RchiOBHm_Chr7g0234991

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
59665010 .. 59668301
3292 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21060

Sequence Viewer

Length: 2466 bp
ATGAAGTCAACGGAGCCATCATCGTCATCATTCCAGCCGGGGCATTCATCGTCATCATCACCACTGGAGCCACCGTCCTCCCTGTACTGGGACACATATTGGATAACCTACGACGTGTTCTTGAGCTTCAGAGGTGAAGACACACGCAGGACCTTCACGGACCACCTCTACGCTGCACTAATTCGTGCGGGAGTCAGCACGTTTTGGGATGCCGAGGGACTAAGAAGAGGGAAAAAAATATCAAAGGAATTGGGGCGGATAATCCAGGAGTGTAGGATCTCTCTAATTGTCTTCTCAGAGAAGTACGCGGATTCAAGTTGGTGTCTTGAGGAGCTGGTGCACATCATGGAGTGTAGAAAAACACGGGGGCAGTTGGTCTTCCCAATATTCTATCATGTTGATCCTTCTCATGTCCGAAACCAGGCCGGTAGTTTTGGTAAGGCATTTGAGAAACATGAGTTGAGAACTCCAATTATAGAAGCAGCAATTATGGGACAAAGGGTTACTTTAGAATTATCTAGTGATGTACAAAAGAAATATGAAGCTATAGCTAGACGTCATCATGGAGAAAAGATAGCCAAGTGGAGAGCTGCTCTTAAAGGAGCTGCAAATTTGGCCGGCTTCGATATCGCTGATAGGCCTGAAGCAGAGTTTATCAGTAGCATTGTTGACGAGATATGCAGACAGCTGACCACCCCATACTTGAATTTAGCTGTCTACCCAGTTGGAATTGATTCTCGTGTTGAAGATATTAGTAAATGCTTAGGTGTTGGATTAGATAATGATGTTCGCATGGTTGGAATTTGGGGTATGGGTGGAATTGGGAAAACAACAGTTGCCAAAGCCATCTATAACAAATTTTATCATAATTTTGACAGTAAAAGTTTCCTAGCAGATGTTAGGGAAACTGCAAAGGACTCAAATGGTAAGATTGCTCTGCAAGAAAGACTTCTTTCTGATGTCTTAAAACCAACCAAGATAGTGGTAGGTGATGTTTCTAGAGGGATCAATGTGATAAGAGAACGACTTGGAAGGAAAAAGGTACTTTTCATTGTTGATGATGTAGATCATGAGGACCAATTGAATGCATTGGCTATAAGGCGTGATTCCTTTGGTCCGGGAAGTAGAATTATTATAACAACAAGAGATCGACATTTGCTAGAACTACTGAAAGTGGACACAATACATCTGACCCAAGAAATGAATGAAGAAGAAGCTATTGAACTCTTCAGTTGGCATGCCTTTCAAAATCATTCTCCTAATGAAGATTATATCGAACTCTCAAGAAGAGTGGTTACTTACTGTGGAGGTTTACCACTTGCTCTTGAAATTTTAGGGTCTTTCCTCTTTGGAAGGAGCATAGAAGATTGGATTAGCACACTGAAGAAATTGAAAAAAATTCCTGATGTCAGAATTCAGTCAAGGCTCAGAATAAGCTTTGATGCAATTGATGAGAGCCAGAGGAACATATTCCTCCATATATGTTGTTACTTCATCGGAATGGACAAGAACTATGTCATAAAAATACTGAAGGGATGTGGTTTTTCTCCAGAAATAGAAATCAGTGTCCTGCTCCAACGTTGCCTTGTAACTGTTAGTGAGAAAAACAAGCTCATGATGCATGATTTGCTTCGAGACATGGGCAGAGAAGTTGTTCGTGAAGAATCCCCAAACCGCCCTGAAAGACGTAGTAGATTGTGGCGTAAGGAAGATGTAATAGATGTGTTGACAGATGAATCTGGAACTGAAGAGACTGAAGGACTTGCTATAAATTTGCAAAGATCTGACAACATGACTTTCAGTACAGAATCATTTAGAAACATGAAGAGACTGAAATTGCTCCAACTCAACCATGTACAACTCACTGGAGACTGCGACAAGTTTCCCAAAAAGTTAAGGTGGCTCTGCTTGCGAGGATTCTCTCTACAGTTCATTCGAAATGAGCTTCTTAATGAGACATACCTGGTTTCTATCGACCTGCGGTACAGCAATCTTGTACGAGTTTGGGAGTATTCCTGGCGGCTTGGGAAATTGGAGATACTTAATCTCAGTCATTCACATTACCTAAAACAATCACCAGACTTTTCACACCTCCCAAAGCTACAGTATTTGATCCTTAAAGACTGTGTGAGTTTGCCAGAGATTCACTGGTCGGTTGGACTTCTTCGGAGACTTGCCTTGCTAAATCTTAAAGGCTGCACAATGCTCAAGGACCTTCCGGAGGACTTTTATAAGTTGATTCATGTTGAGACTCTTGTTCTTTCTGGCTGTTCGAGATTTGAGAATTTGAGCAAGAATATAGGAAATATGATCTCTTTGAAAACTCTTATTATAAGTGGCACAGCCATAAGTGAAGTACCATCCTCTGTAGATAACATGAGGAGACTGGACTTTTCATCTCGACAAGGCCTGAGTGGCCTAAAACGATGTTTCCAGGATGAGACATCAGGACCAATCCGAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

821

Amino Acids

94.01

Weight (kDa)

8.51

Isoelectric Point (pI)

52.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 37 - 154 9.3e-43 TIR domain
TIR_2 PF13676 39 - 135 2.2e-14 TIR domain
NB-ARC PF00931 260 - 418 1.2e-20 NB-ARC domain
WHD_ROQ1 PF23282 485 - 556 1.5e-18 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36930 AT5G36930 AT5G36930 AT5G36930
fragaria_vesca FvH4_3g45361 FvH4_3g45380 FvH4_5g21061 FvH4_5g21062 FvH4_5g21063 FvH4_5g32050 FvH4_5g32970 FvH4_5g32990 FvH4_5g34190 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34211 FvH4_5g34240 FvH4_5g34250
malus_domestica MD00G1011700.v1.1 MD00G1026100.v1.1 MD00G1026500.v1.1 MD00G1027000.v1.1 MD00G1027100.v1.1 MD00G1027700.v1.1 MD00G1027800.v1.1 MD00G1028000.v1.1 MD00G1220000.v1.1 MD02G1024400.v1.1 MD02G1024800.v1.1 MD02G1026000.v1.1 MD02G1026100.v1.1 MD02G1031800.v1.1 MD02G1038500.v1.1 MD02G1038700.v1.1 MD02G1039200.v1.1 MD02G1040600.v1.1 MD02G1040900.v1.1 MD02G1041200.v1.1 MD02G1041300.v1.1 MD02G1041700.v1.1 MD02G1042000.v1.1 MD02G1043800.v1.1 MD02G1043900.v1.1 MD02G1044300.v1.1 MD02G1045200.v1.1 MD02G1045300.v1.1 MD02G1051200.v1.1 MD02G1052200.v1.1 MD02G1052800.v1.1 MD02G1053100.v1.1 MD02G1053600.v1.1 MD02G1055500.v1.1 MD02G1063300.v1.1 MD02G1063400.v1.1 MD02G1063800.v1.1 MD02G1306500.v1.1 MD02G1306600.v1.1 MD02G1306700.v1.1 MD02G1306900.v1.1 MD02G1307200.v1.1 MD04G1011700.v1.1 MD05G1315400.v1.1 MD05G1316000.v1.1 MD05G1316700.v1.1 MD05G1317000.v1.1 MD05G1317300.v1.1 MD05G1317600.v1.1 MD05G1317700.v1.1 MD07G1102800.v1.1 MD07G1238200.v1.1 MD08G1175900.v1.1 MD08G1203600.v1.1 MD09G1024200.v1.1 MD09G1039600.v1.1 MD09G1044800.v1.1 MD09G1045100.v1.1 MD10G1038700.v1.1 MD10G1039000.v1.1 MD10G1039200.v1.1 MD10G1040000.v1.1 MD10G1040200.v1.1 MD10G1040600.v1.1 MD10G1040800.v1.1 MD10G1297300.v1.1 MD12G1247500.v1.1 MD12G1247900.v1.1 MD12G1248300.v1.1 MD12G1248800.v1.1 MD15G1103700.v1.1 MD15G1103800.v1.1 MD15G1104000.v1.1 MD15G1179600.v1.1 MD15G1182500.v1.1 MD16G1068200.v1.1 MD16G1068300.v1.1 MD17G1024600.v1.1 MD17G1024700.v1.1 MD17G1025000.v1.1 MD17G1025900.v1.1
prunus_persica Prupe.1G539800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G557100_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557300_v2.0.a1
pyrus_communis pycom02g02080 pycom02g02090 pycom02g02110 pycom02g03220 pycom02g03260 pycom02g03370 pycom02g03390 pycom02g03410 pycom02g03420 pycom02g03450 pycom02g03500 pycom02g03730 pycom02g03770 pycom02g04400 pycom02g04410 pycom02g04430 pycom02g04450 pycom02g04460 pycom02g04490 pycom02g05200 pycom02g25710 pycom02g25750 pycom02g25790 pycom02g25810 pycom02g25830 pycom04g00920 pycom04g00930 pycom04g00940 pycom05g29300 pycom05g29310 pycom05g29380 pycom05g29410 pycom07g06310 pycom07g21420 pycom08g15070 pycom08g17540 pycom08g17560 pycom08g17570 pycom10g02670 pycom10g02680 pycom10g02700 pycom10g02770 pycom10g02790 pycom10g02800 pycom10g02810 pycom10g25020 pycom10g25030 pycom10g25050 pycom10g25080 pycom111g01990 pycom111g02000 pycom111g02030 pycom111g02040 pycom111g02050 pycom111g02060 pycom12g22710 pycom12g22720 pycom12g22730 pycom12g22740 pycom12g22750 pycom12g22770 pycom12g22780 pycom12g22790 pycom12g22800 pycom12g22810 pycom12g22830 pycom12g22840 pycom12g22860 pycom15g09440 pycom15g09480 pycom15g16120 pycom15g32380 pycom16g05970 pycom17g02100
rosa_chinensis RchiOBHm_Chr2g0144661 RchiOBHm_Chr4g0407491 RchiOBHm_Chr4g0407501 RchiOBHm_Chr4g0412381 RchiOBHm_Chr7g0208191 RchiOBHm_Chr7g0208201 RchiOBHm_Chr7g0208211 RchiOBHm_Chr7g0208221 RchiOBHm_Chr7g0228071 RchiOBHm_Chr7g0228121 RchiOBHm_Chr7g0230971 RchiOBHm_Chr7g0230981 RchiOBHm_Chr7g0233901 RchiOBHm_Chr7g0233951 RchiOBHm_Chr7g0233961 RchiOBHm_Chr7g0233991 RchiOBHm_Chr7g0234021 RchiOBHm_Chr7g0234151 RchiOBHm_Chr7g0234161 RchiOBHm_Chr7g0234241 RchiOBHm_Chr7g0234501 RchiOBHm_Chr7g0234641 RchiOBHm_Chr7g0234771 RchiOBHm_Chr7g0234781 RchiOBHm_Chr7g0234991 RchiOBHm_Chr7g0241291 RchiOBHm_Chr7g0241301
rosa_laevigata RLG00000001186 RLG00000001187 RLG00000001212 RLG00000001226 RLG00000001233 RLG00000001590 RLG00000003242 RLG00000003243 RLG00000003249 RLG00000008688 RLG00000008690
rosa_multiflora Rmu_co7966574.1_g000001 Rmu_co8120830.1_g000001 Rmu_co8142226.1_g000001 Rmu_co8293083.1_g000001 Rmu_co8351227.1_g000001 Rmu_co8380159.1_g000001 Rmu_co8456505.1_g000001 Rmu_sc0000676.1_g000025 Rmu_sc0000706.1_g000018 Rmu_sc0000706.1_g000040 Rmu_sc0000740.1_g000029 Rmu_sc0000740.1_g000032 Rmu_sc0000740.1_g000037 Rmu_sc0000740.1_g000040 Rmu_sc0000762.1_g000003 Rmu_sc0000762.1_g000019 Rmu_sc0000762.1_g000034 Rmu_sc0000762.1_g000069 Rmu_sc0000892.1_g000001 Rmu_sc0000945.1_g000040 Rmu_sc0001913.1_g000037 Rmu_sc0001913.1_g000041 Rmu_sc0001913.1_g000049 Rmu_sc0002775.1_g000017 Rmu_sc0002775.1_g000018 Rmu_sc0002775.1_g000020 Rmu_sc0002775.1_g000021 Rmu_sc0002775.1_g000022 Rmu_sc0002775.1_g000025 Rmu_sc0002775.1_g000026 Rmu_sc0002775.1_g000028 Rmu_sc0002775.1_g000030 Rmu_sc0004858.1_g000002 Rmu_sc0004864.1_g000022 Rmu_sc0005038.1_g000023 Rmu_sc0005840.1_g000014 Rmu_sc0006724.1_g000003 Rmu_sc0006824.1_g000005 Rmu_sc0007869.1_g000003 Rmu_sc0007869.1_g000005 Rmu_sc0007869.1_g000008 Rmu_sc0008646.1_g000007 Rmu_sc0009637.1_g000009 Rmu_sc0010500.1_g000002 Rmu_sc0010500.1_g000012 Rmu_sc0012403.1_g000025 Rmu_sc0013768.1_g000025 Rmu_sc0015625.1_g000001 Rmu_sc0019715.1_g000001 Rmu_sc0021133.1_g000002 Rmu_sc0021904.1_g000001 Rmu_sc0021904.1_g000003 Rmu_sc0021904.1_g000004 Rmu_sc0022054.1_g000001 Rmu_sc0026025.1_g000001 Rmu_sc0036828.1_g000002 Rmu_sc0041808.1_g000001 Rmu_ssc0000012.1_g000001
rosa_roxburghii Rroxscaffold_3G00226370 Rroxscaffold_3G00226860 Rroxscaffold_3G00226900 Rroxscaffold_3G00226930 Rroxscaffold_3G00226940 Rroxscaffold_3G00226970 Rroxscaffold_3G00226980 Rroxscaffold_3G00231530 Rroxscaffold_3G00237090 Rroxscaffold_3G00250760 Rroxscaffold_3G00250800
rosa_rugosa Rorug04G0082300 Rorug07G0101800 Rorug07G0102000 Rorug07G0102100 Rorug07G0221200 Rorug07G0245700 Rorug07G0245700 Rorug07G0245700 Rorug07G0263900 Rorug07G0264000 Rorug07G0264000 Rorug07G0264500 Rorug07G0282900 Rorug07G0282900 Rorug07G0283100 Rorug07G0283200.1 Rorug07G0283300 Rorug07G0283900 Rorug07G0284000 Rorug07G0284100 Rorug07G0284300 Rorug07G0284400 Rorug07G0284500 Rorug07G0285000 Rorug07G0285200 Rorug07G0285300 Rorug07G0285500 Rorug07G0286800 Rorug07G0286900 Rorug07G0287100 Rorug07G0287200
rosa_samantha Rh7AG236100 Rh7AG236200 Rh7AG236300 Rh7AG440000 Rh7AG440100 Rh7BG411900 Rh7BG412000 Rh7BG412600 Rh7CG251300 Rh7CG417700 Rh7CG460100 Rh7DG242100 Rh7DG242200 Rh7DG242300 Rh7DG429300
rosa_wichuraiana Rw0G005070 Rw0G010780 Rw0G012530 Rw7G020110 Rw7G020160 Rw7G020170 Rw7G033210 Rw7G033230 Rw7G033250 Rw7G034540 Rw7G035150 Rw7G036190 Rw7G036210 Rw7G036260 Rw7G036270 Rw7G036290 Rw7G036300 Rw7G036310 Rw7G036350 Rw7G036360 Rw7G036440 Rw7G036510 Rw7G036530 Rw7G036570 Rw7G036590 Rw7G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1136, 2232, 2333
AatII GACGTC 1 cut(s) 559
Acc36I ACCTGC 1 cut(s) 1986
AccI GTMKAC 1 cut(s) 717
AccII CGCG 1 cut(s) 308
AccIII TCCGGA 1 cut(s) 2218
AciI CCGC 6 cut(s) 188, 256, 308, 1675, 1981, 2020
AclI AACGTT 1 cut(s) 1579
AclWI GGATC 4 cut(s) 284, 395, 1013, 2107
AcoI YGGCCR 1 cut(s) 615
AcsI RAATTY 9 cut(s) 610, 706, 801, 857, 1329, 1398, 1413, 1771, 2284
AcuI CTGAAG 7 cut(s) 112, 663, 1213, 1403, 1550, 1767, 1776
AcyI GRCGYC 1 cut(s) 556
AfaI GTAC 9 cut(s) 86, 305, 528, 1044, 1804, 1857, 1985, 1998, 2358
AfiI CCNNNNNNNGG 5 cut(s) 87, 88, 421, 2221, 2459
AflIII ACRYGT 1 cut(s) 114
AgsI TTSAA 9 cut(s) 315, 706, 746, 1084, 1223, 1247, 1328, 1393, 2320
AjiI CACGTC 1 cut(s) 115
AjnI CCWGG 5 cut(s) 264, 420, 1962, 2015, 2433
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 9 cut(s) 1629, 1745, 1822, 1863, 1949, 2164, 2243, 2377, 2435
Alw44I GTGCAC 1 cut(s) 338
AlwI GGATC 4 cut(s) 284, 395, 1013, 2107
Aor13HI TCCGGA 1 cut(s) 2218
AoxI GGCC 5 cut(s) 423, 615, 638, 2407, 2416
ApaLI GTGCAC 1 cut(s) 338
ApeKI GCWGC 5 cut(s) 173, 482, 590, 605, 2196
ApoI RAATTY 9 cut(s) 610, 706, 801, 857, 1329, 1398, 1413, 1771, 2284
Asp700I GAANNNNTTC 4 cut(s) 733, 948, 1469, 1653
AspS9I GGNCC 6 cut(s) 150, 160, 1075, 1115, 2212, 2450
AsuC2I CCSGG 2 cut(s) 39, 1119
AsuHPI GGTGA 4 cut(s) 51, 146, 1001, 2067
AsuII TTCGAA 1 cut(s) 1936
AvaII GGWCC 6 cut(s) 150, 160, 1075, 1115, 2212, 2450
BaeGI GKGCMC 1 cut(s) 342
BarI GAAGNNNNNNTAC 2 cut(s) 1279, 1311
BauI CACGAG 1 cut(s) 738
BbsI GAAGAC 3 cut(s) 144, 283, 370
Bbv12I GWGCWC 1 cut(s) 342
BbvI GCAGC 5 cut(s) 160, 494, 577, 592, 2183
BccI CCATC 3 cut(s) 25, 854, 2368
BciT130I CCWGG 5 cut(s) 266, 422, 1964, 2017, 2435
BcnI CCSGG 2 cut(s) 39, 1119
BcoDI GTCTC 9 cut(s) 1629, 1745, 1822, 1863, 1949, 2164, 2243, 2377, 2435
BfaI CTAG 5 cut(s) 519, 552, 890, 999, 1160
BfmI CTRYAG 4 cut(s) 546, 1925, 2102, 2367
BfuAI ACCTGC 1 cut(s) 1986
BglI GCCNNNNNGGC 1 cut(s) 2415
BglII AGATCT 1 cut(s) 1781
BisI GCNGC 6 cut(s) 174, 483, 591, 606, 2021, 2197
BlsI GCNGC 6 cut(s) 175, 484, 592, 607, 2022, 2198
Bme1390I CCNGG 7 cut(s) 39, 266, 422, 1119, 1964, 2017, 2435
Bme18I GGWCC 6 cut(s) 150, 160, 1075, 1115, 2212, 2450
BmgBI CACGTC 1 cut(s) 115
BmgT120I GGNCC 6 cut(s) 150, 160, 1075, 1115, 2212, 2450
BmiI GGNNCC 2 cut(s) 15, 69
BmrFI CCNGG 7 cut(s) 39, 266, 422, 1119, 1964, 2017, 2435
BmrI ACTGGG 2 cut(s) 97, 716
BmsI GCATC 3 cut(s) 199, 1432, 1608
BmuI ACTGGG 2 cut(s) 97, 716
BpiI GAAGAC 3 cut(s) 144, 283, 370
BplI GAGNNNNNCTC 2 cut(s) 577, 609
BpmI CTGGAG 3 cut(s) 86, 1533, 1887
Bpu10I CCTNAGC 1 cut(s) 763
Bpu14I TTCGAA 1 cut(s) 1936
BpuEI CTTGAG 4 cut(s) 142, 347, 1267, 2192
BpuMI CCSGG 2 cut(s) 39, 1119
BsaBI GATNNNNATC 1 cut(s) 1065
BsaHI GRCGYC 1 cut(s) 556
BsaJI CCNNGG 3 cut(s) 38, 213, 2458
BsaWI WCCGGW 1 cut(s) 2218
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 5 cut(s) 87, 88, 421, 2221, 2459
Bse118I RCCGGY 2 cut(s) 425, 617
Bse1I ACTGG 6 cut(s) 69, 92, 722, 1870, 2153, 2391
Bse8I GATNNNNATC 1 cut(s) 1065
BseAI TCCGGA 1 cut(s) 2218
BseBI CCWGG 5 cut(s) 266, 422, 1964, 2017, 2435
BseDI CCNNGG 3 cut(s) 38, 213, 2458
BseGI GGATG 4 cut(s) 214, 1541, 2360, 2443
BseJI GATNNNNATC 1 cut(s) 1065
BseLI CCNNNNNNNGG 5 cut(s) 87, 88, 421, 2221, 2459
BseMII CTCAG 4 cut(s) 309, 1441, 2062, 2402
BseNI ACTGG 6 cut(s) 69, 92, 722, 1870, 2153, 2391
BseRI GAGGAG 2 cut(s) 344, 2395
BseSI GKGCMC 1 cut(s) 342
BseXI GCAGC 5 cut(s) 160, 494, 577, 592, 2183
BsgI GTGCAG 2 cut(s) 159, 2182
Bsh1236I CGCG 1 cut(s) 308
BshFI GGCC 5 cut(s) 425, 617, 640, 2409, 2418
BsiHKAI GWGCWC 1 cut(s) 342
BsiSI CCGG 5 cut(s) 38, 426, 618, 1118, 2219
BslFI GGGAC 3 cut(s) 104, 231, 507
BslI CCNNNNNNNGG 5 cut(s) 87, 88, 421, 2221, 2459
BsmAI GTCTC 9 cut(s) 1629, 1745, 1822, 1863, 1949, 2164, 2243, 2377, 2435
BsmFI GGGAC 3 cut(s) 104, 231, 507
BsmI GAATGC 2 cut(s) 43, 1090
BsnI GGCC 5 cut(s) 425, 617, 640, 2409, 2418
Bsp119I TTCGAA 1 cut(s) 1936
Bsp1286I GDGCHC 1 cut(s) 342
Bsp13I TCCGGA 1 cut(s) 2218
Bsp1407I TGTACA 2 cut(s) 526, 1855
Bsp143I GATC 8 cut(s) 276, 400, 1005, 1066, 1147, 1781, 2112, 2310
BspACI CCGC 6 cut(s) 188, 256, 308, 1675, 1981, 2020
BspANI GGCC 5 cut(s) 425, 617, 640, 2409, 2418
BspCNI CTCAG 4 cut(s) 308, 1440, 2061, 2403
BspEI TCCGGA 1 cut(s) 2218
BspFNI CGCG 1 cut(s) 308
BspHI TCATGA 2 cut(s) 1069, 1614
BspLI GGNNCC 2 cut(s) 15, 69
BspMI ACCTGC 1 cut(s) 1986
BspPI GGATC 4 cut(s) 284, 395, 1013, 2107
BspT104I TTCGAA 1 cut(s) 1936
BsrFI RCCGGY 2 cut(s) 425, 617
BsrGI TGTACA 2 cut(s) 526, 1855
BsrI ACTGG 6 cut(s) 69, 92, 722, 1870, 2153, 2391
BssAI RCCGGY 2 cut(s) 425, 617
BssECI CCNNGG 3 cut(s) 38, 213, 2458
BssMI GATC 8 cut(s) 276, 400, 1005, 1066, 1147, 1781, 2112, 2310
BssNI GRCGYC 1 cut(s) 556
BssSI CACGAG 1 cut(s) 738
Bst2BI CACGAG 1 cut(s) 738
Bst2UI CCWGG 5 cut(s) 266, 422, 1964, 2017, 2435
Bst4CI ACNGT 8 cut(s) 75, 835, 878, 1304, 1594, 1929, 2106, 2126
Bst6I CTCTTC 5 cut(s) 220, 1232, 1282, 1743, 1820
BstACI GRCGYC 1 cut(s) 556
BstAPI GCANNNNNTGC 1 cut(s) 1627
BstAUI TGTACA 2 cut(s) 526, 1855
BstBI TTCGAA 1 cut(s) 1936
BstC8I GCNNGC 3 cut(s) 619, 1239, 1910
BstDEI CTNAG 6 cut(s) 221, 295, 763, 1427, 2048, 2411
BstENI CCTNNNNNAGG 1 cut(s) 2219
BstF5I GGATG 4 cut(s) 214, 1541, 2360, 2443
BstFNI CGCG 1 cut(s) 308
BstKTI GATC 8 cut(s) 279, 403, 1008, 1069, 1150, 1784, 2115, 2313
BstMAI GTCTC 9 cut(s) 1629, 1745, 1822, 1863, 1949, 2164, 2243, 2377, 2435
BstMBI GATC 8 cut(s) 276, 400, 1005, 1066, 1147, 1781, 2112, 2310
BstMWI GCNNNNNNNGC 5 cut(s) 614, 1618, 1627, 1909, 2415
BstNI CCWGG 5 cut(s) 266, 422, 1964, 2017, 2435
BstNSI RCATGY 1 cut(s) 1241
BstSCI CCNGG 7 cut(s) 37, 264, 420, 1117, 1962, 2015, 2433
BstSFI CTRYAG 4 cut(s) 546, 1925, 2102, 2367
BstSLI GKGCMC 1 cut(s) 342
BstUI CGCG 1 cut(s) 308
BstV1I GCAGC 5 cut(s) 160, 494, 577, 592, 2183
BstV2I GAAGAC 3 cut(s) 144, 283, 370
BstX2I RGATCY 2 cut(s) 276, 1781
BstXI CCANNNNNNTGG 1 cut(s) 982
BstYI RGATCY 2 cut(s) 276, 1781
BsuRI GGCC 5 cut(s) 425, 617, 640, 2409, 2418
BtrI CACGTC 1 cut(s) 115
BtsCI GGATG 4 cut(s) 214, 1541, 2360, 2443
BtsIMutI CAGTG 5 cut(s) 62, 1379, 1570, 1863, 2146
BveI ACCTGC 1 cut(s) 1986
Cac8I GCNNGC 3 cut(s) 619, 1239, 1910
CciI TCATGA 2 cut(s) 1069, 1614
Cfr10I RCCGGY 2 cut(s) 425, 617
Cfr13I GGNCC 6 cut(s) 150, 160, 1075, 1115, 2212, 2450
CsiI ACCWGGT 1 cut(s) 1962
Csp6I GTAC 9 cut(s) 85, 304, 527, 1043, 1803, 1856, 1984, 1997, 2357
CspCI CAANNNNNGTGG 2 cut(s) 1272, 1307
CviQI GTAC 9 cut(s) 85, 304, 527, 1043, 1803, 1856, 1984, 1997, 2357
DdeI CTNAG 6 cut(s) 221, 295, 763, 1427, 2048, 2411
DpnI GATC 8 cut(s) 278, 402, 1007, 1068, 1149, 1783, 2114, 2312
DpnII GATC 8 cut(s) 276, 400, 1005, 1066, 1147, 1781, 2112, 2310
EaeI YGGCCR 1 cut(s) 615
Eam1104I CTCTTC 5 cut(s) 220, 1232, 1282, 1743, 1820
EarI CTCTTC 5 cut(s) 220, 1232, 1282, 1743, 1820
EciI GGCGGA 1 cut(s) 271
Eco147I AGGCCT 2 cut(s) 640, 2409
Eco32I GATATC 1 cut(s) 628
Eco47I GGWCC 6 cut(s) 150, 160, 1075, 1115, 2212, 2450
Eco57I CTGAAG 7 cut(s) 112, 663, 1213, 1403, 1550, 1767, 1776
EcoNI CCTNNNNNAGG 1 cut(s) 2219
EcoO109I RGGNCCY 2 cut(s) 150, 2212
EcoRI GAATTC 1 cut(s) 1413
EcoRII CCWGG 5 cut(s) 264, 420, 1962, 2015, 2433
EcoRV GATATC 1 cut(s) 628
EcoT22I ATGCAT 2 cut(s) 1090, 1623
FalI AAGNNNNNCTT 4 cut(s) 490, 522, 933, 965
FaqI GGGAC 3 cut(s) 104, 231, 507
FauI CCCGC 1 cut(s) 181
FblI GTMKAC 1 cut(s) 717
Fnu4HI GCNGC 6 cut(s) 174, 483, 591, 606, 2021, 2197
FokI GGATG 4 cut(s) 221, 1548, 2347, 2450
Fsp4HI GCNGC 6 cut(s) 174, 483, 591, 606, 2021, 2197
FspBI CTAG 5 cut(s) 519, 552, 890, 999, 1160
GluI GCNGC 6 cut(s) 174, 483, 591, 606, 2021, 2197
GsuI CTGGAG 3 cut(s) 86, 1533, 1887
HaeIII GGCC 5 cut(s) 425, 617, 640, 2409, 2418
HapII CCGG 5 cut(s) 38, 426, 618, 1118, 2219
Hin1I GRCGYC 1 cut(s) 556
HincII GTYRAC 3 cut(s) 9, 670, 1728
HindII GTYRAC 3 cut(s) 9, 670, 1728
HindIII AAGCTT 1 cut(s) 1435
HpaII CCGG 5 cut(s) 38, 426, 618, 1118, 2219
HphI GGTGA 4 cut(s) 51, 146, 1001, 2067
Hpy166II GTNNAC 7 cut(s) 9, 340, 670, 718, 1177, 1313, 1728
Hpy8I GTNNAC 7 cut(s) 9, 340, 670, 718, 1177, 1313, 1728
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 7 cut(s) 163, 414, 1026, 1347, 1525, 1751, 2225
HpyCH4III ACNGT 8 cut(s) 75, 835, 878, 1304, 1594, 1929, 2106, 2126
HpyCH4IV ACGT 5 cut(s) 114, 200, 556, 1579, 1687
HpyF10VI GCNNNNNNNGC 5 cut(s) 614, 1618, 1627, 1909, 2415
HpyF3I CTNAG 6 cut(s) 221, 295, 763, 1427, 2048, 2411
HpySE526I ACGT 5 cut(s) 114, 200, 556, 1579, 1687
Hsp92I GRCGYC 1 cut(s) 556
Kpn2I TCCGGA 1 cut(s) 2218
KroI GCCGGC 1 cut(s) 617
KroNI GCCGGC 1 cut(s) 619
Kzo9I GATC 8 cut(s) 276, 400, 1005, 1066, 1147, 1781, 2112, 2310
LmnI GCTCC 7 cut(s) 13, 67, 331, 602, 1356, 1578, 1845
Lsp1109I GCAGC 5 cut(s) 160, 494, 577, 592, 2183
LweI GCATC 3 cut(s) 199, 1432, 1608
MabI ACCWGGT 1 cut(s) 1962
MaeI CTAG 5 cut(s) 519, 552, 890, 999, 1160
MaeII ACGT 5 cut(s) 114, 200, 556, 1579, 1687
MaeIII GTNAC 4 cut(s) 502, 1294, 1487, 1588
MalI GATC 8 cut(s) 278, 402, 1007, 1068, 1149, 1783, 2114, 2312
MboI GATC 8 cut(s) 276, 400, 1005, 1066, 1147, 1781, 2112, 2310
MfeI CAATTG 2 cut(s) 1079, 1446
MflI RGATCY 2 cut(s) 276, 1781
MhlI GDGCHC 1 cut(s) 342
MlyI GAGTC 3 cut(s) 201, 911, 2245
MmeI TCCRAC 6 cut(s) 706, 751, 778, 1600, 1867, 2137
Mph1103I ATGCAT 2 cut(s) 1090, 1623
MroI TCCGGA 1 cut(s) 2218
MroNI GCCGGC 1 cut(s) 617
MroXI GAANNNNTTC 4 cut(s) 733, 948, 1469, 1653
MseI TTAA 7 cut(s) 597, 965, 1895, 1950, 2043, 2118, 2190
MslI CAYNNNNRTG 1 cut(s) 1499
MspA1I CMGCKG 1 cut(s) 688
MspI CCGG 5 cut(s) 38, 426, 618, 1118, 2219
MspR9I CCNGG 7 cut(s) 39, 266, 422, 1119, 1964, 2017, 2435
MunI CAATTG 2 cut(s) 1079, 1446
Mva1269I GAATGC 2 cut(s) 43, 1090
MvaI CCWGG 5 cut(s) 266, 422, 1964, 2017, 2435
MvnI CGCG 1 cut(s) 308
MwoI GCNNNNNNNGC 5 cut(s) 614, 1618, 1627, 1909, 2415
NaeI GCCGGC 1 cut(s) 619
NciI CCSGG 2 cut(s) 39, 1119
NdeII GATC 8 cut(s) 276, 400, 1005, 1066, 1147, 1781, 2112, 2310
NgoMIV GCCGGC 1 cut(s) 617
NlaIV GGNNCC 2 cut(s) 15, 69
NmeAIII GCCGAG 1 cut(s) 238
NsiI ATGCAT 2 cut(s) 1090, 1623
NspI RCATGY 1 cut(s) 1241
NspV TTCGAA 1 cut(s) 1936
PaeI GCATGC 1 cut(s) 1241
PagI TCATGA 2 cut(s) 1069, 1614
PceI AGGCCT 2 cut(s) 640, 2409
PctI GAATGC 2 cut(s) 43, 1090
PdiI GCCGGC 1 cut(s) 619
PdmI GAANNNNTTC 4 cut(s) 733, 948, 1469, 1653
PfeI GAWTC 9 cut(s) 311, 734, 1106, 1664, 1736, 1808, 1917, 2143, 2239
PfoI TCCNGGA 3 cut(s) 264, 1117, 2433
PkrI GCNGC 6 cut(s) 175, 484, 592, 607, 2022, 2198
PleI GAGTC 3 cut(s) 200, 911, 2245
PpsI GAGTC 3 cut(s) 200, 911, 2245
PpuMI RGGWCCY 2 cut(s) 150, 2212
PsiI TTATAA 3 cut(s) 1136, 2232, 2333
Psp1406I AACGTT 1 cut(s) 1579
Psp5II RGGWCCY 2 cut(s) 150, 2212
Psp6I CCWGG 5 cut(s) 264, 420, 1962, 2015, 2433
PspGI CCWGG 5 cut(s) 264, 420, 1962, 2015, 2433
PspN4I GGNNCC 2 cut(s) 15, 69
PspPI GGNCC 6 cut(s) 150, 160, 1075, 1115, 2212, 2450
PspPPI RGGWCCY 2 cut(s) 150, 2212
PsuI RGATCY 2 cut(s) 276, 1781
PvuII CAGCTG 1 cut(s) 688
RsaI GTAC 9 cut(s) 86, 305, 528, 1044, 1804, 1857, 1985, 1998, 2358
RsaNI GTAC 9 cut(s) 85, 304, 527, 1043, 1803, 1856, 1984, 1997, 2357
RseI CAYNNNNRTG 1 cut(s) 1499
SaqAI TTAA 7 cut(s) 597, 965, 1895, 1950, 2043, 2118, 2190
SatI GCNGC 6 cut(s) 174, 483, 591, 606, 2021, 2197
Sau3AI GATC 8 cut(s) 276, 400, 1005, 1066, 1147, 1781, 2112, 2310
Sau96I GGNCC 6 cut(s) 150, 160, 1075, 1115, 2212, 2450
SchI GAGTC 3 cut(s) 201, 911, 2245
ScrFI CCNGG 7 cut(s) 39, 266, 422, 1119, 1964, 2017, 2435
SduI GDGCHC 1 cut(s) 342
SexAI ACCWGGT 1 cut(s) 1962
SfaNI GCATC 3 cut(s) 199, 1432, 1608
SfcI CTRYAG 4 cut(s) 546, 1925, 2102, 2367
SfiI GGCCNNNNNGGCC 1 cut(s) 2415
SfuI TTCGAA 1 cut(s) 1936
SinI GGWCC 6 cut(s) 150, 160, 1075, 1115, 2212, 2450
SmiMI CAYNNNNRTG 1 cut(s) 1499
SmlI CTYRAG 4 cut(s) 121, 326, 1282, 2207
SmoI CTYRAG 4 cut(s) 121, 326, 1282, 2207
SphI GCATGC 1 cut(s) 1241
SseBI AGGCCT 2 cut(s) 640, 2409
SsiI CCGC 6 cut(s) 188, 256, 308, 1675, 1981, 2020
SspI AATATT 1 cut(s) 387
SspMI CTAG 5 cut(s) 519, 552, 890, 999, 1160
StuI AGGCCT 2 cut(s) 640, 2409
StyD4I CCNGG 7 cut(s) 37, 264, 420, 1117, 1962, 2015, 2433
TaaI ACNGT 8 cut(s) 75, 835, 878, 1304, 1594, 1929, 2106, 2126
TaiI ACGT 5 cut(s) 117, 203, 559, 1582, 1690
TaqI TCGA 8 cut(s) 624, 1150, 1275, 1633, 1936, 1974, 2273, 2401
TatI WGTACW 4 cut(s) 84, 526, 1802, 1855
TauI GCSGC 1 cut(s) 2023
TfiI GAWTC 9 cut(s) 311, 734, 1106, 1664, 1736, 1808, 1917, 2143, 2239
Tru1I TTAA 7 cut(s) 597, 965, 1895, 1950, 2043, 2118, 2190
Tru9I TTAA 7 cut(s) 597, 965, 1895, 1950, 2043, 2118, 2190
TscAI CASTG 5 cut(s) 69, 1386, 1570, 1870, 2153
TseI GCWGC 5 cut(s) 173, 482, 590, 605, 2196
TspGWI ACGGA 2 cut(s) 26, 173
TspRI CASTG 5 cut(s) 69, 1386, 1570, 1870, 2153
VneI GTGCAC 1 cut(s) 338
VpaK11BI GGWCC 6 cut(s) 150, 160, 1075, 1115, 2212, 2450
XagI CCTNNNNNAGG 1 cut(s) 2219
XapI RAATTY 9 cut(s) 610, 706, 801, 857, 1329, 1398, 1413, 1771, 2284
XbaI TCTAGA 1 cut(s) 998
XceI RCATGY 1 cut(s) 1241
XcmI CCANNNNNNNNNTGG 1 cut(s) 2145
XmiI GTMKAC 1 cut(s) 717
XmnI GAANNNNTTC 4 cut(s) 733, 948, 1469, 1653
XspI CTAG 5 cut(s) 519, 552, 890, 999, 1160
ZraI GACGTC 1 cut(s) 557
Zsp2I ATGCAT 2 cut(s) 1090, 1623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.