transcription regulatory region sequence-specific DNA binding
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 368 |
| AciI | CCGC | 2 cut(s) | 180, 536 |
| AclWI | GGATC | 2 cut(s) | 151, 630 |
| AcsI | RAATTY | 1 cut(s) | 740 |
| AcuI | CTGAAG | 2 cut(s) | 471, 620 |
| AfaI | GTAC | 1 cut(s) | 556 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 278, 469, 696 |
| AflIII | ACRYGT | 1 cut(s) | 437 |
| AgsI | TTSAA | 1 cut(s) | 293 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 198, 230 |
| AluBI | AGCT | 3 cut(s) | 140, 493, 656 |
| AluI | AGCT | 3 cut(s) | 140, 493, 656 |
| Alw21I | GWGCWC | 1 cut(s) | 128 |
| Alw44I | GTGCAC | 1 cut(s) | 124 |
| AlwI | GGATC | 2 cut(s) | 151, 630 |
| Ama87I | CYCGRG | 1 cut(s) | 271 |
| ApaLI | GTGCAC | 1 cut(s) | 124 |
| ApoI | RAATTY | 1 cut(s) | 740 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 512, 544 |
| AspS9I | GGNCC | 1 cut(s) | 671 |
| AvaI | CYCGRG | 1 cut(s) | 271 |
| AvaII | GGWCC | 1 cut(s) | 671 |
| BaeGI | GKGCMC | 1 cut(s) | 128 |
| Bbv12I | GWGCWC | 1 cut(s) | 128 |
| BccI | CCATC | 3 cut(s) | 162, 272, 682 |
| BfaI | CTAG | 1 cut(s) | 581 |
| BfmI | CTRYAG | 2 cut(s) | 161, 711 |
| Bme18I | GGWCC | 1 cut(s) | 671 |
| BmeT110I | CYCGRG | 1 cut(s) | 271 |
| BmgT120I | GGNCC | 1 cut(s) | 671 |
| BmrI | ACTGGG | 1 cut(s) | 684 |
| BmuI | ACTGGG | 1 cut(s) | 684 |
| Bpu10I | CCTNAGC | 1 cut(s) | 322 |
| BsaBI | GATNNNNATC | 3 cut(s) | 342, 621, 684 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 501, 531 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 278, 469, 696 |
| Bse1I | ACTGG | 1 cut(s) | 690 |
| Bse3DI | GCAATG | 1 cut(s) | 125 |
| Bse8I | GATNNNNATC | 3 cut(s) | 342, 621, 684 |
| BseGI | GGATG | 4 cut(s) | 173, 649, 685, 705 |
| BseJI | GATNNNNATC | 3 cut(s) | 342, 621, 684 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 278, 469, 696 |
| BseMI | GCAATG | 1 cut(s) | 125 |
| BseMII | CTCAG | 3 cut(s) | 336, 378, 671 |
| BseNI | ACTGG | 1 cut(s) | 690 |
| BseSI | GKGCMC | 1 cut(s) | 128 |
| BsiHKAI | GWGCWC | 1 cut(s) | 128 |
| BsiHKCI | CYCGRG | 1 cut(s) | 271 |
| BslFI | GGGAC | 2 cut(s) | 486, 602 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 278, 469, 696 |
| BsmFI | GGGAC | 2 cut(s) | 486, 602 |
| BsoBI | CYCGRG | 1 cut(s) | 271 |
| Bsp1286I | GDGCHC | 1 cut(s) | 128 |
| Bsp143I | GATC | 2 cut(s) | 156, 622 |
| BspACI | CCGC | 2 cut(s) | 180, 536 |
| BspCNI | CTCAG | 3 cut(s) | 335, 379, 670 |
| BspPI | GGATC | 2 cut(s) | 151, 630 |
| BsrDI | GCAATG | 1 cut(s) | 125 |
| BsrI | ACTGG | 1 cut(s) | 690 |
| BssMI | GATC | 2 cut(s) | 156, 622 |
| Bst4CI | ACNGT | 1 cut(s) | 364 |
| BstC8I | GCNNGC | 2 cut(s) | 396, 400 |
| BstDEI | CTNAG | 3 cut(s) | 322, 387, 657 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 467 |
| BstF5I | GGATG | 4 cut(s) | 173, 649, 685, 705 |
| BstKTI | GATC | 2 cut(s) | 159, 625 |
| BstMBI | GATC | 2 cut(s) | 156, 622 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 318, 499 |
| BstNSI | RCATGY | 1 cut(s) | 441 |
| BstSFI | CTRYAG | 2 cut(s) | 161, 711 |
| BstSLI | GKGCMC | 1 cut(s) | 128 |
| BstX2I | RGATCY | 1 cut(s) | 156 |
| BstYI | RGATCY | 1 cut(s) | 156 |
| BtsCI | GGATG | 4 cut(s) | 173, 649, 685, 705 |
| Cac8I | GCNNGC | 2 cut(s) | 396, 400 |
| Cfr13I | GGNCC | 1 cut(s) | 671 |
| Csp6I | GTAC | 1 cut(s) | 555 |
| CviAII | CATG | 5 cut(s) | 100, 203, 379, 438, 614 |
| CviJI | RGCY | 7 cut(s) | 140, 173, 298, 398, 455, 493, 656 |
| CviKI_1 | RGCY | 7 cut(s) | 140, 173, 298, 398, 455, 493, 656 |
| CviQI | GTAC | 1 cut(s) | 555 |
| DdeI | CTNAG | 3 cut(s) | 322, 387, 657 |
| DpnI | GATC | 2 cut(s) | 158, 624 |
| DpnII | GATC | 2 cut(s) | 156, 622 |
| EciI | GGCGGA | 1 cut(s) | 551 |
| Eco47I | GGWCC | 1 cut(s) | 671 |
| Eco57I | CTGAAG | 2 cut(s) | 471, 620 |
| Eco88I | CYCGRG | 1 cut(s) | 271 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 467 |
| EcoT22I | ATGCAT | 2 cut(s) | 384, 615 |
| FaeI | CATG | 5 cut(s) | 103, 206, 382, 441, 617 |
| FaqI | GGGAC | 2 cut(s) | 486, 602 |
| FatI | CATG | 5 cut(s) | 99, 202, 378, 437, 613 |
| FokI | GGATG | 4 cut(s) | 180, 636, 672, 712 |
| FspBI | CTAG | 1 cut(s) | 581 |
| Hin1II | CATG | 5 cut(s) | 103, 206, 382, 441, 617 |
| HincII | GTYRAC | 2 cut(s) | 238, 520 |
| HindII | GTYRAC | 2 cut(s) | 238, 520 |
| HinfI | GANTC | 4 cut(s) | 50, 301, 425, 539 |
| Hpy166II | GTNNAC | 3 cut(s) | 126, 238, 520 |
| Hpy188I | TCNGA | 6 cut(s) | 16, 432, 544, 600, 679, 699 |
| Hpy188III | TCNNGA | 1 cut(s) | 218 |
| Hpy8I | GTNNAC | 3 cut(s) | 126, 238, 520 |
| HpyAV | CCTTC | 4 cut(s) | 209, 287, 595, 662 |
| HpyCH4III | ACNGT | 1 cut(s) | 364 |
| HpyCH4V | TGCA | 6 cut(s) | 118, 126, 382, 402, 502, 613 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 318, 499 |
| HpyF3I | CTNAG | 3 cut(s) | 322, 387, 657 |
| Hsp92II | CATG | 5 cut(s) | 103, 206, 382, 441, 617 |
| Kzo9I | GATC | 2 cut(s) | 156, 622 |
| MaeI | CTAG | 1 cut(s) | 581 |
| MalI | GATC | 2 cut(s) | 158, 624 |
| MboI | GATC | 2 cut(s) | 156, 622 |
| MboII | GAAGA | 2 cut(s) | 166, 338 |
| MflI | RGATCY | 1 cut(s) | 156 |
| MhlI | GDGCHC | 1 cut(s) | 128 |
| MluCI | AATT | 4 cut(s) | 476, 496, 705, 740 |
| MlyI | GAGTC | 1 cut(s) | 295 |
| MnlI | CCTC | 5 cut(s) | 61, 235, 360, 415, 606 |
| Mph1103I | ATGCAT | 2 cut(s) | 384, 615 |
| MseI | TTAA | 3 cut(s) | 92, 489, 576 |
| MslI | CAYNNNNRTG | 1 cut(s) | 104 |
| MspA1I | CMGCKG | 1 cut(s) | 140 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 318, 499 |
| NdeII | GATC | 2 cut(s) | 156, 622 |
| NlaIII | CATG | 5 cut(s) | 103, 206, 382, 441, 617 |
| NsiI | ATGCAT | 2 cut(s) | 384, 615 |
| NspI | RCATGY | 1 cut(s) | 441 |
| PciI | ACATGT | 1 cut(s) | 437 |
| PfeI | GAWTC | 3 cut(s) | 50, 425, 539 |
| PleI | GAGTC | 1 cut(s) | 295 |
| PpsI | GAGTC | 1 cut(s) | 295 |
| PscI | ACATGT | 1 cut(s) | 437 |
| PsiI | TTATAA | 1 cut(s) | 368 |
| PspPI | GGNCC | 1 cut(s) | 671 |
| PsuI | RGATCY | 1 cut(s) | 156 |
| PvuII | CAGCTG | 1 cut(s) | 140 |
| RsaI | GTAC | 1 cut(s) | 556 |
| RsaNI | GTAC | 1 cut(s) | 555 |
| RseI | CAYNNNNRTG | 1 cut(s) | 104 |
| SaqAI | TTAA | 3 cut(s) | 92, 489, 576 |
| Sau3AI | GATC | 2 cut(s) | 156, 622 |
| Sau96I | GGNCC | 1 cut(s) | 671 |
| SchI | GAGTC | 1 cut(s) | 295 |
| SduI | GDGCHC | 1 cut(s) | 128 |
| SfcI | CTRYAG | 2 cut(s) | 161, 711 |
| SinI | GGWCC | 1 cut(s) | 671 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 104 |
| Sse9I | AATT | 4 cut(s) | 476, 496, 705, 740 |
| SsiI | CCGC | 2 cut(s) | 180, 536 |
| SspMI | CTAG | 1 cut(s) | 581 |
| TaaI | ACNGT | 1 cut(s) | 364 |
| TaqI | TCGA | 1 cut(s) | 261 |
| TasI | AATT | 4 cut(s) | 476, 496, 705, 740 |
| TfiI | GAWTC | 3 cut(s) | 50, 425, 539 |
| Tru1I | TTAA | 3 cut(s) | 92, 489, 576 |
| Tru9I | TTAA | 3 cut(s) | 92, 489, 576 |
| TspDTI | ATGAA | 2 cut(s) | 191, 681 |
| VneI | GTGCAC | 1 cut(s) | 124 |
| VpaK11BI | GGWCC | 1 cut(s) | 671 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 467 |
| XapI | RAATTY | 1 cut(s) | 740 |
| XceI | RCATGY | 1 cut(s) | 441 |
| XspI | CTAG | 1 cut(s) | 581 |
| Zsp2I | ATGCAT | 2 cut(s) | 384, 615 |