TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 58 - 230 | 2.8e-57 | TIR domain |
| TIR_2 | PF13676 | 61 - 157 | 9.7e-19 | TIR domain |
| NB-ARC | PF00931 | 241 - 407 | 4.3e-22 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 480 - 548 | 6.1e-19 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 681 - 827 | 2.3e-10 | Leucine-rich repeat region |
| LRR_4 | PF12799 | 740 - 781 | 1.1e-06 | Leucine Rich repeats (2 copies) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 641, 1592 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 257 |
| Acc16I | TGCGCA | 1 cut(s) | 1358 |
| AccB1I | GGYRCC | 2 cut(s) | 387, 1557 |
| AccBSI | CCGCTC | 1 cut(s) | 2620 |
| AccII | CGCG | 1 cut(s) | 374 |
| AccIII | TCCGGA | 1 cut(s) | 2332 |
| AciI | CCGC | 7 cut(s) | 211, 374, 503, 1801, 1898, 1993, 2620 |
| AclI | AACGTT | 1 cut(s) | 1663 |
| AclWI | GGATC | 7 cut(s) | 125, 461, 769, 975, 1517, 1686, 2208 |
| AcsI | RAATTY | 5 cut(s) | 589, 786, 1241, 2355, 2460 |
| AcuI | CTGAAG | 4 cut(s) | 1175, 1759, 2159, 2306 |
| AdeI | CACNNNGTG | 1 cut(s) | 181 |
| AfaI | GTAC | 6 cut(s) | 371, 686, 1014, 1632, 1780, 2133 |
| AfeI | AGCGCT | 1 cut(s) | 530 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1532, 1992 |
| AflII | CTTAAG | 1 cut(s) | 2501 |
| AflIII | ACRYGT | 3 cut(s) | 180, 681, 1154 |
| AjiI | CACGTC | 3 cut(s) | 181, 1435, 1990 |
| AjnI | CCWGG | 5 cut(s) | 338, 2464, 2469, 2642, 2658 |
| Alw21I | GWGCWC | 2 cut(s) | 1354, 2483 |
| Alw26I | GTCTC | 4 cut(s) | 28, 1798, 2088, 2410 |
| Alw44I | GTGCAC | 2 cut(s) | 1350, 2479 |
| AlwI | GGATC | 7 cut(s) | 125, 461, 769, 975, 1517, 1686, 2208 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 584, 2097 |
| Ama87I | CYCGRG | 2 cut(s) | 723, 2204 |
| Aor13HI | TCCGGA | 1 cut(s) | 2332 |
| Aor51HI | AGCGCT | 1 cut(s) | 530 |
| AoxI | GGCC | 4 cut(s) | 1886, 2275, 2467, 2630 |
| ApaLI | GTGCAC | 2 cut(s) | 1350, 2479 |
| ApeKI | GCWGC | 3 cut(s) | 584, 698, 1002 |
| ApoI | RAATTY | 5 cut(s) | 589, 786, 1241, 2355, 2460 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 44, 76, 249, 281 |
| AseI | ATTAAT | 1 cut(s) | 2570 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 510, 718, 1188, 1242, 1920 |
| AspLEI | GCGC | 3 cut(s) | 531, 1297, 1359 |
| AspS9I | GGNCC | 4 cut(s) | 216, 336, 2521, 2646 |
| AsuHPI | GGTGA | 4 cut(s) | 141, 214, 2040, 2111 |
| AsuII | TTCGAA | 1 cut(s) | 1216 |
| AsuNHI | GCTAGC | 1 cut(s) | 1870 |
| AvaI | CYCGRG | 2 cut(s) | 723, 2204 |
| AvaII | GGWCC | 4 cut(s) | 216, 336, 2521, 2646 |
| AxyI | CCTNAGG | 1 cut(s) | 2196 |
| BaeGI | GKGCMC | 2 cut(s) | 1354, 2483 |
| BanI | GGYRCC | 2 cut(s) | 387, 1557 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2499, 2531 |
| BauI | CACGAG | 1 cut(s) | 1073 |
| BbsI | GAAGAC | 3 cut(s) | 210, 259, 818 |
| Bbv12I | GWGCWC | 2 cut(s) | 1354, 2483 |
| BbvI | GCAGC | 3 cut(s) | 571, 685, 1014 |
| BccI | CCATC | 7 cut(s) | 125, 356, 378, 614, 1409, 1502, 2602 |
| BciT130I | CCWGG | 5 cut(s) | 340, 2466, 2471, 2644, 2660 |
| BcoDI | GTCTC | 4 cut(s) | 28, 1798, 2088, 2410 |
| BfaI | CTAG | 6 cut(s) | 666, 1052, 1770, 1871, 1901, 1937 |
| BfoI | RGCGCY | 2 cut(s) | 532, 1298 |
| BfrI | CTTAAG | 1 cut(s) | 2501 |
| BglII | AGATCT | 2 cut(s) | 566, 2233 |
| BisI | GCNGC | 4 cut(s) | 585, 699, 1003, 1994 |
| BlsI | GCNGC | 4 cut(s) | 586, 700, 1004, 1995 |
| Bme1390I | CCNGG | 5 cut(s) | 340, 2466, 2471, 2644, 2660 |
| Bme18I | GGWCC | 4 cut(s) | 216, 336, 2521, 2646 |
| BmeT110I | CYCGRG | 2 cut(s) | 723, 2204 |
| BmgBI | CACGTC | 3 cut(s) | 181, 1435, 1990 |
| BmgT120I | GGNCC | 4 cut(s) | 216, 336, 2521, 2646 |
| BmiI | GGNNCC | 6 cut(s) | 389, 485, 605, 976, 1559, 2522 |
| BmrFI | CCNGG | 5 cut(s) | 340, 2466, 2471, 2644, 2660 |
| BmsI | GCATC | 6 cut(s) | 100, 152, 1788, 2176, 2440, 2485 |
| BmtI | GCTAGC | 1 cut(s) | 1874 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1953 |
| BpiI | GAAGAC | 3 cut(s) | 210, 259, 818 |
| Bpu14I | TTCGAA | 1 cut(s) | 1216 |
| BpuEI | CTTGAG | 4 cut(s) | 208, 413, 422, 2018 |
| BsaAI | YACGTR | 2 cut(s) | 684, 1634 |
| BsaBI | GATNNNNATC | 2 cut(s) | 347, 1923 |
| BsaI | GGTCTC | 1 cut(s) | 28 |
| BsaJI | CCNNGG | 4 cut(s) | 105, 535, 978, 2659 |
| BsaWI | WCCGGW | 1 cut(s) | 2332 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1532, 1992 |
| Bse1I | ACTGG | 7 cut(s) | 242, 321, 496, 1296, 1660, 1846, 2278 |
| Bse21I | CCTNAGG | 1 cut(s) | 2196 |
| Bse3DI | GCAATG | 2 cut(s) | 2251, 2376 |
| Bse8I | GATNNNNATC | 2 cut(s) | 347, 1923 |
| BseAI | TCCGGA | 1 cut(s) | 2332 |
| BseBI | CCWGG | 5 cut(s) | 340, 2466, 2471, 2644, 2660 |
| BseDI | CCNNGG | 4 cut(s) | 105, 535, 978, 2659 |
| BseGI | GGATG | 4 cut(s) | 115, 348, 481, 2613 |
| BseJI | GATNNNNATC | 2 cut(s) | 347, 1923 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1532, 1992 |
| BseMI | GCAATG | 2 cut(s) | 2251, 2376 |
| BseMII | CTCAG | 7 cut(s) | 1799, 1804, 1881, 1943, 2104, 2187, 2411 |
| BseNI | ACTGG | 7 cut(s) | 242, 321, 496, 1296, 1660, 1846, 2278 |
| BseRI | GAGGAG | 5 cut(s) | 127, 145, 148, 309, 410 |
| BseSI | GKGCMC | 2 cut(s) | 1354, 2483 |
| BseXI | GCAGC | 3 cut(s) | 571, 685, 1014 |
| BsgI | GTGCAG | 2 cut(s) | 439, 2241 |
| Bsh1236I | CGCG | 1 cut(s) | 374 |
| BshFI | GGCC | 4 cut(s) | 1888, 2277, 2469, 2632 |
| BshNI | GGYRCC | 2 cut(s) | 387, 1557 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1354, 2483 |
| BsiHKCI | CYCGRG | 2 cut(s) | 723, 2204 |
| BsiSI | CCGG | 2 cut(s) | 214, 2333 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1532, 1992 |
| BsmAI | GTCTC | 4 cut(s) | 28, 1798, 2088, 2410 |
| BsmI | GAATGC | 1 cut(s) | 2397 |
| BsnI | GGCC | 4 cut(s) | 1888, 2277, 2469, 2632 |
| Bso31I | GGTCTC | 1 cut(s) | 28 |
| BsoBI | CYCGRG | 2 cut(s) | 723, 2204 |
| Bsp119I | TTCGAA | 1 cut(s) | 1216 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1354, 2483 |
| Bsp13I | TCCGGA | 1 cut(s) | 2332 |
| Bsp19I | CCATGG | 2 cut(s) | 105, 535 |
| BspACI | CCGC | 7 cut(s) | 211, 374, 503, 1801, 1898, 1993, 2620 |
| BspANI | GGCC | 4 cut(s) | 1888, 2277, 2469, 2632 |
| BspCNI | CTCAG | 7 cut(s) | 1800, 1803, 1882, 1944, 2103, 2188, 2412 |
| BspEI | TCCGGA | 1 cut(s) | 2332 |
| BspFNI | CGCG | 1 cut(s) | 374 |
| BspHI | TCATGA | 1 cut(s) | 1681 |
| BspLI | GGNNCC | 6 cut(s) | 389, 485, 605, 976, 1559, 2522 |
| BspOI | GCTAGC | 1 cut(s) | 1874 |
| BspPI | GGATC | 7 cut(s) | 125, 461, 769, 975, 1517, 1686, 2208 |
| BspQI | GCTCTTC | 1 cut(s) | 1194 |
| BspT104I | TTCGAA | 1 cut(s) | 1216 |
| BspT107I | GGYRCC | 2 cut(s) | 387, 1557 |
| BspTI | CTTAAG | 1 cut(s) | 2501 |
| BspTNI | GGTCTC | 1 cut(s) | 28 |
| BsrBI | CCGCTC | 1 cut(s) | 2620 |
| BsrDI | GCAATG | 2 cut(s) | 2251, 2376 |
| BsrI | ACTGG | 7 cut(s) | 242, 321, 496, 1296, 1660, 1846, 2278 |
| BssECI | CCNNGG | 4 cut(s) | 105, 535, 978, 2659 |
| BssSI | CACGAG | 1 cut(s) | 1073 |
| BssT1I | CCWWGG | 3 cut(s) | 105, 535, 978 |
| Bst2BI | CACGAG | 1 cut(s) | 1073 |
| Bst2UI | CCWGG | 5 cut(s) | 340, 2466, 2471, 2644, 2660 |
| Bst4CI | ACNGT | 6 cut(s) | 336, 369, 820, 1277, 1570, 2301 |
| Bst6I | CTCTTC | 3 cut(s) | 885, 1050, 1194 |
| BstAFI | CTTAAG | 1 cut(s) | 2501 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1603 |
| BstBAI | YACGTR | 2 cut(s) | 684, 1634 |
| BstBI | TTCGAA | 1 cut(s) | 1216 |
| BstC8I | GCNNGC | 3 cut(s) | 522, 1209, 1872 |
| BstDSI | CCRYGG | 2 cut(s) | 105, 535 |
| BstF5I | GGATG | 4 cut(s) | 115, 348, 481, 2613 |
| BstFNI | CGCG | 1 cut(s) | 374 |
| BstH2I | RGCGCY | 2 cut(s) | 532, 1298 |
| BstHHI | GCGC | 3 cut(s) | 531, 1297, 1359 |
| BstMAI | GTCTC | 4 cut(s) | 28, 1798, 2088, 2410 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 198, 526, 1294, 1603 |
| BstNI | CCWGG | 5 cut(s) | 340, 2466, 2471, 2644, 2660 |
| BstNSI | RCATGY | 3 cut(s) | 524, 1158, 2564 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1953 |
| BstSCI | CCNGG | 5 cut(s) | 338, 2464, 2469, 2642, 2658 |
| BstSLI | GKGCMC | 2 cut(s) | 1354, 2483 |
| BstUI | CGCG | 1 cut(s) | 374 |
| BstV1I | GCAGC | 3 cut(s) | 571, 685, 1014 |
| BstV2I | GAAGAC | 3 cut(s) | 210, 259, 818 |
| BstX2I | RGATCY | 3 cut(s) | 566, 2200, 2233 |
| BstYI | RGATCY | 3 cut(s) | 566, 2200, 2233 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2196 |
| BsuRI | GGCC | 4 cut(s) | 1888, 2277, 2469, 2632 |
| BtgI | CCRYGG | 2 cut(s) | 105, 535 |
| BtrI | CACGTC | 3 cut(s) | 181, 1435, 1990 |
| BtsCI | GGATG | 4 cut(s) | 115, 348, 481, 2613 |
| BtsI | GCAGTG | 2 cut(s) | 967, 1352 |
| BtsIMutI | CAGTG | 9 cut(s) | 615, 967, 1289, 1352, 1653, 1839, 2271, 2378, 2454 |
| Cac8I | GCNNGC | 3 cut(s) | 522, 1209, 1872 |
| CaiI | CAGNNNCTG | 2 cut(s) | 584, 2097 |
| CciI | TCATGA | 1 cut(s) | 1681 |
| CfoI | GCGC | 3 cut(s) | 531, 1297, 1359 |
| Cfr13I | GGNCC | 4 cut(s) | 216, 336, 2521, 2646 |
| Csp6I | GTAC | 6 cut(s) | 370, 685, 1013, 1631, 1779, 2132 |
| CviQI | GTAC | 6 cut(s) | 370, 685, 1013, 1631, 1779, 2132 |
| DraIII | CACNNNGTG | 1 cut(s) | 181 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 257 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 257 |
| Eam1104I | CTCTTC | 3 cut(s) | 885, 1050, 1194 |
| EarI | CTCTTC | 3 cut(s) | 885, 1050, 1194 |
| Eco130I | CCWWGG | 3 cut(s) | 105, 535, 978 |
| Eco147I | AGGCCT | 1 cut(s) | 2469 |
| Eco31I | GGTCTC | 1 cut(s) | 28 |
| Eco32I | GATATC | 2 cut(s) | 931, 1945 |
| Eco47I | GGWCC | 4 cut(s) | 216, 336, 2521, 2646 |
| Eco47III | AGCGCT | 1 cut(s) | 530 |
| Eco57I | CTGAAG | 4 cut(s) | 1175, 1759, 2159, 2306 |
| Eco81I | CCTNAGG | 1 cut(s) | 2196 |
| Eco88I | CYCGRG | 2 cut(s) | 723, 2204 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2521 |
| EcoRII | CCWGG | 5 cut(s) | 338, 2464, 2469, 2642, 2658 |
| EcoRV | GATATC | 2 cut(s) | 931, 1945 |
| EcoT14I | CCWWGG | 3 cut(s) | 105, 535, 978 |
| EcoT22I | ATGCAT | 2 cut(s) | 2558, 2566 |
| ErhI | CCWWGG | 3 cut(s) | 105, 535, 978 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1173, 1205, 1230, 1262, 2617, 2649 |
| FauI | CCCGC | 1 cut(s) | 218 |
| FauNDI | CATATG | 1 cut(s) | 1457 |
| Fnu4HI | GCNGC | 4 cut(s) | 585, 699, 1003, 1994 |
| FokI | GGATG | 4 cut(s) | 122, 355, 488, 2620 |
| Fsp4HI | GCNGC | 4 cut(s) | 585, 699, 1003, 1994 |
| FspBI | CTAG | 6 cut(s) | 666, 1052, 1770, 1871, 1901, 1937 |
| FspI | TGCGCA | 1 cut(s) | 1358 |
| GlaI | GCGC | 3 cut(s) | 530, 1296, 1358 |
| GluI | GCNGC | 4 cut(s) | 585, 699, 1003, 1994 |
| HaeII | RGCGCY | 2 cut(s) | 532, 1298 |
| HaeIII | GGCC | 4 cut(s) | 1888, 2277, 2469, 2632 |
| HapII | CCGG | 2 cut(s) | 214, 2333 |
| HhaI | GCGC | 3 cut(s) | 531, 1297, 1359 |
| Hin6I | GCGC | 3 cut(s) | 529, 1295, 1357 |
| HinP1I | GCGC | 3 cut(s) | 529, 1295, 1357 |
| HincII | GTYRAC | 2 cut(s) | 52, 655 |
| HindII | GTYRAC | 2 cut(s) | 52, 655 |
| HindIII | AAGCTT | 4 cut(s) | 853, 1397, 2285, 2318 |
| HpaII | CCGG | 2 cut(s) | 214, 2333 |
| HphI | GGTGA | 4 cut(s) | 141, 214, 2040, 2111 |
| Hpy166II | GTNNAC | 5 cut(s) | 52, 655, 1352, 1839, 2481 |
| Hpy8I | GTNNAC | 5 cut(s) | 52, 655, 1352, 1839, 2481 |
| Hpy99I | CGWCG | 4 cut(s) | 182, 467, 475, 1991 |
| HpyCH4III | ACNGT | 6 cut(s) | 336, 369, 820, 1277, 1570, 2301 |
| HpyCH4IV | ACGT | 9 cut(s) | 180, 462, 683, 693, 1434, 1633, 1663, 1698, 1989 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 198, 526, 1294, 1603 |
| HpySE526I | ACGT | 9 cut(s) | 180, 462, 683, 693, 1434, 1633, 1663, 1698, 1989 |
| HspAI | GCGC | 3 cut(s) | 529, 1295, 1357 |
| Kpn2I | TCCGGA | 1 cut(s) | 2332 |
| LguI | GCTCTTC | 1 cut(s) | 1194 |
| LmnI | GCTCC | 2 cut(s) | 397, 1200 |
| Lsp1109I | GCAGC | 3 cut(s) | 571, 685, 1014 |
| LweI | GCATC | 6 cut(s) | 100, 152, 1788, 2176, 2440, 2485 |
| MaeI | CTAG | 6 cut(s) | 666, 1052, 1770, 1871, 1901, 1937 |
| MaeII | ACGT | 9 cut(s) | 180, 462, 683, 693, 1434, 1633, 1663, 1698, 1989 |
| MaeIII | GTNAC | 4 cut(s) | 1105, 1514, 1564, 2452 |
| MbiI | CCGCTC | 1 cut(s) | 2620 |
| MfeI | CAATTG | 1 cut(s) | 1124 |
| MflI | RGATCY | 3 cut(s) | 566, 2200, 2233 |
| MhlI | GDGCHC | 2 cut(s) | 1354, 2483 |
| MlyI | GAGTC | 5 cut(s) | 1085, 1152, 1731, 1963, 1976 |
| MmeI | TCCRAC | 5 cut(s) | 494, 736, 763, 781, 2010 |
| Mph1103I | ATGCAT | 2 cut(s) | 2558, 2566 |
| MroI | TCCGGA | 1 cut(s) | 2332 |
| MroXI | GAANNNNTTC | 5 cut(s) | 510, 718, 1188, 1242, 1920 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1686, 1879 |
| MspA1I | CMGCKG | 1 cut(s) | 125 |
| MspCI | CTTAAG | 1 cut(s) | 2501 |
| MspI | CCGG | 2 cut(s) | 214, 2333 |
| MspR9I | CCNGG | 5 cut(s) | 340, 2466, 2471, 2644, 2660 |
| MunI | CAATTG | 1 cut(s) | 1124 |
| Mva1269I | GAATGC | 1 cut(s) | 2397 |
| MvaI | CCWGG | 5 cut(s) | 340, 2466, 2471, 2644, 2660 |
| MvnI | CGCG | 1 cut(s) | 374 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 198, 526, 1294, 1603 |
| NcoI | CCATGG | 2 cut(s) | 105, 535 |
| NdeI | CATATG | 1 cut(s) | 1457 |
| NheI | GCTAGC | 1 cut(s) | 1870 |
| NlaIV | GGNNCC | 6 cut(s) | 389, 485, 605, 976, 1559, 2522 |
| NmuCI | GTSAC | 2 cut(s) | 1514, 2452 |
| NsbI | TGCGCA | 1 cut(s) | 1358 |
| NsiI | ATGCAT | 2 cut(s) | 2558, 2566 |
| NspI | RCATGY | 3 cut(s) | 524, 1158, 2564 |
| NspV | TTCGAA | 1 cut(s) | 1216 |
| PaeI | GCATGC | 1 cut(s) | 524 |
| PaeR7I | CTCGAG | 1 cut(s) | 723 |
| PagI | TCATGA | 1 cut(s) | 1681 |
| PceI | AGGCCT | 1 cut(s) | 2469 |
| PciI | ACATGT | 1 cut(s) | 1154 |
| PciSI | GCTCTTC | 1 cut(s) | 1194 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2411 |
| PctI | GAATGC | 1 cut(s) | 2397 |
| PdmI | GAANNNNTTC | 5 cut(s) | 510, 718, 1188, 1242, 1920 |
| PfeI | GAWTC | 7 cut(s) | 377, 719, 1536, 1757, 1784, 2116, 2368 |
| PfoI | TCCNGGA | 2 cut(s) | 338, 2642 |
| PkrI | GCNGC | 4 cut(s) | 586, 700, 1004, 1995 |
| PleI | GAGTC | 5 cut(s) | 1084, 1151, 1731, 1962, 1976 |
| PpsI | GAGTC | 5 cut(s) | 1084, 1151, 1731, 1962, 1976 |
| Ppu21I | YACGTR | 2 cut(s) | 684, 1634 |
| PpuMI | RGGWCCY | 1 cut(s) | 2521 |
| PscI | ACATGT | 1 cut(s) | 1154 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1953 |
| PshBI | ATTAAT | 1 cut(s) | 2570 |
| PsiI | TTATAA | 2 cut(s) | 641, 1592 |
| Psp1406I | AACGTT | 1 cut(s) | 1663 |
| Psp5II | RGGWCCY | 1 cut(s) | 2521 |
| Psp6I | CCWGG | 5 cut(s) | 338, 2464, 2469, 2642, 2658 |
| PspGI | CCWGG | 5 cut(s) | 338, 2464, 2469, 2642, 2658 |
| PspN4I | GGNNCC | 6 cut(s) | 389, 485, 605, 976, 1559, 2522 |
| PspPI | GGNCC | 4 cut(s) | 216, 336, 2521, 2646 |
| PspPPI | RGGWCCY | 1 cut(s) | 2521 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 668, 700 |
| PstNI | CAGNNNCTG | 2 cut(s) | 584, 2097 |
| PsuI | RGATCY | 3 cut(s) | 566, 2200, 2233 |
| PvuII | CAGCTG | 1 cut(s) | 125 |
| RsaI | GTAC | 6 cut(s) | 371, 686, 1014, 1632, 1780, 2133 |
| RsaNI | GTAC | 6 cut(s) | 370, 685, 1013, 1631, 1779, 2132 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1686, 1879 |
| SapI | GCTCTTC | 1 cut(s) | 1194 |
| SatI | GCNGC | 4 cut(s) | 585, 699, 1003, 1994 |
| Sau96I | GGNCC | 4 cut(s) | 216, 336, 2521, 2646 |
| SchI | GAGTC | 5 cut(s) | 1085, 1152, 1731, 1963, 1976 |
| ScrFI | CCNGG | 5 cut(s) | 340, 2466, 2471, 2644, 2660 |
| SduI | GDGCHC | 2 cut(s) | 1354, 2483 |
| SfaNI | GCATC | 6 cut(s) | 100, 152, 1788, 2176, 2440, 2485 |
| Sfr274I | CTCGAG | 1 cut(s) | 723 |
| SfuI | TTCGAA | 1 cut(s) | 1216 |
| SinI | GGWCC | 4 cut(s) | 216, 336, 2521, 2646 |
| SlaI | CTCGAG | 1 cut(s) | 723 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1686, 1879 |
| SmlI | CTYRAG | 6 cut(s) | 187, 392, 401, 723, 1997, 2501 |
| SmoI | CTYRAG | 6 cut(s) | 187, 392, 401, 723, 1997, 2501 |
| SphI | GCATGC | 1 cut(s) | 524 |
| SseBI | AGGCCT | 1 cut(s) | 2469 |
| SsiI | CCGC | 7 cut(s) | 211, 374, 503, 1801, 1898, 1993, 2620 |
| SspI | AATATT | 3 cut(s) | 453, 1503, 2153 |
| SspMI | CTAG | 6 cut(s) | 666, 1052, 1770, 1871, 1901, 1937 |
| StuI | AGGCCT | 1 cut(s) | 2469 |
| StyD4I | CCNGG | 5 cut(s) | 338, 2464, 2469, 2642, 2658 |
| StyI | CCWWGG | 3 cut(s) | 105, 535, 978 |
| TaaI | ACNGT | 6 cut(s) | 336, 369, 820, 1277, 1570, 2301 |
| TaiI | ACGT | 9 cut(s) | 183, 465, 686, 696, 1437, 1636, 1666, 1701, 1992 |
| TaqII | GACCGA | 1 cut(s) | 52 |
| TatI | WGTACW | 2 cut(s) | 1778, 2131 |
| TauI | GCSGC | 1 cut(s) | 1996 |
| TfiI | GAWTC | 7 cut(s) | 377, 719, 1536, 1757, 1784, 2116, 2368 |
| TscAI | CASTG | 9 cut(s) | 622, 967, 1296, 1359, 1660, 1846, 2278, 2378, 2461 |
| TseFI | GTSAC | 2 cut(s) | 1514, 2452 |
| TseI | GCWGC | 3 cut(s) | 584, 698, 1002 |
| Tsp45I | GTSAC | 2 cut(s) | 1514, 2452 |
| TspGWI | ACGGA | 2 cut(s) | 488, 1736 |
| TspRI | CASTG | 9 cut(s) | 622, 967, 1296, 1359, 1660, 1846, 2278, 2378, 2461 |
| Vha464I | CTTAAG | 1 cut(s) | 2501 |
| VneI | GTGCAC | 2 cut(s) | 1350, 2479 |
| VpaK11BI | GGWCC | 4 cut(s) | 216, 336, 2521, 2646 |
| VspI | ATTAAT | 1 cut(s) | 2570 |
| XapI | RAATTY | 5 cut(s) | 589, 786, 1241, 2355, 2460 |
| XceI | RCATGY | 3 cut(s) | 524, 1158, 2564 |
| XhoI | CTCGAG | 1 cut(s) | 723 |
| XmnI | GAANNNNTTC | 5 cut(s) | 510, 718, 1188, 1242, 1920 |
| XspI | CTAG | 6 cut(s) | 666, 1052, 1770, 1871, 1901, 1937 |
| Zsp2I | ATGCAT | 2 cut(s) | 2558, 2566 |