740 pycom12g22750 pycom12g22770 pycom12g22780 pycom12g22790 pycom12g22800 pycom12g22810 pycom12g22830 pycom12g22840 pycom12g22860 pycom15g09440 pycom15g09480 pycom15g16120 pycom15g32380 pycom16g05970 pycom17g02100
rosa_chinensis RchiOBHm_Chr2g0144661 RchiOBHm_Chr4g0407491 RchiOBHm_Chr4g0407501 RchiOBHm_Chr4g0412381 RchiOBHm_Chr7g0208191 RchiOBHm_Chr7g0208201 RchiOBHm_Chr7g0208211 RchiOBHm_Chr7g0208221 RchiOBHm_Chr7g0228071 RchiOBHm_Chr7g0228121 RchiOBHm_Chr7g0230971 RchiOBHm_Chr7g0230981 RchiOBHm_Chr7g0233901 RchiOBHm_Chr7g0233951 RchiOBHm_Chr7g0233961 RchiOBHm_Chr7g0233991 RchiOBHm_Chr7g0234021 RchiOBHm_Chr7g0234151 RchiOBHm_Chr7g0234161 RchiOBHm_Chr7g0234241 RchiOBHm_Chr7g0234501 RchiOBHm_Chr7g0234641 RchiOBHm_Chr7g0234771 RchiOBHm_Chr7g0234781 RchiOBHm_Chr7g0234991 RchiOBHm_Chr7g0241291 RchiOBHm_Chr7g0241301
rosa_laevigata RLG00000001186 RLG00000001187 RLG00000001212 RLG00000001226 RLG00000001233 RLG00000001590 RLG00000003242 RLG00000003243 RLG00000003249 RLG00000008688 RLG00000008690
rosa_multiflora Rmu_co7966574.1_g000001 Rmu_co8120830.1_g000001 Rmu_co8142226.1_g000001 Rmu_co8293083.1_g000001 Rmu_co8351227.1_g000001 Rmu_co8380159.1_g000001 Rmu_co8456505.1_g000001 Rmu_sc0000676.1_g000025 Rmu_sc0000706.1_g000018 Rmu_sc0000706.1_g000040 Rmu_sc0000740.1_g000029 Rmu_sc0000740.1_g000032 Rmu_sc0000740.1_g000037 Rmu_sc0000740.1_g000040 Rmu_sc0000762.1_g000003 Rmu_sc0000762.1_g000019 Rmu_sc0000762.1_g000034 Rmu_sc0000762.1_g000069 Rmu_sc0000892.1_g000001 Rmu_sc0000945.1_g000040 Rmu_sc0001913.1_g000037 Rmu_sc0001913.1_g000041 Rmu_sc0001913.1_g000049 Rmu_sc0002775.1_g000017 Rmu_sc0002775.1_g000018 Rmu_sc0002775.1_g000020 Rmu_sc0002775.1_g000021 Rmu_sc0002775.1_g000022 Rmu_sc0002775.1_g000025 Rmu_sc0002775.1_g000026 Rmu_sc0002775.1_g000028 Rmu_sc0002775.1_g000030 Rmu_sc0004858.1_g000002 Rmu_sc0004864.1_g000022 Rmu_sc0005038.1_g000023 Rmu_sc0005840.1_g000014 Rmu_sc0006724.1_g000003 Rmu_sc0006824.1_g000005 Rmu_sc0007869.1_g000003 Rmu_sc0007869.1_g000005 Rmu_sc0007869.1_g000008 Rmu_sc0008646.1_g000007 Rmu_sc0009637.1_g000009 Rmu_sc0010500.1_g000002 Rmu_sc0010500.1_g000012 Rmu_sc0012403.1_g000025 Rmu_sc0013768.1_g000025 Rmu_sc0015625.1_g000001 Rmu_sc0019715.1_g000001 Rmu_sc0021133.1_g000002 Rmu_sc0021904.1_g000001 Rmu_sc0021904.1_g000003 Rmu_sc0021904.1_g000004 Rmu_sc0022054.1_g000001 Rmu_sc0026025.1_g000001 Rmu_sc0036828.1_g000002 Rmu_sc0041808.1_g000001 Rmu_ssc0000012.1_g000001
rosa_roxburghii Rroxscaffold_3G00226370 Rroxscaffold_3G00226860 Rroxscaffold_3G00226900 Rroxscaffold_3G00226930 Rroxscaffold_3G00226940 Rroxscaffold_3G00226970 Rroxscaffold_3G00226980 Rroxscaffold_3G00231530 Rroxscaffold_3G00237090 Rroxscaffold_3G00250760 Rroxscaffold_3G00250800
rosa_rugosa Rorug04G0082300 Rorug07G0101800 Rorug07G0102000 Rorug07G0102100 Rorug07G0221200 Rorug07G0245700 Rorug07G0245700 Rorug07G0245700 Rorug07G0263900 Rorug07G0264000 Rorug07G0264000 Rorug07G0264500 Rorug07G0282900 Rorug07G0282900 Rorug07G0283100 Rorug07G0283200.1 Rorug07G0283300 Rorug07G0283900 Rorug07G0284000 Rorug07G0284100 Rorug07G0284300 Rorug07G0284400 Rorug07G0284500 Rorug07G0285000 Rorug07G0285200 Rorug07G0285300 Rorug07G0285500 Rorug07G0286800 Rorug07G0286900 Rorug07G0287100 Rorug07G0287200
rosa_samantha Rh7AG236100 Rh7AG236200 Rh7AG236300 Rh7AG440000 Rh7AG440100 Rh7BG411900 Rh7BG412000 Rh7BG412600 Rh7CG251300 Rh7CG417700 Rh7CG460100 Rh7DG242100 Rh7DG242200 Rh7DG242300 Rh7DG429300
rosa_wichuraiana Rw0G005070 Rw0G010780 Rw0G012530 Rw7G020110 Rw7G020160 Rw7G020170 Rw7G033210 Rw7G033230 Rw7G033250 Rw7G034540 Rw7G035150 Rw7G036190 Rw7G036210 Rw7G036260 Rw7G036270 Rw7G036290 Rw7G036300 Rw7G036310 Rw7G036350 Rw7G036360 Rw7G036440 Rw7G036510 Rw7G036530 Rw7G036570 Rw7G036590 Rw7G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 890, 1010, 1703
Acc36I ACCTGC 1 cut(s) 1424
Acc65I GGTACC 1 cut(s) 2527
AccB1I GGYRCC 2 cut(s) 1464, 2527
AccII CGCG 1 cut(s) 122
AccIII TCCGGA 1 cut(s) 2156
AciI CCGC 6 cut(s) 261, 669, 1193, 2929, 2934, 2947
AclWI GGATC 9 cut(s) 347, 492, 957, 1892, 2278, 2379, 3120, 3299, 3416
AcoI YGGCCR 2 cut(s) 109, 319
AcsI RAATTY 5 cut(s) 469, 728, 1275, 1832, 2129
AcuI CTGAAG 5 cut(s) 1079, 1650, 1692, 2330, 2702
AfaI GTAC 6 cut(s) 1483, 1651, 1690, 1907, 2529, 3063
AfiI CCNNNNNNNGG 6 cut(s) 1142, 1816, 2068, 2359, 2953, 3166
AflII CTTAAG 1 cut(s) 2417
AjnI CCWGG 2 cut(s) 991, 2605
AjuI GAANNNNNNNTTGG 4 cut(s) 964, 996, 2233, 2265
Alw21I GWGCWC 1 cut(s) 454
Alw26I GTCTC 4 cut(s) 1749, 2108, 2213, 2891
AlwI GGATC 9 cut(s) 347, 492, 957, 1892, 2278, 2379, 3120, 3299, 3416
AlwNI CAGNNNCTG 2 cut(s) 464, 1628
Ama87I CYCGRG 1 cut(s) 2588
Aor13HI TCCGGA 1 cut(s) 2156
ApeKI GCWGC 2 cut(s) 464, 3248
ApoI RAATTY 5 cut(s) 469, 728, 1275, 1832, 2129
Asp700I GAANNNNTTC 2 cut(s) 1092, 2454
Asp718I GGTACC 1 cut(s) 2527
AspLEI GCGC 1 cut(s) 1255
AspS9I GGNCC 5 cut(s) 989, 2350, 2931, 3319, 3455
AsuHPI GGTGA 7 cut(s) 95, 247, 1956, 3050, 3077, 3287, 3464
AvaI CYCGRG 1 cut(s) 2588
AvaII GGWCC 4 cut(s) 989, 2931, 3319, 3455
AxyI CCTNAGG 1 cut(s) 1137
BaeI ACNNNNGTAYC 2 cut(s) 287, 320
BalI TGGCCA 2 cut(s) 111, 321
BanI GGYRCC 2 cut(s) 1464, 2527
BbsI GAAGAC 1 cut(s) 2457
Bbv12I GWGCWC 1 cut(s) 454
BbvCI CCTCAGC 1 cut(s) 1621
BbvI GCAGC 2 cut(s) 451, 3235
BccI CCATC 8 cut(s) 120, 676, 1313, 1409, 2254, 2518, 2699, 3011
BciT130I CCWGG 2 cut(s) 993, 2607
BciVI GTATCC 1 cut(s) 3167
BclI TGATCA 1 cut(s) 3349
BcoDI GTCTC 4 cut(s) 1749, 2108, 2213, 2891
BfaI CTAG 7 cut(s) 827, 1814, 1850, 2570, 2925, 3563, 3603
BfmI CTRYAG 5 cut(s) 357, 434, 1870, 2696, 3011
BfrI CTTAAG 1 cut(s) 2417
BfuAI ACCTGC 1 cut(s) 1424
BfuI GTATCC 1 cut(s) 3167
BglII AGATCT 2 cut(s) 228, 3432
BisI GCNGC 4 cut(s) 261, 465, 1193, 3249
BlsI GCNGC 4 cut(s) 262, 466, 1194, 3250
BmcAI AGTACT 2 cut(s) 1651, 3063
Bme1390I CCNGG 2 cut(s) 993, 2607
Bme18I GGWCC 4 cut(s) 989, 2931, 3319, 3455
BmeT110I CYCGRG 1 cut(s) 2588
BmgT120I GGNCC 5 cut(s) 989, 2350, 2931, 3319, 3455
BmiI GGNNCC 4 cut(s) 371, 1466, 2529, 2751
BmrFI CCNGG 2 cut(s) 993, 2607
BmrI ACTGGG 3 cut(s) 1255, 2629, 3074
BmsI GCATC 6 cut(s) 418, 1345, 1491, 1594, 2418, 3235
BmuI ACTGGG 3 cut(s) 1255, 2629, 3074
BpiI GAAGAC 1 cut(s) 2457
BplI GAGNNNNNCTC 2 cut(s) 17, 49
BpmI CTGGAG 1 cut(s) 159
Bpu10I CCTNAGC 1 cut(s) 1621
BpuEI CTTGAG 6 cut(s) 91, 232, 299, 1934, 2012, 2081
BsaAI YACGTR 1 cut(s) 2379
BsaBI GATNNNNATC 3 cut(s) 351, 948, 2298
BsaJI CCNNGG 4 cut(s) 1047, 2108, 2753, 3052
BsaWI WCCGGW 2 cut(s) 1751, 2156
BsaXI ACNNNNNCTCC 6 cut(s) 1672, 1702, 2104, 2134, 3385, 3415
Bsc4I CCNNNNNNNGG 6 cut(s) 1142, 1816, 2068, 2359, 2953, 3166
Bse118I RCCGGY 2 cut(s) 2476, 3321
Bse21I CCTNAGG 1 cut(s) 1137
Bse3DI GCAATG 1 cut(s) 2389
Bse8I GATNNNNATC 3 cut(s) 351, 948, 2298
BseAI TCCGGA 1 cut(s) 2156
BseBI CCWGG 2 cut(s) 993, 2607
BseDI CCNNGG 4 cut(s) 1047, 2108, 2753, 3052
BseJI GATNNNNATC 3 cut(s) 351, 948, 2298
BseLI CCNNNNNNNGG 6 cut(s) 1142, 1816, 2068, 2359, 2953, 3166
BseMI GCAATG 1 cut(s) 2389
BseRI GAGGAG 6 cut(s) 22, 296, 1693, 2667, 3306, 3355
BseXI GCAGC 2 cut(s) 451, 3235
BseYI CCCAGC 3 cut(s) 480, 560, 2171
BsgI GTGCAG 1 cut(s) 1203
Bsh1236I CGCG 1 cut(s) 122
BshNI GGYRCC 2 cut(s) 1464, 2527
BsiHKAI GWGCWC 1 cut(s) 454
BsiHKCI CYCGRG 1 cut(s) 2588
BsiSI CCGG 4 cut(s) 1752, 2157, 2477, 3322
BslFI GGGAC 3 cut(s) 752, 2667, 2969
BslI CCNNNNNNNGG 6 cut(s) 1142, 1816, 2068, 2359, 2953, 3166
BsmAI GTCTC 4 cut(s) 1749, 2108, 2213, 2891
BsmFI GGGAC 3 cut(s) 752, 2667, 2969
BsmI GAATGC 1 cut(s) 1960
BsoBI CYCGRG 1 cut(s) 2588
Bsp1286I GDGCHC 1 cut(s) 454
Bsp13I TCCGGA 1 cut(s) 2156
BspACI CCGC 6 cut(s) 261, 669, 1193, 2929, 2934, 2947
BspEI TCCGGA 1 cut(s) 2156
BspFNI CGCG 1 cut(s) 122
BspHI TCATGA 3 cut(s) 22, 1240, 2893
BspLI GGNNCC 4 cut(s) 371, 1466, 2529, 2751
BspMAI CTGCAG 1 cut(s) 3015
BspMI ACCTGC 1 cut(s) 1424
BspPI GGATC 9 cut(s) 347, 492, 957, 1892, 2278, 2379, 3120, 3299, 3416
BspT107I GGYRCC 2 cut(s) 1464, 2527
BspTI CTTAAG 1 cut(s) 2417
BsrDI GCAATG 1 cut(s) 2389
BsrFI RCCGGY 2 cut(s) 2476, 3321
BssAI RCCGGY 2 cut(s) 2476, 3321
BssECI CCNNGG 4 cut(s) 1047, 2108, 2753, 3052
BssT1I CCWWGG 4 cut(s) 1047, 2108, 2753, 3052
Bst2UI CCWGG 2 cut(s) 993, 2607
Bst4CI ACNGT 9 cut(s) 83, 977, 2015, 2867, 2873, 3044, 3209, 3531, 3588
Bst6I CTCTTC 6 cut(s) 40, 172, 1098, 2058, 2854, 3588
BstAFI CTTAAG 1 cut(s) 2417
BstAPI GCANNNNNTGC 3 cut(s) 1510, 2642, 3484
BstBAI YACGTR 1 cut(s) 2379
BstC8I GCNNGC 6 cut(s) 1109, 1113, 1197, 1799, 2211, 3229
BstENI CCTNNNNNAGG 1 cut(s) 1140
BstFNI CGCG 1 cut(s) 122
BstHHI GCGC 1 cut(s) 1255
BstMAI GTCTC 4 cut(s) 1749, 2108, 2213, 2891
BstMWI GCNNNNNNNGC 6 cut(s) 1501, 1510, 1789, 1798, 2642, 3484
BstNI CCWGG 2 cut(s) 993, 2607
BstNSI RCATGY 4 cut(s) 1115, 2213, 3121, 3413
BstSCI CCNGG 2 cut(s) 991, 2605
BstSFI CTRYAG 5 cut(s) 357, 434, 1870, 2696, 3011
BstUI CGCG 1 cut(s) 122
BstV1I GCAGC 2 cut(s) 451, 3235
BstV2I GAAGAC 1 cut(s) 2457
BstX2I RGATCY 4 cut(s) 228, 484, 2371, 3432
BstYI RGATCY 4 cut(s) 228, 484, 2371, 3432
Bsu36I CCTNAGG 1 cut(s) 1137
BsuI GTATCC 1 cut(s) 3167
BtsI GCAGTG 2 cut(s) 495, 2506
BtsIMutI CAGTG 7 cut(s) 105, 375, 495, 1484, 2416, 2506, 3214
BveI ACCTGC 1 cut(s) 1424
Cac8I GCNNGC 6 cut(s) 1109, 1113, 1197, 1799, 2211, 3229
CaiI CAGNNNCTG 2 cut(s) 464, 1628
CciI TCATGA 3 cut(s) 22, 1240, 2893
CfoI GCGC 1 cut(s) 1255
Cfr10I RCCGGY 2 cut(s) 2476, 3321
Cfr13I GGNCC 5 cut(s) 989, 2350, 2931, 3319, 3455
CpoI CGGWCCG 1 cut(s) 2931
Csp6I GTAC 6 cut(s) 1482, 1650, 1689, 1906, 2528, 3062
CspI CGGWCCG 1 cut(s) 2931
CviQI GTAC 6 cut(s) 1482, 1650, 1689, 1906, 2528, 3062
DraI TTTAAA 2 cut(s) 1665, 2298
EaeI YGGCCR 2 cut(s) 109, 319
Eam1104I CTCTTC 6 cut(s) 40, 172, 1098, 2058, 2854, 3588
EarI CTCTTC 6 cut(s) 40, 172, 1098, 2058, 2854, 3588
EciI GGCGGA 2 cut(s) 2936, 2944
Eco130I CCWWGG 4 cut(s) 1047, 2108, 2753, 3052
Eco147I AGGCCT 3 cut(s) 29, 395, 1697
Eco32I GATATC 1 cut(s) 835
Eco47I GGWCC 4 cut(s) 989, 2931, 3319, 3455
Eco57I CTGAAG 5 cut(s) 1079, 1650, 1692, 2330, 2702
Eco81I CCTNAGG 1 cut(s) 1137
Eco88I CYCGRG 1 cut(s) 2588
EcoNI CCTNNNNNAGG 1 cut(s) 1140
EcoO109I RGGNCCY 1 cut(s) 2350
EcoRI GAATTC 1 cut(s) 1275
EcoRII CCWGG 2 cut(s) 991, 2605
EcoRV GATATC 1 cut(s) 835
EcoT14I CCWWGG 4 cut(s) 1047, 2108, 2753, 3052
EcoT22I ATGCAT 4 cut(s) 964, 1506, 1962, 2287
ErhI CCWWGG 4 cut(s) 1047, 2108, 2753, 3052
FalI AAGNNNNNCTT 8 cut(s) 438, 470, 1134, 1166, 2233, 2265, 2442, 2474
FaqI GGGAC 3 cut(s) 752, 2667, 2969
FbaI TGATCA 1 cut(s) 3349
Fnu4HI GCNGC 4 cut(s) 261, 465, 1193, 3249
Fsp4HI GCNGC 4 cut(s) 261, 465, 1193, 3249
FspBI CTAG 7 cut(s) 827, 1814, 1850, 2570, 2925, 3563, 3603
GlaI GCGC 1 cut(s) 1254
GluI GCNGC 4 cut(s) 261, 465, 1193, 3249
GsaI CCCAGC 3 cut(s) 484, 564, 2175
GsuI CTGGAG 1 cut(s) 159
HapII CCGG 4 cut(s) 1752, 2157, 2477, 3322
HhaI GCGC 1 cut(s) 1255
Hin6I GCGC 1 cut(s) 1253
HinP1I GCGC 1 cut(s) 1253
HincII GTYRAC 1 cut(s) 2617
HindII GTYRAC 1 cut(s) 2617
HindIII AAGCTT 1 cut(s) 851
HpaII CCGG 4 cut(s) 1752, 2157, 2477, 3322
HphI GGTGA 7 cut(s) 95, 247, 1956, 3050, 3077, 3287, 3464
Hpy166II GTNNAC 9 cut(s) 145, 604, 1484, 2341, 2482, 2617, 2845, 3085, 3393
Hpy8I GTNNAC 9 cut(s) 145, 604, 1484, 2341, 2482, 2617, 2845, 3085, 3393
HpyCH4III ACNGT 9 cut(s) 83, 977, 2015, 2867, 2873, 3044, 3209, 3531, 3588
HpyCH4IV ACGT 3 cut(s) 858, 1908, 2378
HpyF10VI GCNNNNNNNGC 6 cut(s) 1501, 1510, 1789, 1798, 2642, 3484
HpySE526I ACGT 3 cut(s) 858, 1908, 2378
HspAI GCGC 1 cut(s) 1253
Kpn2I TCCGGA 1 cut(s) 2156
KpnI GGTACC 1 cut(s) 2531
Ksp22I TGATCA 1 cut(s) 3349
LmnI GCTCC 3 cut(s) 283, 2175, 3224
Lsp1109I GCAGC 2 cut(s) 451, 3235
LweI GCATC 6 cut(s) 418, 1345, 1491, 1594, 2418, 3235
MaeI CTAG 7 cut(s) 827, 1814, 1850, 2570, 2925, 3563, 3603
MaeII ACGT 3 cut(s) 858, 1908, 2378
MaeIII GTNAC 9 cut(s) 722, 1042, 1399, 1421, 1471, 2227, 2867, 3038, 3361
MfeI CAATTG 1 cut(s) 1997
MflI RGATCY 4 cut(s) 228, 484, 2371, 3432
MhlI GDGCHC 1 cut(s) 454
MlsI TGGCCA 2 cut(s) 111, 321
MluNI TGGCCA 2 cut(s) 111, 321
MlyI GAGTC 4 cut(s) 1458, 2540, 2899, 3421
MmeI TCCRAC 3 cut(s) 577, 3449, 3517
Mox20I TGGCCA 2 cut(s) 111, 321
Mph1103I ATGCAT 4 cut(s) 964, 1506, 1962, 2287
MroI TCCGGA 1 cut(s) 2156
MroXI GAANNNNTTC 2 cut(s) 1092, 2454
MscI TGGCCA 2 cut(s) 111, 321
MslI CAYNNNNRTG 4 cut(s) 914, 1947, 2214, 3273
Msp20I TGGCCA 2 cut(s) 111, 321
MspCI CTTAAG 1 cut(s) 2417
MspI CCGG 4 cut(s) 1752, 2157, 2477, 3322
MspR9I CCNGG 2 cut(s) 993, 2607
MunI CAATTG 1 cut(s) 1997
Mva1269I GAATGC 1 cut(s) 1960
MvaI CCWGG 2 cut(s) 993, 2607
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 6 cut(s) 1501, 1510, 1789, 1798, 2642, 3484
NlaIV GGNNCC 4 cut(s) 371, 1466, 2529, 2751
NmeAIII GCCGAG 1 cut(s) 2185
NmuCI GTSAC 4 cut(s) 1399, 1421, 2867, 3038
NsiI ATGCAT 4 cut(s) 964, 1506, 1962, 2287
NspI RCATGY 4 cut(s) 1115, 2213, 3121, 3413
PaeI GCATGC 2 cut(s) 1115, 2213
PagI TCATGA 3 cut(s) 22, 1240, 2893
PceI AGGCCT 3 cut(s) 29, 395, 1697
PctI GAATGC 1 cut(s) 1960
PdmI GAANNNNTTC 2 cut(s) 1092, 2454
PfoI TCCNGGA 1 cut(s) 991
PkrI GCNGC 4 cut(s) 262, 466, 1194, 3250
PleI GAGTC 4 cut(s) 1457, 2540, 2898, 3421
PpsI GAGTC 4 cut(s) 1457, 2540, 2898, 3421
Ppu21I YACGTR 1 cut(s) 2379
PsiI TTATAA 3 cut(s) 890, 1010, 1703
Psp6I CCWGG 2 cut(s) 991, 2605
PspFI CCCAGC 3 cut(s) 480, 560, 2171
PspGI CCWGG 2 cut(s) 991, 2605
PspN4I GGNNCC 4 cut(s) 371, 1466, 2529, 2751
PspPI GGNCC 5 cut(s) 989, 2350, 2931, 3319, 3455
PstI CTGCAG 1 cut(s) 3015
PstNI CAGNNNCTG 2 cut(s) 464, 1628
PsuI RGATCY 4 cut(s) 228, 484, 2371, 3432
RsaI GTAC 6 cut(s) 1483, 1651, 1690, 1907, 2529, 3063
RsaNI GTAC 6 cut(s) 1482, 1650, 1689, 1906, 2528, 3062
RseI CAYNNNNRTG 4 cut(s) 914, 1947, 2214, 3273
Rsr2I CGGWCCG 1 cut(s) 2931
RsrII CGGWCCG 1 cut(s) 2931
SatI GCNGC 4 cut(s) 261, 465, 1193, 3249
Sau96I GGNCC 5 cut(s) 989, 2350, 2931, 3319, 3455
ScaI AGTACT 2 cut(s) 1651, 3063
SchI GAGTC 4 cut(s) 1458, 2540, 2899, 3421
ScrFI CCNGG 2 cut(s) 993, 2607
SduI GDGCHC 1 cut(s) 454
SfaNI GCATC 6 cut(s) 418, 1345, 1491, 1594, 2418, 3235
SfcI CTRYAG 5 cut(s) 357, 434, 1870, 2696, 3011
SinI GGWCC 4 cut(s) 989, 2931, 3319, 3455
SmiI ATTTAAAT 1 cut(s) 2298
SmiMI CAYNNNNRTG 4 cut(s) 914, 1947, 2214, 3273
SmlI CTYRAG 7 cut(s) 70, 247, 278, 1913, 1991, 2096, 2417
SmoI CTYRAG 7 cut(s) 70, 247, 278, 1913, 1991, 2096, 2417
SphI GCATGC 2 cut(s) 1115, 2213
SseBI AGGCCT 3 cut(s) 29, 395, 1697
SsiI CCGC 6 cut(s) 261, 669, 1193, 2929, 2934, 2947
SspI AATATT 3 cut(s) 339, 675, 2334
SspMI CTAG 7 cut(s) 827, 1814, 1850, 2570, 2925, 3563, 3603
StuI AGGCCT 3 cut(s) 29, 395, 1697
StyD4I CCNGG 2 cut(s) 991, 2605
StyI CCWWGG 4 cut(s) 1047, 2108, 2753, 3052
SwaI ATTTAAAT 1 cut(s) 2298
TaaI ACNGT 9 cut(s) 83, 977, 2015, 2867, 2873, 3044, 3209, 3531, 3588
TaiI ACGT 3 cut(s) 861, 1911, 2381
TaqI TCGA 7 cut(s) 216, 307, 1069, 1339, 1729, 2260, 2882
TatI WGTACW 4 cut(s) 1481, 1649, 1688, 3061
TauI GCSGC 2 cut(s) 263, 1195
TscAI CASTG 7 cut(s) 112, 382, 502, 1491, 2416, 2513, 3214
TseFI GTSAC 4 cut(s) 1399, 1421, 2867, 3038
TseI GCWGC 2 cut(s) 464, 3248
Tsp45I GTSAC 4 cut(s) 1399, 1421, 2867, 3038
TspGWI ACGGA 2 cut(s) 1109, 2381
TspRI CASTG 7 cut(s) 112, 382, 502, 1491, 2416, 2513, 3214
Vha464I CTTAAG 1 cut(s) 2417
VpaK11BI GGWCC 4 cut(s) 989, 2931, 3319, 3455
XagI CCTNNNNNAGG 1 cut(s) 1140
XapI RAATTY 5 cut(s) 469, 728, 1275, 1832, 2129
XceI RCATGY 4 cut(s) 1115, 2213, 3121, 3413
XcmI CCANNNNNNNNNTGG 1 cut(s) 593
XmnI GAANNNNTTC 2 cut(s) 1092, 2454
XspI CTAG 7 cut(s) 827, 1814, 1850, 2570, 2925, 3563, 3603
ZrmI AGTACT 2 cut(s) 1651, 3063
Zsp2I ATGCAT 4 cut(s) 964, 1506, 1962, 2287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.