TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 23 - 193 | 1.3e-51 | TIR domain |
| TIR_2 | PF13676 | 25 - 121 | 3.1e-15 | TIR domain |
| NB-ARC | PF00931 | 219 - 377 | 1.5e-16 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 445 - 516 | 2.9e-18 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 711 - 827 | 2.2e-08 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3149 |
| Acc36I | ACCTGC | 1 cut(s) | 216 |
| AccB1I | GGYRCC | 1 cut(s) | 279 |
| AccI | GTMKAC | 1 cut(s) | 562 |
| AccII | CGCG | 1 cut(s) | 40 |
| AciI | CCGC | 3 cut(s) | 1182, 2296, 3513 |
| AclWI | GGATC | 6 cut(s) | 504, 890, 1222, 1669, 2451, 2628 |
| AcoI | YGGCCR | 2 cut(s) | 1285, 2297 |
| AcsI | RAATTY | 7 cut(s) | 734, 1206, 1290, 1543, 1632, 2153, 2476 |
| AcuI | CTGAAG | 9 cut(s) | 70, 492, 1082, 1105, 1608, 1647, 1931, 2586, 3089 |
| AcyI | GRCGYC | 1 cut(s) | 1462 |
| AfaI | GTAC | 7 cut(s) | 68, 447, 599, 921, 1684, 1862, 1875 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1294, 2858, 3056 |
| AflII | CTTAAG | 1 cut(s) | 1304 |
| AflIII | ACRYGT | 3 cut(s) | 72, 101, 426 |
| AhlI | ACTAGT | 2 cut(s) | 1870, 3443 |
| AjiI | CACGTC | 3 cut(s) | 73, 104, 3194 |
| AjnI | CCWGG | 4 cut(s) | 222, 254, 1558, 2980 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1241, 1273 |
| Alw21I | GWGCWC | 3 cut(s) | 466, 1743, 2094 |
| Alw26I | GTCTC | 8 cut(s) | 128, 895, 1454, 1509, 2334, 2403, 3264, 3384 |
| AlwI | GGATC | 6 cut(s) | 504, 890, 1222, 1669, 2451, 2628 |
| Ama87I | CYCGRG | 5 cut(s) | 618, 1241, 1618, 1979, 2851 |
| AoxI | GGCC | 6 cut(s) | 91, 144, 1285, 2284, 2297, 2571 |
| ApeKI | GCWGC | 5 cut(s) | 476, 793, 2760, 2898, 3290 |
| ApoI | RAATTY | 7 cut(s) | 734, 1206, 1290, 1543, 1632, 2153, 2476 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 613, 825, 1095, 1533, 1543, 1632 |
| AspS9I | GGNCC | 2 cut(s) | 145, 228 |
| AsuC2I | CCSGG | 3 cut(s) | 2852, 2853, 3311 |
| AsuHPI | GGTGA | 7 cut(s) | 106, 1006, 1931, 1944, 2015, 2324, 3325 |
| AsuII | TTCGAA | 1 cut(s) | 1537 |
| AsuNHI | GCTAGC | 1 cut(s) | 2206 |
| AvaI | CYCGRG | 5 cut(s) | 618, 1241, 1618, 1979, 2851 |
| AvaII | GGWCC | 1 cut(s) | 228 |
| AxyI | CCTNAGG | 1 cut(s) | 2657 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 437, 470 |
| BalI | TGGCCA | 1 cut(s) | 1287 |
| BanI | GGYRCC | 1 cut(s) | 279 |
| BanII | GRGCYC | 2 cut(s) | 1743, 2094 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 451, 483 |
| BbsI | GAAGAC | 3 cut(s) | 241, 382, 2513 |
| Bbv12I | GWGCWC | 3 cut(s) | 466, 1743, 2094 |
| BbvI | GCAGC | 5 cut(s) | 463, 805, 2747, 2885, 3302 |
| BceAI | ACGGC | 2 cut(s) | 105, 578 |
| BciT130I | CCWGG | 4 cut(s) | 224, 256, 1560, 2982 |
| BciVI | GTATCC | 1 cut(s) | 2200 |
| BclI | TGATCA | 1 cut(s) | 3372 |
| BcnI | CCSGG | 3 cut(s) | 2852, 2853, 3311 |
| BcoDI | GTCTC | 8 cut(s) | 128, 895, 1454, 1509, 2334, 2403, 3264, 3384 |
| BcuI | ACTAGT | 2 cut(s) | 1870, 3443 |
| BfmI | CTRYAG | 3 cut(s) | 510, 1071, 1856 |
| BfrI | CTTAAG | 1 cut(s) | 1304 |
| BfuAI | ACCTGC | 1 cut(s) | 216 |
| BfuI | GTATCC | 1 cut(s) | 2200 |
| BglII | AGATCT | 2 cut(s) | 1759, 2536 |
| BisI | GCNGC | 7 cut(s) | 477, 794, 2297, 2761, 2899, 3291, 3513 |
| BlpI | GCTNAGC | 1 cut(s) | 2801 |
| BlsI | GCNGC | 7 cut(s) | 478, 795, 2298, 2762, 2900, 3292, 3514 |
| Bme1390I | CCNGG | 7 cut(s) | 224, 256, 1560, 2852, 2853, 2982, 3311 |
| Bme18I | GGWCC | 1 cut(s) | 228 |
| BmeT110I | CYCGRG | 5 cut(s) | 618, 1241, 1618, 1979, 2851 |
| BmgBI | CACGTC | 3 cut(s) | 73, 104, 3194 |
| BmgT120I | GGNCC | 2 cut(s) | 145, 228 |
| BmiI | GGNNCC | 3 cut(s) | 229, 281, 1583 |
| BmrFI | CCNGG | 7 cut(s) | 224, 256, 1560, 2852, 2853, 2982, 3311 |
| BmrI | ACTGGG | 2 cut(s) | 335, 596 |
| BmsI | GCATC | 6 cut(s) | 35, 1488, 1887, 2814, 2979, 3475 |
| BmtI | GCTAGC | 1 cut(s) | 2210 |
| BmuI | ACTGGG | 2 cut(s) | 335, 596 |
| BoxI | GACNNNNGTC | 1 cut(s) | 102 |
| BpiI | GAAGAC | 3 cut(s) | 241, 382, 2513 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 448, 480 |
| BpmI | CTGGAG | 4 cut(s) | 238, 1767, 2510, 3196 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2801 |
| Bpu14I | TTCGAA | 1 cut(s) | 1537 |
| BpuEI | CTTGAG | 7 cut(s) | 100, 305, 862, 2069, 2215, 2468, 2900 |
| BpuMI | CCSGG | 3 cut(s) | 2852, 2853, 3311 |
| Bsa29I | ATCGAT | 1 cut(s) | 612 |
| BsaAI | YACGTR | 2 cut(s) | 427, 1735 |
| BsaBI | GATNNNNATC | 1 cut(s) | 942 |
| BsaHI | GRCGYC | 1 cut(s) | 1462 |
| BsaI | GGTCTC | 2 cut(s) | 1454, 2334 |
| BsaJI | CCNNGG | 7 cut(s) | 223, 1558, 2016, 2851, 2980, 2999, 3198 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3261, 3291 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1294, 2858, 3056 |
| Bse118I | RCCGGY | 1 cut(s) | 1192 |
| Bse1I | ACTGG | 9 cut(s) | 297, 341, 388, 602, 989, 1750, 2026, 2110, 3213 |
| Bse21I | CCTNAGG | 1 cut(s) | 2657 |
| Bse8I | GATNNNNATC | 1 cut(s) | 942 |
| BseBI | CCWGG | 4 cut(s) | 224, 256, 1560, 2982 |
| BseCI | ATCGAT | 1 cut(s) | 612 |
| BseDI | CCNNGG | 7 cut(s) | 223, 1558, 2016, 2851, 2980, 2999, 3198 |
| BseJI | GATNNNNATC | 1 cut(s) | 942 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1294, 2858, 3056 |
| BseMII | CTCAG | 6 cut(s) | 193, 463, 2527, 2671, 2738, 2792 |
| BseNI | ACTGG | 9 cut(s) | 297, 341, 388, 602, 989, 1750, 2026, 2110, 3213 |
| BseXI | GCAGC | 5 cut(s) | 463, 805, 2747, 2885, 3302 |
| BseYI | CCCAGC | 2 cut(s) | 492, 1492 |
| BsgI | GTGCAG | 3 cut(s) | 462, 2746, 3309 |
| Bsh1236I | CGCG | 1 cut(s) | 40 |
| BshFI | GGCC | 6 cut(s) | 93, 146, 1287, 2286, 2299, 2573 |
| BshNI | GGYRCC | 1 cut(s) | 279 |
| BshVI | ATCGAT | 1 cut(s) | 612 |
| BsiHKAI | GWGCWC | 3 cut(s) | 466, 1743, 2094 |
| BsiHKCI | CYCGRG | 5 cut(s) | 618, 1241, 1618, 1979, 2851 |
| BsiSI | CCGG | 3 cut(s) | 1193, 2852, 3310 |
| BslFI | GGGAC | 2 cut(s) | 2676, 3180 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1294, 2858, 3056 |
| BsmAI | GTCTC | 8 cut(s) | 128, 895, 1454, 1509, 2334, 2403, 3264, 3384 |
| BsmBI | CGTCTC | 2 cut(s) | 128, 3264 |
| BsmFI | GGGAC | 2 cut(s) | 2676, 3180 |
| BsmI | GAATGC | 2 cut(s) | 2784, 3027 |
| BsnI | GGCC | 6 cut(s) | 93, 146, 1287, 2286, 2299, 2573 |
| Bso31I | GGTCTC | 2 cut(s) | 1454, 2334 |
| BsoBI | CYCGRG | 5 cut(s) | 618, 1241, 1618, 1979, 2851 |
| Bsp119I | TTCGAA | 1 cut(s) | 1537 |
| Bsp1286I | GDGCHC | 3 cut(s) | 466, 1743, 2094 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2801 |
| BspACI | CCGC | 3 cut(s) | 1182, 2296, 3513 |
| BspANI | GGCC | 6 cut(s) | 93, 146, 1287, 2286, 2299, 2573 |
| BspCNI | CTCAG | 6 cut(s) | 192, 462, 2526, 2670, 2739, 2793 |
| BspDI | ATCGAT | 1 cut(s) | 612 |
| BspFNI | CGCG | 1 cut(s) | 40 |
| BspHI | TCATGA | 1 cut(s) | 1135 |
| BspLI | GGNNCC | 3 cut(s) | 229, 281, 1583 |
| BspMAI | CTGCAG | 2 cut(s) | 514, 1860 |
| BspMI | ACCTGC | 1 cut(s) | 216 |
| BspOI | GCTAGC | 1 cut(s) | 2210 |
| BspPI | GGATC | 6 cut(s) | 504, 890, 1222, 1669, 2451, 2628 |
| BspQI | GCTCTTC | 1 cut(s) | 1101 |
| BspT104I | TTCGAA | 1 cut(s) | 1537 |
| BspT107I | GGYRCC | 1 cut(s) | 279 |
| BspTI | CTTAAG | 1 cut(s) | 1304 |
| BspTNI | GGTCTC | 2 cut(s) | 1454, 2334 |
| BsrFI | RCCGGY | 1 cut(s) | 1192 |
| BsrI | ACTGG | 9 cut(s) | 297, 341, 388, 602, 989, 1750, 2026, 2110, 3213 |
| BssAI | RCCGGY | 1 cut(s) | 1192 |
| BssECI | CCNNGG | 7 cut(s) | 223, 1558, 2016, 2851, 2980, 2999, 3198 |
| BssNI | GRCGYC | 1 cut(s) | 1462 |
| BssT1I | CCWWGG | 1 cut(s) | 3198 |
| Bst2UI | CCWGG | 4 cut(s) | 224, 256, 1560, 2982 |
| Bst4CI | ACNGT | 9 cut(s) | 712, 1474, 1865, 2253, 2400, 2429, 3082, 3169, 3545 |
| Bst6I | CTCTTC | 4 cut(s) | 178, 1101, 2562, 3387 |
| BstACI | GRCGYC | 1 cut(s) | 1462 |
| BstAFI | CTTAAG | 1 cut(s) | 1304 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1507 |
| BstBAI | YACGTR | 2 cut(s) | 427, 1735 |
| BstBI | TTCGAA | 1 cut(s) | 1537 |
| BstC8I | GCNNGC | 6 cut(s) | 638, 1116, 1238, 1790, 2208, 2956 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3054 |
| BstFNI | CGCG | 1 cut(s) | 40 |
| BstMAI | GTCTC | 8 cut(s) | 128, 895, 1454, 1509, 2334, 2403, 3264, 3384 |
| BstNI | CCWGG | 4 cut(s) | 224, 256, 1560, 2982 |
| BstNSI | RCATGY | 3 cut(s) | 1118, 1240, 3525 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 102 |
| BstSCI | CCNGG | 7 cut(s) | 222, 254, 1558, 2850, 2851, 2980, 3309 |
| BstSFI | CTRYAG | 3 cut(s) | 510, 1071, 1856 |
| BstSNI | TACGTA | 1 cut(s) | 1735 |
| BstUI | CGCG | 1 cut(s) | 40 |
| BstV1I | GCAGC | 5 cut(s) | 463, 805, 2747, 2885, 3302 |
| BstV2I | GAAGAC | 3 cut(s) | 241, 382, 2513 |
| BstX2I | RGATCY | 7 cut(s) | 496, 1214, 1661, 1759, 2443, 2536, 2620 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2033 |
| BstYI | RGATCY | 7 cut(s) | 496, 1214, 1661, 1759, 2443, 2536, 2620 |
| Bsu15I | ATCGAT | 1 cut(s) | 612 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2657 |
| BsuI | GTATCC | 1 cut(s) | 2200 |
| BsuRI | GGCC | 6 cut(s) | 93, 146, 1287, 2286, 2299, 2573 |
| BsuTUI | ATCGAT | 1 cut(s) | 612 |
| BtgZI | GCGATG | 2 cut(s) | 1910, 3502 |
| BtrI | CACGTC | 3 cut(s) | 73, 104, 3194 |
| BtsI | GCAGTG | 4 cut(s) | 402, 507, 2217, 2763 |
| BveI | ACCTGC | 1 cut(s) | 216 |
| Cac8I | GCNNGC | 6 cut(s) | 638, 1116, 1238, 1790, 2208, 2956 |
| CciI | TCATGA | 1 cut(s) | 1135 |
| Cfr10I | RCCGGY | 1 cut(s) | 1192 |
| Cfr13I | GGNCC | 2 cut(s) | 145, 228 |
| Cfr9I | CCCGGG | 1 cut(s) | 2851 |
| ClaI | ATCGAT | 1 cut(s) | 612 |
| CseI | GACGC | 2 cut(s) | 1470, 3243 |
| Csp6I | GTAC | 7 cut(s) | 67, 446, 598, 920, 1683, 1861, 1874 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 721, 756, 3004, 3039 |
| CviQI | GTAC | 7 cut(s) | 67, 446, 598, 920, 1683, 1861, 1874 |
| DraI | TTTAAA | 3 cut(s) | 1696, 2421, 2922 |
| EaeI | YGGCCR | 2 cut(s) | 1285, 2297 |
| Eam1104I | CTCTTC | 4 cut(s) | 178, 1101, 2562, 3387 |
| EarI | CTCTTC | 4 cut(s) | 178, 1101, 2562, 3387 |
| Ecl136II | GAGCTC | 2 cut(s) | 1741, 2092 |
| Eco105I | TACGTA | 1 cut(s) | 1735 |
| Eco130I | CCWWGG | 1 cut(s) | 3198 |
| Eco24I | GRGCYC | 2 cut(s) | 1743, 2094 |
| Eco31I | GGTCTC | 2 cut(s) | 1454, 2334 |
| Eco47I | GGWCC | 1 cut(s) | 228 |
| Eco53kI | GAGCTC | 2 cut(s) | 1741, 2092 |
| Eco57I | CTGAAG | 9 cut(s) | 70, 492, 1082, 1105, 1608, 1647, 1931, 2586, 3089 |
| Eco81I | CCTNAGG | 1 cut(s) | 2657 |
| Eco88I | CYCGRG | 5 cut(s) | 618, 1241, 1618, 1979, 2851 |
| EcoICRI | GAGCTC | 2 cut(s) | 1741, 2092 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3054 |
| EcoRII | CCWGG | 4 cut(s) | 222, 254, 1558, 2980 |
| EcoT14I | CCWWGG | 1 cut(s) | 3198 |
| EcoT22I | ATGCAT | 1 cut(s) | 1503 |
| EcoT38I | GRGCYC | 2 cut(s) | 1743, 2094 |
| ErhI | CCWWGG | 1 cut(s) | 3198 |
| Esp3I | CGTCTC | 2 cut(s) | 128, 3264 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 810, 842, 888, 920, 1298, 1330 |
| FaqI | GGGAC | 2 cut(s) | 2676, 3180 |
| FauNDI | CATATG | 2 cut(s) | 680, 3388 |
| FbaI | TGATCA | 1 cut(s) | 3372 |
| FblI | GTMKAC | 1 cut(s) | 562 |
| Fnu4HI | GCNGC | 7 cut(s) | 477, 794, 2297, 2761, 2899, 3291, 3513 |
| FriOI | GRGCYC | 2 cut(s) | 1743, 2094 |
| Fsp4HI | GCNGC | 7 cut(s) | 477, 794, 2297, 2761, 2899, 3291, 3513 |
| GluI | GCNGC | 7 cut(s) | 477, 794, 2297, 2761, 2899, 3291, 3513 |
| GsaI | CCCAGC | 2 cut(s) | 496, 1496 |
| GsuI | CTGGAG | 4 cut(s) | 238, 1767, 2510, 3196 |
| HaeIII | GGCC | 6 cut(s) | 93, 146, 1287, 2286, 2299, 2573 |
| HapII | CCGG | 3 cut(s) | 1193, 2852, 3310 |
| HgaI | GACGC | 2 cut(s) | 1470, 3243 |
| Hin1I | GRCGYC | 1 cut(s) | 1462 |
| HincII | GTYRAC | 2 cut(s) | 154, 352 |
| HindII | GTYRAC | 2 cut(s) | 154, 352 |
| HindIII | AAGCTT | 3 cut(s) | 638, 1301, 1312 |
| HpaII | CCGG | 3 cut(s) | 1193, 2852, 3310 |
| HphI | GGTGA | 7 cut(s) | 106, 1006, 1931, 1944, 2015, 2324, 3325 |
| Hpy166II | GTNNAC | 7 cut(s) | 154, 352, 563, 598, 1868, 2023, 2432 |
| Hpy8I | GTNNAC | 7 cut(s) | 154, 352, 563, 598, 1868, 2023, 2432 |
| Hpy99I | CGWCG | 5 cut(s) | 74, 170, 1464, 3278, 3405 |
| HpyCH4III | ACNGT | 9 cut(s) | 712, 1474, 1865, 2253, 2400, 2429, 3082, 3169, 3545 |
| HpyCH4IV | ACGT | 7 cut(s) | 72, 103, 354, 426, 1734, 3193, 3276 |
| HpySE526I | ACGT | 7 cut(s) | 72, 103, 354, 426, 1734, 3193, 3276 |
| Hsp92I | GRCGYC | 1 cut(s) | 1462 |
| Ksp22I | TGATCA | 1 cut(s) | 3372 |
| LguI | GCTCTTC | 1 cut(s) | 1101 |
| LmnI | GCTCC | 3 cut(s) | 744, 2089, 2097 |
| Lsp1109I | GCAGC | 5 cut(s) | 463, 805, 2747, 2885, 3302 |
| LweI | GCATC | 6 cut(s) | 35, 1488, 1887, 2814, 2979, 3475 |
| MaeII | ACGT | 7 cut(s) | 72, 103, 354, 426, 1734, 3193, 3276 |
| MaeIII | GTNAC | 7 cut(s) | 104, 422, 1468, 2258, 2843, 2861, 3460 |
| MfeI | CAATTG | 1 cut(s) | 3294 |
| MflI | RGATCY | 7 cut(s) | 496, 1214, 1661, 1759, 2443, 2536, 2620 |
| MhlI | GDGCHC | 3 cut(s) | 466, 1743, 2094 |
| MlsI | TGGCCA | 1 cut(s) | 1287 |
| MluNI | TGGCCA | 1 cut(s) | 1287 |
| MlyI | GAGTC | 4 cut(s) | 1635, 2311, 2461, 2590 |
| MmeI | TCCRAC | 5 cut(s) | 228, 411, 586, 631, 3205 |
| Mox20I | TGGCCA | 1 cut(s) | 1287 |
| Mph1103I | ATGCAT | 1 cut(s) | 1503 |
| MroXI | GAANNNNTTC | 6 cut(s) | 613, 825, 1095, 1533, 1543, 1632 |
| MscI | TGGCCA | 1 cut(s) | 1287 |
| MseI | TTAA | 9 cut(s) | 357, 729, 1305, 1695, 1775, 1827, 2067, 2420, 2921 |
| Msp20I | TGGCCA | 1 cut(s) | 1287 |
| MspA1I | CMGCKG | 2 cut(s) | 2296, 2815 |
| MspCI | CTTAAG | 1 cut(s) | 1304 |
| MspI | CCGG | 3 cut(s) | 1193, 2852, 3310 |
| MspR9I | CCNGG | 7 cut(s) | 224, 256, 1560, 2852, 2853, 2982, 3311 |
| MunI | CAATTG | 1 cut(s) | 3294 |
| Mva1269I | GAATGC | 2 cut(s) | 2784, 3027 |
| MvaI | CCWGG | 4 cut(s) | 224, 256, 1560, 2982 |
| MvnI | CGCG | 1 cut(s) | 40 |
| NciI | CCSGG | 3 cut(s) | 2852, 2853, 3311 |
| NdeI | CATATG | 2 cut(s) | 680, 3388 |
| NheI | GCTAGC | 1 cut(s) | 2206 |
| NlaIV | GGNNCC | 3 cut(s) | 229, 281, 1583 |
| NmeAIII | GCCGAG | 1 cut(s) | 110 |
| NmuCI | GTSAC | 3 cut(s) | 104, 1468, 2843 |
| NsiI | ATGCAT | 1 cut(s) | 1503 |
| NspI | RCATGY | 3 cut(s) | 1118, 1240, 3525 |
| NspV | TTCGAA | 1 cut(s) | 1537 |
| PaeI | GCATGC | 2 cut(s) | 1118, 1240 |
| PaeR7I | CTCGAG | 1 cut(s) | 1979 |
| PagI | TCATGA | 1 cut(s) | 1135 |
| PciSI | GCTCTTC | 1 cut(s) | 1101 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 162 |
| PctI | GAATGC | 2 cut(s) | 2784, 3027 |
| PdmI | GAANNNNTTC | 6 cut(s) | 613, 825, 1095, 1533, 1543, 1632 |
| PfoI | TCCNGGA | 1 cut(s) | 254 |
| PkrI | GCNGC | 7 cut(s) | 478, 795, 2298, 2762, 2900, 3292, 3514 |
| PleI | GAGTC | 4 cut(s) | 1635, 2311, 2460, 2590 |
| PpsI | GAGTC | 4 cut(s) | 1635, 2311, 2460, 2590 |
| Ppu21I | YACGTR | 2 cut(s) | 427, 1735 |
| PshAI | GACNNNNGTC | 1 cut(s) | 102 |
| PsiI | TTATAA | 1 cut(s) | 3149 |
| Psp124BI | GAGCTC | 2 cut(s) | 1743, 2094 |
| Psp6I | CCWGG | 4 cut(s) | 222, 254, 1558, 2980 |
| PspFI | CCCAGC | 2 cut(s) | 492, 1492 |
| PspGI | CCWGG | 4 cut(s) | 222, 254, 1558, 2980 |
| PspN4I | GGNNCC | 3 cut(s) | 229, 281, 1583 |
| PspPI | GGNCC | 2 cut(s) | 145, 228 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 59, 91, 563, 595 |
| PstI | CTGCAG | 2 cut(s) | 514, 1860 |
| PsuI | RGATCY | 7 cut(s) | 496, 1214, 1661, 1759, 2443, 2536, 2620 |
| PvuII | CAGCTG | 1 cut(s) | 2815 |
| RsaI | GTAC | 7 cut(s) | 68, 447, 599, 921, 1684, 1862, 1875 |
| RsaNI | GTAC | 7 cut(s) | 67, 446, 598, 920, 1683, 1861, 1874 |
| SacI | GAGCTC | 2 cut(s) | 1743, 2094 |
| SapI | GCTCTTC | 1 cut(s) | 1101 |
| SaqAI | TTAA | 9 cut(s) | 357, 729, 1305, 1695, 1775, 1827, 2067, 2420, 2921 |
| SatI | GCNGC | 7 cut(s) | 477, 794, 2297, 2761, 2899, 3291, 3513 |
| Sau96I | GGNCC | 2 cut(s) | 145, 228 |
| SchI | GAGTC | 4 cut(s) | 1635, 2311, 2461, 2590 |
| ScrFI | CCNGG | 7 cut(s) | 224, 256, 1560, 2852, 2853, 2982, 3311 |
| SduI | GDGCHC | 3 cut(s) | 466, 1743, 2094 |
| SfaNI | GCATC | 6 cut(s) | 35, 1488, 1887, 2814, 2979, 3475 |
| SfcI | CTRYAG | 3 cut(s) | 510, 1071, 1856 |
| Sfr274I | CTCGAG | 1 cut(s) | 1979 |
| SfuI | TTCGAA | 1 cut(s) | 1537 |
| SinI | GGWCC | 1 cut(s) | 228 |
| SlaI | CTCGAG | 1 cut(s) | 1979 |
| SmaI | CCCGGG | 1 cut(s) | 2853 |
| SmiI | ATTTAAAT | 1 cut(s) | 2421 |
| SmlI | CTYRAG | 9 cut(s) | 79, 284, 841, 1304, 1979, 2084, 2194, 2447, 2879 |
| SmoI | CTYRAG | 9 cut(s) | 79, 284, 841, 1304, 1979, 2084, 2194, 2447, 2879 |
| SnaBI | TACGTA | 1 cut(s) | 1735 |
| SpeI | ACTAGT | 2 cut(s) | 1870, 3443 |
| SphI | GCATGC | 2 cut(s) | 1118, 1240 |
| SsiI | CCGC | 3 cut(s) | 1182, 2296, 3513 |
| SspI | AATATT | 2 cut(s) | 1407, 2270 |
| SstI | GAGCTC | 2 cut(s) | 1743, 2094 |
| StyD4I | CCNGG | 7 cut(s) | 222, 254, 1558, 2850, 2851, 2980, 3309 |
| StyI | CCWWGG | 1 cut(s) | 3198 |
| SwaI | ATTTAAAT | 1 cut(s) | 2421 |
| TaaI | ACNGT | 9 cut(s) | 712, 1474, 1865, 2253, 2400, 2429, 3082, 3169, 3545 |
| TaiI | ACGT | 7 cut(s) | 75, 106, 357, 429, 1737, 3196, 3279 |
| TaqI | TCGA | 8 cut(s) | 165, 272, 612, 907, 1513, 1537, 1980, 3304 |
| TatI | WGTACW | 3 cut(s) | 1682, 1860, 1873 |
| TauI | GCSGC | 2 cut(s) | 2299, 3515 |
| Tru1I | TTAA | 9 cut(s) | 357, 729, 1305, 1695, 1775, 1827, 2067, 2420, 2921 |
| Tru9I | TTAA | 9 cut(s) | 357, 729, 1305, 1695, 1775, 1827, 2067, 2420, 2921 |
| TseFI | GTSAC | 3 cut(s) | 104, 1468, 2843 |
| TseI | GCWGC | 5 cut(s) | 476, 793, 2760, 2898, 3290 |
| Tsp45I | GTSAC | 3 cut(s) | 104, 1468, 2843 |
| TspGWI | ACGGA | 1 cut(s) | 2798 |
| TspMI | CCCGGG | 1 cut(s) | 2851 |
| Vha464I | CTTAAG | 1 cut(s) | 1304 |
| VpaK11BI | GGWCC | 1 cut(s) | 228 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3054 |
| XapI | RAATTY | 7 cut(s) | 734, 1206, 1290, 1543, 1632, 2153, 2476 |
| XceI | RCATGY | 3 cut(s) | 1118, 1240, 3525 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 986 |
| XhoI | CTCGAG | 1 cut(s) | 1979 |
| XmaI | CCCGGG | 1 cut(s) | 2851 |
| XmiI | GTMKAC | 1 cut(s) | 562 |
| XmnI | GAANNNNTTC | 6 cut(s) | 613, 825, 1095, 1533, 1543, 1632 |
| Zsp2I | ATGCAT | 1 cut(s) | 1503 |