MD02G1041300.v1.1

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
3366922 .. 3370112
3191 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1041300.v1.1.491

Sequence Viewer

Length: 1842 bp
ATGGTGGATACCGCCATGACAGCGCACGAAGCCTCTTGTTCGTCCTCCTCCAAGTCAAAACTTTGGAGTTACGACGTGTTCTTGAGCTTTAGCGGCGAAGACACGCGCAATGGCTTCACCAGCCACCTCCACGAGGCGTTAAAATACAGAGGATACCATGTCTTTATTGATGAGGACGGTCTAAAAAGAGGGGAAGAAATAAGAGGGGAACTGTTTCGGGCAATCGAAGAGTCGAGGATCTCTATCATTGTCTTCTCAAAGATGTATGCGGATTCGAGTTGGTGTCTTGACGAGCTGGTGAAGATCATGGAGTGCAGAGACAAACTGGAGCGACATGTTTTGCCAATATTCTATCACGTTGATCCTTCGCATGTCAAGAAGCAGGACGGAGATTTTGCCGAAGCATTTCATAAACACGAAAAGGACATCCGTGAAGAAAAAGATGACGAGAAACGTGAAGCTAAACAAACAAGGGTAGAGCAGTGGAAAGGGGCTCTCACAAAAGCTGCAGATTTGTCTGGCCACCATCTTAAATCCAGTAATAATAGGAAGAGGCAGAGAGATCTTCATACTGAAGCTGCAAATTTGTCTGACCACCAAACAACTGACAACGGGCGCGAAGCAAAGTTCATTAAAAAAATTGTTGACGACAATATTTGGGAATGGCTCCCCAGAACAAACGAATTAAATGTGGCGAAGCACCCAATTGGAATCAAATCTCGCATTCAAGGTATTATCAGTGATCTTTCAAGTGGTGGATCAAATGATGTTCTCATGGTTGGAATTTGGGGGATGGGTGGATTGGGTAAAACAACAGCTGCCAAAGCCATTTATAACCAAATTCATCTTACGTTTGAATTCAAAAGTTTCCTTGCCGACGTTAGCGATGCTACAAGTAAACATGGTCTGGTTTATTTGCAAGAAAAACTTATTTCTGACATCTTAAAACAAAAGTCTGAATTAAGCAGTGTTGATGAAGGTATCAGTTTGATAAAACAACATCTCCAACGTAGAAGGGTACTTGTCATCATCGACAATATAGATGACCTGAAACAACTTGATGCAATAGCTGTAAGTCACAATTGTTTTGGTCCAGGAAGTAGAATTATTATAACGACACGAAATGAACATTTGCTAAAGCAAGTGGAAGTGGACAAGACATATCCGCTTCGAGAAATGAAAAAGAGAGAAGCTTTGGAGCTCTTTAGTTGGCATGCCTTTCGAAAAAGTTACCCTAATGAAGAATATCTTGAAGTCTCAGAAAAGGTTGTTTCTTACTGTGGAGGTTTGCCACTAGCCCTTGAAGTTTTAGGTTCTTTTTTGTTTAGAAGACCTATTGCAGAGTGGAAAAGTCAATTGAAGAAATTGGAAAGAACTCCTAAAGGAGAAATAATAAAACCACTAAGAATAAGCTTTGAAGGGCTAGATGATACAGAGAAGGCTATATTCCTTGACATATCTTGTTTCTTTATTGGAAAGGACAAAGACTACGTCGCAAAAGTATTAGATGGATGTGGATTTTTTGCAACAGGAGGAATCGGTGTCCTCCGTGAACGATGTCTTGTAACTATTGAAGGCAACAAGTTGACTATGCATGATTTGCTTCGAGAAATGGCCAGAGTAATCATTTCTGAAAAATCTCTTGATTGCCCTGGAAAATGGAGTAGGTTGTGGAATCGTCAAGAGGTCACTGATGTATTGACAAATAAATCTGAGTTTATTCCCAATAAATTTTGGATTTATGCATCATACAAGAAAAGCATAGATGTAACCCGGGCAAGTCAATTATACATTAAACAACATTCGTGTGTAAATATATTCACCGTGCGTGGTTTTGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

614

Amino Acids

70.17

Weight (kDa)

8.15

Isoelectric Point (pI)

37.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 24 - 184 1.1e-47 TIR domain
TIR_2 PF13676 26 - 127 7.1e-17 TIR domain
NB-ARC PF00931 241 - 409 1.1e-21 NB-ARC domain
WHD_ROQ1 PF23282 478 - 547 1.7e-14 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36930 AT5G36930 AT5G36930 AT5G36930
fragaria_vesca FvH4_3g45361 FvH4_3g45380 FvH4_5g21061 FvH4_5g21062 FvH4_5g21063 FvH4_5g32050 FvH4_5g32970 FvH4_5g32990 FvH4_5g34190 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34211 FvH4_5g34240 FvH4_5g34250
malus_domestica MD00G1011700.v1.1 MD00G1026100.v1.1 MD00G1026500.v1.1 MD00G1027000.v1.1 MD00G1027100.v1.1 MD00G1027700.v1.1 MD00G1027800.v1.1 MD00G1028000.v1.1 MD00G1220000.v1.1 MD02G1024400.v1.1 MD02G1024800.v1.1 MD02G1026000.v1.1 MD02G1026100.v1.1 MD02G1031800.v1.1 MD02G1038500.v1.1 MD02G1038700.v1.1 MD02G1039200.v1.1 MD02G1040600.v1.1 MD02G1040900.v1.1 MD02G1041200.v1.1 MD02G1041300.v1.1 MD02G1041700.v1.1 MD02G1042000.v1.1 MD02G1043800.v1.1 MD02G1043900.v1.1 MD02G1044300.v1.1 MD02G1045200.v1.1 MD02G1045300.v1.1 MD02G1051200.v1.1 MD02G1052200.v1.1 MD02G1052800.v1.1 MD02G1053100.v1.1 MD02G1053600.v1.1 MD02G1055500.v1.1 MD02G1063300.v1.1 MD02G1063400.v1.1 MD02G1063800.v1.1 MD02G1306500.v1.1 MD02G1306600.v1.1 MD02G1306700.v1.1 MD02G1306900.v1.1 MD02G1307200.v1.1 MD04G1011700.v1.1 MD05G1315400.v1.1 MD05G1316000.v1.1 MD05G1316700.v1.1 MD05G1317000.v1.1 MD05G1317300.v1.1 MD05G1317600.v1.1 MD05G1317700.v1.1 MD07G1102800.v1.1 MD07G1238200.v1.1 MD08G1175900.v1.1 MD08G1203600.v1.1 MD09G1024200.v1.1 MD09G1039600.v1.1 MD09G1044800.v1.1 MD09G1045100.v1.1 MD10G1038700.v1.1 MD10G1039000.v1.1 MD10G1039200.v1.1 MD10G1040000.v1.1 MD10G1040200.v1.1 MD10G1040600.v1.1 MD10G1040800.v1.1 MD10G1297300.v1.1 MD12G1247500.v1.1 MD12G1247900.v1.1 MD12G1248300.v1.1 MD12G1248800.v1.1 MD15G1103700.v1.1 MD15G1103800.v1.1 MD15G1104000.v1.1 MD15G1179600.v1.1 MD15G1182500.v1.1 MD16G1068200.v1.1 MD16G1068300.v1.1 MD17G1024600.v1.1 MD17G1024700.v1.1 MD17G1025000.v1.1 MD17G1025900.v1.1
prunus_persica Prupe.1G539800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G557100_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557300_v2.0.a1
pyrus_communis pycom02g02080 pycom02g02090 pycom02g02110 pycom02g03220 pycom02g03260 pycom02g03370 pycom02g03390 pycom02g03410 pycom02g03420 pycom02g03450 pycom02g03500 pycom02g03730 pycom02g03770 pycom02g04400 pycom02g04410 pycom02g04430 pycom02g04450 pycom02g04460 pycom02g04490 pycom02g05200 pycom02g25710 pycom02g25750 pycom02g25790 pycom02g25810 pycom02g25830 pycom04g00920 pycom04g00930 pycom04g00940 pycom05g29300 pycom05g29310 pycom05g29380 pycom05g29410 pycom07g06310 pycom07g21420 pycom08g15070 pycom08g17540 pycom08g17560 pycom08g17570 pycom10g02670 pycom10g02680 pycom10g02700 pycom10g02770 pycom10g02790 pycom10g02800 pycom10g02810 pycom10g25020 pycom10g25030 pycom10g25050 pycom10g25080 pycom111g01990 pycom111g02000 pycom111g02030 pycom111g02040 pycom111g02050 pycom111g02060 pycom12g22710 pycom12g22720 pycom12g22730 pycom12g22740 pycom12g22750 pycom12g22770 pycom12g22780 pycom12g22790 pycom12g22800 pycom12g22810 pycom12g22830 pycom12g22840 pycom12g22860 pycom15g09440 pycom15g09480 pycom15g16120 pycom15g32380 pycom16g05970 pycom17g02100
rosa_chinensis RchiOBHm_Chr2g0144661 RchiOBHm_Chr4g0407491 RchiOBHm_Chr4g0407501 RchiOBHm_Chr4g0412381 RchiOBHm_Chr7g0208191 RchiOBHm_Chr7g0208201 RchiOBHm_Chr7g0208211 RchiOBHm_Chr7g0208221 RchiOBHm_Chr7g0228071 RchiOBHm_Chr7g0228121 RchiOBHm_Chr7g0230971 RchiOBHm_Chr7g0230981 RchiOBHm_Chr7g0233901 RchiOBHm_Chr7g0233951 RchiOBHm_Chr7g0233961 RchiOBHm_Chr7g0233991 RchiOBHm_Chr7g0234021 RchiOBHm_Chr7g0234151 RchiOBHm_Chr7g0234161 RchiOBHm_Chr7g0234241 RchiOBHm_Chr7g0234501 RchiOBHm_Chr7g0234641 RchiOBHm_Chr7g0234771 RchiOBHm_Chr7g0234781 RchiOBHm_Chr7g0234991 RchiOBHm_Chr7g0241291 RchiOBHm_Chr7g0241301
rosa_laevigata RLG00000001186 RLG00000001187 RLG00000001212 RLG00000001226 RLG00000001233 RLG00000001590 RLG00000003242 RLG00000003243 RLG00000003249 RLG00000008688 RLG00000008690
rosa_multiflora Rmu_co7966574.1_g000001 Rmu_co8120830.1_g000001 Rmu_co8142226.1_g000001 Rmu_co8293083.1_g000001 Rmu_co8351227.1_g000001 Rmu_co8380159.1_g000001 Rmu_co8456505.1_g000001 Rmu_sc0000676.1_g000025 Rmu_sc0000706.1_g000018 Rmu_sc0000706.1_g000040 Rmu_sc0000740.1_g000029 Rmu_sc0000740.1_g000032 Rmu_sc0000740.1_g000037 Rmu_sc0000740.1_g000040 Rmu_sc0000762.1_g000003 Rmu_sc0000762.1_g000019 Rmu_sc0000762.1_g000034 Rmu_sc0000762.1_g000069 Rmu_sc0000892.1_g000001 Rmu_sc0000945.1_g000040 Rmu_sc0001913.1_g000037 Rmu_sc0001913.1_g000041 Rmu_sc0001913.1_g000049 Rmu_sc0002775.1_g000017 Rmu_sc0002775.1_g000018 Rmu_sc0002775.1_g000020 Rmu_sc0002775.1_g000021 Rmu_sc0002775.1_g000022 Rmu_sc0002775.1_g000025 Rmu_sc0002775.1_g000026 Rmu_sc0002775.1_g000028 Rmu_sc0002775.1_g000030 Rmu_sc0004858.1_g000002 Rmu_sc0004864.1_g000022 Rmu_sc0005038.1_g000023 Rmu_sc0005840.1_g000014 Rmu_sc0006724.1_g000003 Rmu_sc0006824.1_g000005 Rmu_sc0007869.1_g000003 Rmu_sc0007869.1_g000005 Rmu_sc0007869.1_g000008 Rmu_sc0008646.1_g000007 Rmu_sc0009637.1_g000009 Rmu_sc0010500.1_g000002 Rmu_sc0010500.1_g000012 Rmu_sc0012403.1_g000025 Rmu_sc0013768.1_g000025 Rmu_sc0015625.1_g000001 Rmu_sc0019715.1_g000001 Rmu_sc0021133.1_g000002 Rmu_sc0021904.1_g000001 Rmu_sc0021904.1_g000003 Rmu_sc0021904.1_g000004 Rmu_sc0022054.1_g000001 Rmu_sc0026025.1_g000001 Rmu_sc0036828.1_g000002 Rmu_sc0041808.1_g000001 Rmu_ssc0000012.1_g000001
rosa_roxburghii Rroxscaffold_3G00226370 Rroxscaffold_3G00226860 Rroxscaffold_3G00226900 Rroxscaffold_3G00226930 Rroxscaffold_3G00226940 Rroxscaffold_3G00226970 Rroxscaffold_3G00226980 Rroxscaffold_3G00231530 Rroxscaffold_3G00237090 Rroxscaffold_3G00250760 Rroxscaffold_3G00250800
rosa_rugosa Rorug04G0082300 Rorug07G0101800 Rorug07G0102000 Rorug07G0102100 Rorug07G0221200 Rorug07G0245700 Rorug07G0245700 Rorug07G0245700 Rorug07G0263900 Rorug07G0264000 Rorug07G0264000 Rorug07G0264500 Rorug07G0282900 Rorug07G0282900 Rorug07G0283100 Rorug07G0283200.1 Rorug07G0283300 Rorug07G0283900 Rorug07G0284000 Rorug07G0284100 Rorug07G0284300 Rorug07G0284400 Rorug07G0284500 Rorug07G0285000 Rorug07G0285200 Rorug07G0285300 Rorug07G0285500 Rorug07G0286800 Rorug07G0286900 Rorug07G0287100 Rorug07G0287200
rosa_samantha Rh7AG236100 Rh7AG236200 Rh7AG236300 Rh7AG440000 Rh7AG440100 Rh7BG411900 Rh7BG412000 Rh7BG412600 Rh7CG251300 Rh7CG417700 Rh7CG460100 Rh7DG242100 Rh7DG242200 Rh7DG242300 Rh7DG429300
rosa_wichuraiana Rw0G005070 Rw0G010780 Rw0G012530 Rw7G020110 Rw7G020160 Rw7G020170 Rw7G033210 Rw7G033230 Rw7G033250 Rw7G034540 Rw7G035150 Rw7G036190 Rw7G036210 Rw7G036260 Rw7G036270 Rw7G036290 Rw7G036300 Rw7G036310 Rw7G036350 Rw7G036360 Rw7G036440 Rw7G036510 Rw7G036530 Rw7G036570 Rw7G036590 Rw7G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 834, 1112
AccII CGCG 2 cut(s) 106, 618
AciI CCGC 4 cut(s) 12, 93, 269, 1166
AclWI GGATC 3 cut(s) 245, 356, 766
AcoI YGGCCR 2 cut(s) 520, 1614
AcsI RAATTY 5 cut(s) 583, 783, 840, 857, 1730
AcuI CTGAAG 1 cut(s) 594
AfaI GTAC 1 cut(s) 1020
AfiI CCNNNNNNNGG 1 cut(s) 133
AflIII ACRYGT 2 cut(s) 75, 334
AgsI TTSAA 9 cut(s) 728, 750, 857, 862, 1253, 1304, 1360, 1418, 1574
AjiI CACGTC 1 cut(s) 76
AjnI CCWGG 2 cut(s) 1093, 1651
Alw21I GWGCWC 1 cut(s) 1203
Alw26I GTCTC 2 cut(s) 312, 1261
AlwI GGATC 3 cut(s) 245, 356, 766
Ama87I CYCGRG 1 cut(s) 1773
AoxI GGCC 2 cut(s) 520, 1614
ApeKI GCWGC 3 cut(s) 506, 578, 818
ApoI RAATTY 5 cut(s) 583, 783, 840, 857, 1730
ArsI GACNNNNNNTTYG 4 cut(s) 377, 409, 1476, 1508
Asp700I GAANNNNTTC 2 cut(s) 213, 405
AspLEI GCGC 3 cut(s) 25, 108, 618
AspS9I GGNCC 1 cut(s) 1091
AsuC2I CCSGG 2 cut(s) 1774, 1775
AsuHPI GGTGA 3 cut(s) 109, 310, 1813
AsuII TTCGAA 1 cut(s) 1222
AvaI CYCGRG 1 cut(s) 1773
AvaII GGWCC 1 cut(s) 1091
BalI TGGCCA 2 cut(s) 522, 1616
BanII GRGCYC 2 cut(s) 496, 1203
BauI CACGAG 1 cut(s) 131
BbsI GAAGAC 3 cut(s) 105, 244, 1336
Bbv12I GWGCWC 1 cut(s) 1203
BbvI GCAGC 3 cut(s) 493, 565, 805
BccI CCATC 3 cut(s) 534, 787, 1502
BcgI CGANNNNNNTGC 2 cut(s) 1202, 1236
BciT130I CCWGG 2 cut(s) 1095, 1653
BciVI GTATCC 1 cut(s) 146
BcnI CCSGG 2 cut(s) 1774, 1775
BcoDI GTCTC 2 cut(s) 312, 1261
BfaI CTAG 2 cut(s) 1295, 1424
BfmI CTRYAG 1 cut(s) 507
BfuI GTATCC 1 cut(s) 146
BglII AGATCT 1 cut(s) 562
BisI GCNGC 4 cut(s) 94, 507, 579, 819
BlsI GCNGC 4 cut(s) 95, 508, 580, 820
Bme1390I CCNGG 4 cut(s) 1095, 1653, 1774, 1775
Bme18I GGWCC 1 cut(s) 1091
BmeT110I CYCGRG 1 cut(s) 1773
BmgBI CACGTC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 1091
BmiI GGNNCC 1 cut(s) 668
BmrFI CCNGG 4 cut(s) 1095, 1653, 1774, 1775
BmsI GCATC 3 cut(s) 877, 1051, 1754
BpiI GAAGAC 3 cut(s) 105, 244, 1336
BpmI CTGGAG 1 cut(s) 347
Bpu14I TTCGAA 1 cut(s) 1222
BpuEI CTTGAG 1 cut(s) 103
BpuMI CCSGG 2 cut(s) 1774, 1775
BsaBI GATNNNNATC 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 1651, 1773
BsaXI ACNNNNNCTCC 2 cut(s) 987, 1017
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse1I ACTGG 2 cut(s) 330, 537
Bse3DI GCAATG 1 cut(s) 115
Bse8I GATNNNNATC 1 cut(s) 242
BseBI CCWGG 2 cut(s) 1095, 1653
BseDI CCNNGG 2 cut(s) 1651, 1773
BseGI GGATG 3 cut(s) 426, 798, 1517
BseJI GATNNNNATC 1 cut(s) 242
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMI GCAATG 1 cut(s) 115
BseMII CTCAG 2 cut(s) 1272, 1704
BseNI ACTGG 2 cut(s) 330, 537
BseRI GAGGAG 1 cut(s) 37
BseXI GCAGC 3 cut(s) 493, 565, 805
BsgI GTGCAG 1 cut(s) 334
Bsh1236I CGCG 2 cut(s) 106, 618
BshFI GGCC 2 cut(s) 522, 1616
BsiHKAI GWGCWC 1 cut(s) 1203
BsiHKCI CYCGRG 1 cut(s) 1773
BsiSI CCGG 1 cut(s) 1774
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 2 cut(s) 312, 1261
BsmI GAATGC 1 cut(s) 723
BsnI GGCC 2 cut(s) 522, 1616
BsoBI CYCGRG 1 cut(s) 1773
Bsp119I TTCGAA 1 cut(s) 1222
Bsp1286I GDGCHC 2 cut(s) 496, 1203
Bsp143I GATC 6 cut(s) 237, 303, 361, 562, 742, 758
BspACI CCGC 4 cut(s) 12, 93, 269, 1166
BspANI GGCC 2 cut(s) 522, 1616
BspCNI CTCAG 2 cut(s) 1271, 1705
BspFNI CGCG 2 cut(s) 106, 618
BspLI GGNNCC 1 cut(s) 668
BspMAI CTGCAG 1 cut(s) 511
BspPI GGATC 3 cut(s) 245, 356, 766
BspT104I TTCGAA 1 cut(s) 1222
BsrDI GCAATG 1 cut(s) 115
BsrI ACTGG 2 cut(s) 330, 537
BssECI CCNNGG 2 cut(s) 1651, 1773
BssMI GATC 6 cut(s) 237, 303, 361, 562, 742, 758
BssSI CACGAG 1 cut(s) 131
Bst2BI CACGAG 1 cut(s) 131
Bst2UI CCWGG 2 cut(s) 1095, 1653
Bst4CI ACNGT 4 cut(s) 179, 213, 1280, 1825
Bst6I CTCTTC 2 cut(s) 222, 545
BstAPI GCANNNNNTGC 1 cut(s) 1600
BstBI TTCGAA 1 cut(s) 1222
BstC8I GCNNGC 1 cut(s) 1215
BstDEI CTNAG 3 cut(s) 1258, 1403, 1713
BstENI CCTNNNNNAGG 1 cut(s) 131
BstF5I GGATG 3 cut(s) 426, 798, 1517
BstFNI CGCG 2 cut(s) 106, 618
BstHHI GCGC 3 cut(s) 25, 108, 618
BstKTI GATC 6 cut(s) 240, 306, 364, 565, 745, 761
BstMAI GTCTC 2 cut(s) 312, 1261
BstMBI GATC 6 cut(s) 237, 303, 361, 562, 742, 758
BstMWI GCNNNNNNNGC 6 cut(s) 20, 29, 93, 120, 824, 1600
BstNI CCWGG 2 cut(s) 1095, 1653
BstNSI RCATGY 3 cut(s) 338, 374, 1217
BstSCI CCNGG 4 cut(s) 1093, 1651, 1772, 1773
BstSFI CTRYAG 1 cut(s) 507
BstUI CGCG 2 cut(s) 106, 618
BstV1I GCAGC 3 cut(s) 493, 565, 805
BstV2I GAAGAC 3 cut(s) 105, 244, 1336
BstX2I RGATCY 2 cut(s) 237, 562
BstYI RGATCY 2 cut(s) 237, 562
BsuI GTATCC 1 cut(s) 146
BsuRI GGCC 2 cut(s) 522, 1616
BtgZI GCGATG 1 cut(s) 900
BtrI CACGTC 1 cut(s) 76
BtsCI GGATG 3 cut(s) 426, 798, 1517
BtsI GCAGTG 2 cut(s) 488, 973
BtsIMutI CAGTG 4 cut(s) 488, 745, 973, 1689
Cac8I GCNNGC 1 cut(s) 1215
CfoI GCGC 3 cut(s) 25, 108, 618
Cfr13I GGNCC 1 cut(s) 1091
Cfr9I CCCGGG 1 cut(s) 1773
Csp6I GTAC 1 cut(s) 1019
CviAII CATG 9 cut(s) 16, 158, 307, 335, 371, 775, 902, 1214, 1595
CviQI GTAC 1 cut(s) 1019
DdeI CTNAG 3 cut(s) 1258, 1403, 1713
DpnI GATC 6 cut(s) 239, 305, 363, 564, 744, 760
DpnII GATC 6 cut(s) 237, 303, 361, 562, 742, 758
EaeI YGGCCR 2 cut(s) 520, 1614
Eam1104I CTCTTC 2 cut(s) 222, 545
EarI CTCTTC 2 cut(s) 222, 545
Ecl136II GAGCTC 1 cut(s) 1201
Eco24I GRGCYC 2 cut(s) 496, 1203
Eco47I GGWCC 1 cut(s) 1091
Eco53kI GAGCTC 1 cut(s) 1201
Eco57I CTGAAG 1 cut(s) 594
Eco88I CYCGRG 1 cut(s) 1773
EcoICRI GAGCTC 1 cut(s) 1201
EcoNI CCTNNNNNAGG 1 cut(s) 131
EcoRI GAATTC 1 cut(s) 857
EcoRII CCWGG 2 cut(s) 1093, 1651
EcoT22I ATGCAT 2 cut(s) 1596, 1747
EcoT38I GRGCYC 2 cut(s) 496, 1203
FaeI CATG 9 cut(s) 19, 161, 310, 338, 374, 778, 905, 1217, 1598
FalI AAGNNNNNCTT 4 cut(s) 912, 944, 1233, 1265
FatI CATG 9 cut(s) 15, 157, 306, 334, 370, 774, 901, 1213, 1594
Fnu4HI GCNGC 4 cut(s) 94, 507, 579, 819
FokI GGATG 3 cut(s) 413, 805, 1524
FriOI GRGCYC 2 cut(s) 496, 1203
Fsp4HI GCNGC 4 cut(s) 94, 507, 579, 819
FspBI CTAG 2 cut(s) 1295, 1424
GlaI GCGC 3 cut(s) 24, 107, 617
GluI GCNGC 4 cut(s) 94, 507, 579, 819
GsuI CTGGAG 1 cut(s) 347
HaeIII GGCC 2 cut(s) 522, 1616
HapII CCGG 1 cut(s) 1774
HhaI GCGC 3 cut(s) 25, 108, 618
Hin1II CATG 9 cut(s) 19, 161, 310, 338, 374, 778, 905, 1217, 1598
Hin6I GCGC 3 cut(s) 23, 106, 616
HinP1I GCGC 3 cut(s) 23, 106, 616
HincII GTYRAC 2 cut(s) 646, 1587
HindII GTYRAC 2 cut(s) 646, 1587
HindIII AAGCTT 2 cut(s) 1191, 1411
HinfI GANTC 5 cut(s) 230, 272, 711, 1536, 1675
HpaII CCGG 1 cut(s) 1774
HphI GGTGA 3 cut(s) 109, 310, 1813
Hpy166II GTNNAC 5 cut(s) 646, 899, 1153, 1553, 1587
Hpy188I TCNGA 6 cut(s) 592, 937, 958, 1261, 1633, 1714
Hpy188III TCNNGA 8 cut(s) 82, 287, 376, 1172, 1250, 1607, 1643, 1682
Hpy8I GTNNAC 5 cut(s) 646, 899, 1153, 1553, 1587
Hpy99I CGWCG 3 cut(s) 77, 881, 1496
HpyAV CCTTC 6 cut(s) 375, 971, 1008, 1412, 1432, 1568
HpyCH4III ACNGT 4 cut(s) 179, 213, 1280, 1825
HpyCH4IV ACGT 7 cut(s) 75, 357, 454, 851, 879, 1009, 1491
HpyCH4V TGCA 9 cut(s) 315, 509, 581, 919, 1064, 1340, 1526, 1594, 1745
HpyF10VI GCNNNNNNNGC 6 cut(s) 20, 29, 93, 120, 824, 1600
HpyF3I CTNAG 3 cut(s) 1258, 1403, 1713
HpySE526I ACGT 7 cut(s) 75, 357, 454, 851, 879, 1009, 1491
Hsp92II CATG 9 cut(s) 19, 161, 310, 338, 374, 778, 905, 1217, 1598
HspAI GCGC 3 cut(s) 23, 106, 616
Kzo9I GATC 6 cut(s) 237, 303, 361, 562, 742, 758
LmnI GCTCC 3 cut(s) 328, 672, 1198
Lsp1109I GCAGC 3 cut(s) 493, 565, 805
LweI GCATC 3 cut(s) 877, 1051, 1754
MaeI CTAG 2 cut(s) 1295, 1424
MaeII ACGT 7 cut(s) 75, 357, 454, 851, 879, 1009, 1491
MaeIII GTNAC 6 cut(s) 68, 1076, 1229, 1564, 1687, 1768
MalI GATC 6 cut(s) 239, 305, 363, 564, 744, 760
MboI GATC 6 cut(s) 237, 303, 361, 562, 742, 758
MfeI CAATTG 3 cut(s) 705, 1081, 1355
MflI RGATCY 2 cut(s) 237, 562
MhlI GDGCHC 2 cut(s) 496, 1203
MlsI TGGCCA 2 cut(s) 522, 1616
MluNI TGGCCA 2 cut(s) 522, 1616
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 2 cut(s) 760, 1030
Mox20I TGGCCA 2 cut(s) 522, 1616
Mph1103I ATGCAT 2 cut(s) 1596, 1747
MroXI GAANNNNTTC 2 cut(s) 213, 405
MscI TGGCCA 2 cut(s) 522, 1616
MseI TTAA 7 cut(s) 140, 531, 633, 686, 944, 962, 1794
MslI CAYNNNNRTG 1 cut(s) 1806
Msp20I TGGCCA 2 cut(s) 522, 1616
MspA1I CMGCKG 1 cut(s) 818
MspI CCGG 1 cut(s) 1774
MspR9I CCNGG 4 cut(s) 1095, 1653, 1774, 1775
MunI CAATTG 3 cut(s) 705, 1081, 1355
Mva1269I GAATGC 1 cut(s) 723
MvaI CCWGG 2 cut(s) 1095, 1653
MvnI CGCG 2 cut(s) 106, 618
MwoI GCNNNNNNNGC 6 cut(s) 20, 29, 93, 120, 824, 1600
NciI CCSGG 2 cut(s) 1774, 1775
NdeII GATC 6 cut(s) 237, 303, 361, 562, 742, 758
NlaIII CATG 9 cut(s) 19, 161, 310, 338, 374, 778, 905, 1217, 1598
NlaIV GGNNCC 1 cut(s) 668
NmuCI GTSAC 2 cut(s) 1076, 1687
NsiI ATGCAT 2 cut(s) 1596, 1747
NspI RCATGY 3 cut(s) 338, 374, 1217
NspV TTCGAA 1 cut(s) 1222
PaeI GCATGC 1 cut(s) 1217
PciI ACATGT 1 cut(s) 334
PctI GAATGC 1 cut(s) 723
PdmI GAANNNNTTC 2 cut(s) 213, 405
PfeI GAWTC 4 cut(s) 272, 711, 1536, 1675
PflFI GACNNNGTC 1 cut(s) 1490
PfoI TCCNGGA 1 cut(s) 1093
PkrI GCNGC 4 cut(s) 95, 508, 580, 820
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PscI ACATGT 1 cut(s) 334
PsiI TTATAA 2 cut(s) 834, 1112
Psp124BI GAGCTC 1 cut(s) 1203
Psp6I CCWGG 2 cut(s) 1093, 1651
PspGI CCWGG 2 cut(s) 1093, 1651
PspN4I GGNNCC 1 cut(s) 668
PspPI GGNCC 1 cut(s) 1091
PstI CTGCAG 1 cut(s) 511
PsuI RGATCY 2 cut(s) 237, 562
PsyI GACNNNGTC 1 cut(s) 1490
PvuII CAGCTG 1 cut(s) 818
RsaI GTAC 1 cut(s) 1020
RsaNI GTAC 1 cut(s) 1019
RseI CAYNNNNRTG 1 cut(s) 1806
SacI GAGCTC 1 cut(s) 1203
SaqAI TTAA 7 cut(s) 140, 531, 633, 686, 944, 962, 1794
SatI GCNGC 4 cut(s) 94, 507, 579, 819
Sau3AI GATC 6 cut(s) 237, 303, 361, 562, 742, 758
Sau96I GGNCC 1 cut(s) 1091
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 4 cut(s) 1095, 1653, 1774, 1775
SduI GDGCHC 2 cut(s) 496, 1203
SfaNI GCATC 3 cut(s) 877, 1051, 1754
SfcI CTRYAG 1 cut(s) 507
SfuI TTCGAA 1 cut(s) 1222
SinI GGWCC 1 cut(s) 1091
SmaI CCCGGG 1 cut(s) 1775
SmiMI CAYNNNNRTG 1 cut(s) 1806
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
SphI GCATGC 1 cut(s) 1217
SsiI CCGC 4 cut(s) 12, 93, 269, 1166
SspI AATATT 2 cut(s) 348, 655
SspMI CTAG 2 cut(s) 1295, 1424
SstI GAGCTC 1 cut(s) 1203
StyD4I CCNGG 4 cut(s) 1093, 1651, 1772, 1773
TaaI ACNGT 4 cut(s) 179, 213, 1280, 1825
TaiI ACGT 7 cut(s) 78, 360, 457, 854, 882, 1012, 1494
TaqI TCGA 7 cut(s) 225, 233, 275, 1032, 1171, 1222, 1606
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 4 cut(s) 272, 711, 1536, 1675
Tru1I TTAA 7 cut(s) 140, 531, 633, 686, 944, 962, 1794
Tru9I TTAA 7 cut(s) 140, 531, 633, 686, 944, 962, 1794
TscAI CASTG 4 cut(s) 488, 745, 973, 1696
TseFI GTSAC 2 cut(s) 1076, 1687
TseI GCWGC 3 cut(s) 506, 578, 818
Tsp45I GTSAC 2 cut(s) 1076, 1687
TspDTI ATGAA 8 cut(s) 398, 557, 619, 833, 990, 1140, 1193, 1254
TspGWI ACGGA 3 cut(s) 402, 419, 1538
TspMI CCCGGG 1 cut(s) 1773
TspRI CASTG 4 cut(s) 488, 745, 973, 1696
Tth111I GACNNNGTC 1 cut(s) 1490
VpaK11BI GGWCC 1 cut(s) 1091
XagI CCTNNNNNAGG 1 cut(s) 131
XapI RAATTY 5 cut(s) 583, 783, 840, 857, 1730
XceI RCATGY 3 cut(s) 338, 374, 1217
XmaI CCCGGG 1 cut(s) 1773
XmnI GAANNNNTTC 2 cut(s) 213, 405
XspI CTAG 2 cut(s) 1295, 1424
Zsp2I ATGCAT 2 cut(s) 1596, 1747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.