TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 8 - 56 | 2.2e-12 | Disease resistance protein Roq1-like, winged-helix domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 283 |
| AfaI | GTAC | 1 cut(s) | 27 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 56 |
| AgsI | TTSAA | 3 cut(s) | 74, 134, 257 |
| AjnI | CCWGG | 1 cut(s) | 178 |
| AluBI | AGCT | 3 cut(s) | 297, 361, 480 |
| AluI | AGCT | 3 cut(s) | 297, 361, 480 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 331 |
| AspS9I | GGNCC | 1 cut(s) | 10 |
| AvaII | GGWCC | 1 cut(s) | 10 |
| BbsI | GAAGAC | 1 cut(s) | 255 |
| BccI | CCATC | 1 cut(s) | 393 |
| BceAI | ACGGC | 1 cut(s) | 49 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 133, 167 |
| BciT130I | CCWGG | 1 cut(s) | 180 |
| BclI | TGATCA | 1 cut(s) | 448 |
| BfaI | CTAG | 1 cut(s) | 461 |
| BfmI | CTRYAG | 1 cut(s) | 481 |
| BmcAI | AGTACT | 1 cut(s) | 27 |
| Bme1390I | CCNGG | 1 cut(s) | 180 |
| Bme18I | GGWCC | 1 cut(s) | 10 |
| BmgT120I | GGNCC | 1 cut(s) | 10 |
| BmrFI | CCNGG | 1 cut(s) | 180 |
| BmsI | GCATC | 1 cut(s) | 108 |
| BoxI | GACNNNNGTC | 1 cut(s) | 36 |
| BpiI | GAAGAC | 1 cut(s) | 255 |
| BpmI | CTGGAG | 1 cut(s) | 446 |
| Bpu10I | CCTNAGC | 1 cut(s) | 476 |
| BsaBI | GATNNNNATC | 1 cut(s) | 447 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 56 |
| Bse1I | ACTGG | 1 cut(s) | 370 |
| Bse8I | GATNNNNATC | 1 cut(s) | 447 |
| BseBI | CCWGG | 1 cut(s) | 180 |
| BseJI | GATNNNNATC | 1 cut(s) | 447 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 56 |
| BseMII | CTCAG | 2 cut(s) | 323, 467 |
| BseNI | ACTGG | 1 cut(s) | 370 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 56 |
| Bsp143I | GATC | 2 cut(s) | 76, 448 |
| BspCNI | CTCAG | 2 cut(s) | 324, 468 |
| BspHI | TCATGA | 1 cut(s) | 114 |
| BsrI | ACTGG | 1 cut(s) | 370 |
| BssMI | GATC | 2 cut(s) | 76, 448 |
| Bst2UI | CCWGG | 1 cut(s) | 180 |
| Bst4CI | ACNGT | 2 cut(s) | 25, 94 |
| BstC8I | GCNNGC | 1 cut(s) | 159 |
| BstDEI | CTNAG | 2 cut(s) | 332, 476 |
| BstKTI | GATC | 2 cut(s) | 79, 451 |
| BstMBI | GATC | 2 cut(s) | 76, 448 |
| BstNI | CCWGG | 1 cut(s) | 180 |
| BstNSI | RCATGY | 2 cut(s) | 161, 325 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 36 |
| BstSCI | CCNGG | 1 cut(s) | 178 |
| BstSFI | CTRYAG | 1 cut(s) | 481 |
| BstV2I | GAAGAC | 1 cut(s) | 255 |
| BtsIMutI | CAGTG | 1 cut(s) | 363 |
| Cac8I | GCNNGC | 1 cut(s) | 159 |
| CaiI | CAGNNNCTG | 1 cut(s) | 331 |
| CciI | TCATGA | 1 cut(s) | 114 |
| Cfr13I | GGNCC | 1 cut(s) | 10 |
| Csp6I | GTAC | 1 cut(s) | 26 |
| CviAII | CATG | 7 cut(s) | 14, 115, 122, 139, 158, 322, 413 |
| CviJI | RGCY | 4 cut(s) | 36, 297, 361, 480 |
| CviKI_1 | RGCY | 4 cut(s) | 36, 297, 361, 480 |
| CviQI | GTAC | 1 cut(s) | 26 |
| DdeI | CTNAG | 2 cut(s) | 332, 476 |
| DpnI | GATC | 2 cut(s) | 78, 450 |
| DpnII | GATC | 2 cut(s) | 76, 448 |
| Eco47I | GGWCC | 1 cut(s) | 10 |
| Eco57I | CTGAAG | 1 cut(s) | 283 |
| EcoRII | CCWGG | 1 cut(s) | 178 |
| EcoT22I | ATGCAT | 1 cut(s) | 123 |
| FaeI | CATG | 7 cut(s) | 17, 118, 125, 142, 161, 325, 416 |
| FatI | CATG | 7 cut(s) | 13, 114, 121, 138, 157, 321, 412 |
| FbaI | TGATCA | 1 cut(s) | 448 |
| FspBI | CTAG | 1 cut(s) | 461 |
| GsuI | CTGGAG | 1 cut(s) | 446 |
| Hin1II | CATG | 7 cut(s) | 17, 118, 125, 142, 161, 325, 416 |
| HinfI | GANTC | 7 cut(s) | 61, 130, 164, 261, 281, 328, 509 |
| Hpy188I | TCNGA | 4 cut(s) | 286, 307, 333, 514 |
| Hpy188III | TCNNGA | 6 cut(s) | 50, 65, 74, 115, 240, 425 |
| Hpy99I | CGWCG | 2 cut(s) | 35, 224 |
| HpyAV | CCTTC | 2 cut(s) | 98, 251 |
| HpyCH4III | ACNGT | 2 cut(s) | 25, 94 |
| HpyCH4IV | ACGT | 2 cut(s) | 187, 222 |
| HpyCH4V | TGCA | 5 cut(s) | 121, 157, 161, 277, 325 |
| HpyF3I | CTNAG | 2 cut(s) | 332, 476 |
| HpySE526I | ACGT | 2 cut(s) | 187, 222 |
| Hsp92II | CATG | 7 cut(s) | 17, 118, 125, 142, 161, 325, 416 |
| Ksp22I | TGATCA | 1 cut(s) | 448 |
| Kzo9I | GATC | 2 cut(s) | 76, 448 |
| LpnPI | CCDG | 7 cut(s) | 63, 165, 192, 225, 351, 410, 488 |
| LweI | GCATC | 1 cut(s) | 108 |
| MaeI | CTAG | 1 cut(s) | 461 |
| MaeII | ACGT | 2 cut(s) | 187, 222 |
| MaeIII | GTNAC | 2 cut(s) | 88, 371 |
| MalI | GATC | 2 cut(s) | 78, 450 |
| MboI | GATC | 2 cut(s) | 76, 448 |
| MboII | GAAGA | 2 cut(s) | 221, 260 |
| MluCI | AATT | 1 cut(s) | 308 |
| MlyI | GAGTC | 3 cut(s) | 255, 290, 337 |
| MnlI | CCTC | 3 cut(s) | 421, 432, 499 |
| Mph1103I | ATGCAT | 1 cut(s) | 123 |
| MseI | TTAA | 1 cut(s) | 395 |
| MspR9I | CCNGG | 1 cut(s) | 180 |
| MvaI | CCWGG | 1 cut(s) | 180 |
| NdeII | GATC | 2 cut(s) | 76, 448 |
| NlaIII | CATG | 7 cut(s) | 17, 118, 125, 142, 161, 325, 416 |
| NsiI | ATGCAT | 1 cut(s) | 123 |
| NspI | RCATGY | 2 cut(s) | 161, 325 |
| PaeI | GCATGC | 1 cut(s) | 161 |
| PagI | TCATGA | 1 cut(s) | 114 |
| PfeI | GAWTC | 4 cut(s) | 61, 130, 164, 509 |
| PfoI | TCCNGGA | 1 cut(s) | 178 |
| PleI | GAGTC | 3 cut(s) | 255, 289, 336 |
| PpsI | GAGTC | 3 cut(s) | 255, 289, 336 |
| PshAI | GACNNNNGTC | 1 cut(s) | 36 |
| Psp6I | CCWGG | 1 cut(s) | 178 |
| PspGI | CCWGG | 1 cut(s) | 178 |
| PspPI | GGNCC | 1 cut(s) | 10 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 286, 318 |
| PstNI | CAGNNNCTG | 1 cut(s) | 331 |
| RsaI | GTAC | 1 cut(s) | 27 |
| RsaNI | GTAC | 1 cut(s) | 26 |
| SaqAI | TTAA | 1 cut(s) | 395 |
| Sau3AI | GATC | 2 cut(s) | 76, 448 |
| Sau96I | GGNCC | 1 cut(s) | 10 |
| ScaI | AGTACT | 1 cut(s) | 27 |
| SchI | GAGTC | 3 cut(s) | 255, 290, 337 |
| ScrFI | CCNGG | 1 cut(s) | 180 |
| SetI | ASST | 8 cut(s) | 190, 225, 299, 363, 432, 462, 477, 482 |
| SfaNI | GCATC | 1 cut(s) | 108 |
| SfcI | CTRYAG | 1 cut(s) | 481 |
| SinI | GGWCC | 1 cut(s) | 10 |
| SphI | GCATGC | 1 cut(s) | 161 |
| Sse9I | AATT | 1 cut(s) | 308 |
| SspMI | CTAG | 1 cut(s) | 461 |
| StyD4I | CCNGG | 1 cut(s) | 178 |
| TaaI | ACNGT | 2 cut(s) | 25, 94 |
| TaiI | ACGT | 2 cut(s) | 190, 225 |
| TaqI | TCGA | 2 cut(s) | 30, 64 |
| TasI | AATT | 1 cut(s) | 308 |
| TatI | WGTACW | 1 cut(s) | 25 |
| TfiI | GAWTC | 4 cut(s) | 61, 130, 164, 509 |
| Tru1I | TTAA | 1 cut(s) | 395 |
| Tru9I | TTAA | 1 cut(s) | 395 |
| TscAI | CASTG | 1 cut(s) | 370 |
| TspDTI | ATGAA | 2 cut(s) | 17, 222 |
| TspGWI | ACGGA | 1 cut(s) | 260 |
| TspRI | CASTG | 1 cut(s) | 370 |
| VpaK11BI | GGWCC | 1 cut(s) | 10 |
| XceI | RCATGY | 2 cut(s) | 161, 325 |
| XspI | CTAG | 1 cut(s) | 461 |
| ZrmI | AGTACT | 1 cut(s) | 27 |
| Zsp2I | ATGCAT | 1 cut(s) | 123 |