Rh7AG440100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
59589288 .. 59589617
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG440100.1

Sequence Viewer

Length: 330 bp
ATGGATTCTTTGAGAACTCTTGTTATAAGTGGCACAGCCATAAGTGAAGTACCATCCTCGATAGATGAATTGCAATACCTGGACCTTTCATCTCGACAAGGCCTGAGTGGACTAAAACGATTTACCCAGAATGAGATATCAGGACCTAGCCAGGACGAGACATCAGGACCCATAAGTGAAGTACCATCCTCTGTAGATATCTTGTCGACCCTGGAGTTTTCATCTCGACAAGGTCTGAGTGGACTAAAACGACGTTTCTCGACAAGGTCCGACCTAGCGAGGCGACTTTTTAGAGCCATAAGCAGAGCTGCAGAAGCCAATGAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.91

Weight (kDa)

5.2

Isoelectric Point (pI)

70.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36930 AT5G36930 AT5G36930 AT5G36930
fragaria_vesca FvH4_3g45361 FvH4_3g45380 FvH4_5g21061 FvH4_5g21062 FvH4_5g21063 FvH4_5g32050 FvH4_5g32970 FvH4_5g32990 FvH4_5g34190 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34211 FvH4_5g34240 FvH4_5g34250
malus_domestica MD00G1011700.v1.1 MD00G1026100.v1.1 MD00G1026500.v1.1 MD00G1027000.v1.1 MD00G1027100.v1.1 MD00G1027700.v1.1 MD00G1027800.v1.1 MD00G1028000.v1.1 MD00G1220000.v1.1 MD02G1024400.v1.1 MD02G1024800.v1.1 MD02G1026000.v1.1 MD02G1026100.v1.1 MD02G1031800.v1.1 MD02G1038500.v1.1 MD02G1038700.v1.1 MD02G1039200.v1.1 MD02G1040600.v1.1 MD02G1040900.v1.1 MD02G1041200.v1.1 MD02G1041300.v1.1 MD02G1041700.v1.1 MD02G1042000.v1.1 MD02G1043800.v1.1 MD02G1043900.v1.1 MD02G1044300.v1.1 MD02G1045200.v1.1 MD02G1045300.v1.1 MD02G1051200.v1.1 MD02G1052200.v1.1 MD02G1052800.v1.1 MD02G1053100.v1.1 MD02G1053600.v1.1 MD02G1055500.v1.1 MD02G1063300.v1.1 MD02G1063400.v1.1 MD02G1063800.v1.1 MD02G1306500.v1.1 MD02G1306600.v1.1 MD02G1306700.v1.1 MD02G1306900.v1.1 MD02G1307200.v1.1 MD04G1011700.v1.1 MD05G1315400.v1.1 MD05G1316000.v1.1 MD05G1316700.v1.1 MD05G1317000.v1.1 MD05G1317300.v1.1 MD05G1317600.v1.1 MD05G1317700.v1.1 MD07G1102800.v1.1 MD07G1238200.v1.1 MD08G1175900.v1.1 MD08G1203600.v1.1 MD09G1024200.v1.1 MD09G1039600.v1.1 MD09G1044800.v1.1 MD09G1045100.v1.1 MD10G1038700.v1.1 MD10G1039000.v1.1 MD10G1039200.v1.1 MD10G1040000.v1.1 MD10G1040200.v1.1 MD10G1040600.v1.1 MD10G1040800.v1.1 MD10G1297300.v1.1 MD12G1247500.v1.1 MD12G1247900.v1.1 MD12G1248300.v1.1 MD12G1248800.v1.1 MD15G1103700.v1.1 MD15G1103800.v1.1 MD15G1104000.v1.1 MD15G1179600.v1.1 MD15G1182500.v1.1 MD16G1068200.v1.1 MD16G1068300.v1.1 MD17G1024600.v1.1 MD17G1024700.v1.1 MD17G1025000.v1.1 MD17G1025900.v1.1
prunus_persica Prupe.1G539800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G557100_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557300_v2.0.a1
pyrus_communis pycom02g02080 pycom02g02090 pycom02g02110 pycom02g03220 pycom02g03260 pycom02g03370 pycom02g03390 pycom02g03410 pycom02g03420 pycom02g03450 pycom02g03500 pycom02g03730 pycom02g03770 pycom02g04400 pycom02g04410 pycom02g04430 pycom02g04450 pycom02g04460 pycom02g04490 pycom02g05200 pycom02g25710 pycom02g25750 pycom02g25790 pycom02g25810 pycom02g25830 pycom04g00920 pycom04g00930 pycom04g00940 pycom05g29300 pycom05g29310 pycom05g29380 pycom05g29410 pycom07g06310 pycom07g21420 pycom08g15070 pycom08g17540 pycom08g17560 pycom08g17570 pycom10g02670 pycom10g02680 pycom10g02700 pycom10g02770 pycom10g02790 pycom10g02800 pycom10g02810 pycom10g25020 pycom10g25030 pycom10g25050 pycom10g25080 pycom111g01990 pycom111g02000 pycom111g02030 pycom111g02040 pycom111g02050 pycom111g02060 pycom12g22710 pycom12g22720 pycom12g22730 pycom12g22740 pycom12g22750 pycom12g22770 pycom12g22780 pycom12g22790 pycom12g22800 pycom12g22810 pycom12g22830 pycom12g22840 pycom12g22860 pycom15g09440 pycom15g09480 pycom15g16120 pycom15g32380 pycom16g05970 pycom17g02100
rosa_chinensis RchiOBHm_Chr2g0144661 RchiOBHm_Chr4g0407491 RchiOBHm_Chr4g0407501 RchiOBHm_Chr4g0412381 RchiOBHm_Chr7g0208191 RchiOBHm_Chr7g0208201 RchiOBHm_Chr7g0208211 RchiOBHm_Chr7g0208221 RchiOBHm_Chr7g0228071 RchiOBHm_Chr7g0228121 RchiOBHm_Chr7g0230971 RchiOBHm_Chr7g0230981 RchiOBHm_Chr7g0233901 RchiOBHm_Chr7g0233951 RchiOBHm_Chr7g0233961 RchiOBHm_Chr7g0233991 RchiOBHm_Chr7g0234021 RchiOBHm_Chr7g0234151 RchiOBHm_Chr7g0234161 RchiOBHm_Chr7g0234241 RchiOBHm_Chr7g0234501 RchiOBHm_Chr7g0234641 RchiOBHm_Chr7g0234771 RchiOBHm_Chr7g0234781 RchiOBHm_Chr7g0234991 RchiOBHm_Chr7g0241291 RchiOBHm_Chr7g0241301
rosa_laevigata RLG00000001186 RLG00000001187 RLG00000001212 RLG00000001226 RLG00000001233 RLG00000001590 RLG00000003242 RLG00000003243 RLG00000003249 RLG00000008688 RLG00000008690
rosa_multiflora Rmu_co7966574.1_g000001 Rmu_co8120830.1_g000001 Rmu_co8142226.1_g000001 Rmu_co8293083.1_g000001 Rmu_co8351227.1_g000001 Rmu_co8380159.1_g000001 Rmu_co8456505.1_g000001 Rmu_sc0000676.1_g000025 Rmu_sc0000706.1_g000018 Rmu_sc0000706.1_g000040 Rmu_sc0000740.1_g000029 Rmu_sc0000740.1_g000032 Rmu_sc0000740.1_g000037 Rmu_sc0000740.1_g000040 Rmu_sc0000762.1_g000003 Rmu_sc0000762.1_g000019 Rmu_sc0000762.1_g000034 Rmu_sc0000762.1_g000069 Rmu_sc0000892.1_g000001 Rmu_sc0000945.1_g000040 Rmu_sc0001913.1_g000037 Rmu_sc0001913.1_g000041 Rmu_sc0001913.1_g000049 Rmu_sc0002775.1_g000017 Rmu_sc0002775.1_g000018 Rmu_sc0002775.1_g000020 Rmu_sc0002775.1_g000021 Rmu_sc0002775.1_g000022 Rmu_sc0002775.1_g000025 Rmu_sc0002775.1_g000026 Rmu_sc0002775.1_g000028 Rmu_sc0002775.1_g000030 Rmu_sc0004858.1_g000002 Rmu_sc0004864.1_g000022 Rmu_sc0005038.1_g000023 Rmu_sc0005840.1_g000014 Rmu_sc0006724.1_g000003 Rmu_sc0006824.1_g000005 Rmu_sc0007869.1_g000003 Rmu_sc0007869.1_g000005 Rmu_sc0007869.1_g000008 Rmu_sc0008646.1_g000007 Rmu_sc0009637.1_g000009 Rmu_sc0010500.1_g000002 Rmu_sc0010500.1_g000012 Rmu_sc0012403.1_g000025 Rmu_sc0013768.1_g000025 Rmu_sc0015625.1_g000001 Rmu_sc0019715.1_g000001 Rmu_sc0021133.1_g000002 Rmu_sc0021904.1_g000001 Rmu_sc0021904.1_g000003 Rmu_sc0021904.1_g000004 Rmu_sc0022054.1_g000001 Rmu_sc0026025.1_g000001 Rmu_sc0036828.1_g000002 Rmu_sc0041808.1_g000001 Rmu_ssc0000012.1_g000001
rosa_roxburghii Rroxscaffold_3G00226370 Rroxscaffold_3G00226860 Rroxscaffold_3G00226900 Rroxscaffold_3G00226930 Rroxscaffold_3G00226940 Rroxscaffold_3G00226970 Rroxscaffold_3G00226980 Rroxscaffold_3G00231530 Rroxscaffold_3G00237090 Rroxscaffold_3G00250760 Rroxscaffold_3G00250800
rosa_rugosa Rorug04G0082300 Rorug07G0101800 Rorug07G0102000 Rorug07G0102100 Rorug07G0221200 Rorug07G0245700 Rorug07G0245700 Rorug07G0245700 Rorug07G0263900 Rorug07G0264000 Rorug07G0264000 Rorug07G0264500 Rorug07G0282900 Rorug07G0282900 Rorug07G0283100 Rorug07G0283200.1 Rorug07G0283300 Rorug07G0283900 Rorug07G0284000 Rorug07G0284100 Rorug07G0284300 Rorug07G0284400 Rorug07G0284500 Rorug07G0285000 Rorug07G0285200 Rorug07G0285300 Rorug07G0285500 Rorug07G0286800 Rorug07G0286900 Rorug07G0287100 Rorug07G0287200
rosa_samantha Rh7AG236100 Rh7AG236200 Rh7AG236300 Rh7AG440000 Rh7AG440100 Rh7BG411900 Rh7BG412000 Rh7BG412600 Rh7CG251300 Rh7CG417700 Rh7CG460100 Rh7DG242100 Rh7DG242200 Rh7DG242300 Rh7DG429300
rosa_wichuraiana Rw0G005070 Rw0G010780 Rw0G012530 Rw7G020110 Rw7G020160 Rw7G020170 Rw7G033210 Rw7G033230 Rw7G033250 Rw7G034540 Rw7G035150 Rw7G036190 Rw7G036210 Rw7G036260 Rw7G036270 Rw7G036290 Rw7G036300 Rw7G036310 Rw7G036350 Rw7G036360 Rw7G036440 Rw7G036510 Rw7G036530 Rw7G036570 Rw7G036590 Rw7G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 26
AccI GTMKAC 1 cut(s) 206
AfaI GTAC 2 cut(s) 51, 183
AjnI CCWGG 3 cut(s) 78, 150, 210
AluBI AGCT 1 cut(s) 308
AluI AGCT 1 cut(s) 308
Alw26I GTCTC 1 cut(s) 152
AoxI GGCC 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 308
AspS9I GGNCC 4 cut(s) 82, 143, 167, 267
AvaII GGWCC 4 cut(s) 82, 143, 167, 267
BbvI GCAGC 1 cut(s) 295
BccI CCATC 2 cut(s) 61, 193
BciT130I CCWGG 3 cut(s) 80, 152, 212
BcoDI GTCTC 1 cut(s) 152
BfaI CTAG 2 cut(s) 147, 275
BfmI CTRYAG 2 cut(s) 192, 309
BisI GCNGC 1 cut(s) 309
BlsI GCNGC 1 cut(s) 310
Bme1390I CCNGG 3 cut(s) 80, 152, 212
Bme18I GGWCC 4 cut(s) 82, 143, 167, 267
BmgT120I GGNCC 4 cut(s) 82, 143, 167, 267
BmiI GGNNCC 1 cut(s) 169
BmrFI CCNGG 3 cut(s) 80, 152, 212
BpmI CTGGAG 1 cut(s) 233
BsaJI CCNNGG 1 cut(s) 210
BseBI CCWGG 3 cut(s) 80, 152, 212
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 2 cut(s) 53, 185
BseMII CTCAG 2 cut(s) 95, 227
BseXI GCAGC 1 cut(s) 295
BshFI GGCC 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 152
BsnI GGCC 1 cut(s) 102
BspANI GGCC 1 cut(s) 102
BspCNI CTCAG 2 cut(s) 96, 228
BspLI GGNNCC 1 cut(s) 169
BspMAI CTGCAG 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 210
Bst2UI CCWGG 3 cut(s) 80, 152, 212
Bst6I CTCTTC 1 cut(s) 318
BstDEI CTNAG 2 cut(s) 104, 236
BstF5I GGATG 2 cut(s) 53, 185
BstMAI GTCTC 1 cut(s) 152
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNI CCWGG 3 cut(s) 80, 152, 212
BstSCI CCNGG 3 cut(s) 78, 150, 210
BstSFI CTRYAG 2 cut(s) 192, 309
BstV1I GCAGC 1 cut(s) 295
BsuRI GGCC 1 cut(s) 102
BtsCI GGATG 2 cut(s) 53, 185
Cfr13I GGNCC 4 cut(s) 82, 143, 167, 267
Csp6I GTAC 2 cut(s) 50, 182
CviJI RGCY 6 cut(s) 38, 102, 150, 296, 308, 317
CviKI_1 RGCY 6 cut(s) 38, 102, 150, 296, 308, 317
CviQI GTAC 2 cut(s) 50, 182
DdeI CTNAG 2 cut(s) 104, 236
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
Eco147I AGGCCT 1 cut(s) 102
Eco32I GATATC 2 cut(s) 138, 199
Eco47I GGWCC 4 cut(s) 82, 143, 167, 267
EcoO109I RGGNCCY 2 cut(s) 143, 167
EcoRII CCWGG 3 cut(s) 78, 150, 210
EcoRV GATATC 2 cut(s) 138, 199
FaiI YATR 4 cut(s) 26, 41, 173, 299
FblI GTMKAC 1 cut(s) 206
Fnu4HI GCNGC 1 cut(s) 309
FokI GGATG 2 cut(s) 40, 172
Fsp4HI GCNGC 1 cut(s) 309
FspBI CTAG 2 cut(s) 147, 275
GluI GCNGC 1 cut(s) 309
GsuI CTGGAG 1 cut(s) 233
HaeIII GGCC 1 cut(s) 102
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HinfI GANTC 1 cut(s) 5
Hpy166II GTNNAC 3 cut(s) 110, 207, 242
Hpy188I TCNGA 2 cut(s) 237, 271
Hpy188III TCNNGA 5 cut(s) 93, 141, 165, 225, 259
Hpy8I GTNNAC 3 cut(s) 110, 207, 242
Hpy99I CGWCG 1 cut(s) 255
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 2 cut(s) 73, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 2 cut(s) 104, 236
HpySE526I ACGT 1 cut(s) 253
Lsp1109I GCAGC 1 cut(s) 295
MaeI CTAG 2 cut(s) 147, 275
MaeII ACGT 1 cut(s) 253
MluCI AATT 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 3 cut(s) 67, 199, 273
MspR9I CCNGG 3 cut(s) 80, 152, 212
MvaI CCWGG 3 cut(s) 80, 152, 212
MwoI GCNNNNNNNGC 1 cut(s) 314
NlaIV GGNNCC 1 cut(s) 169
PceI AGGCCT 1 cut(s) 102
PfeI GAWTC 1 cut(s) 5
PflFI GACNNNGTC 2 cut(s) 231, 265
PkrI GCNGC 1 cut(s) 310
PpuMI RGGWCCY 2 cut(s) 143, 167
PsiI TTATAA 1 cut(s) 26
Psp5II RGGWCCY 2 cut(s) 143, 167
Psp6I CCWGG 3 cut(s) 78, 150, 210
PspGI CCWGG 3 cut(s) 78, 150, 210
PspN4I GGNNCC 1 cut(s) 169
PspPI GGNCC 4 cut(s) 82, 143, 167, 267
PspPPI RGGWCCY 2 cut(s) 143, 167
PstI CTGCAG 1 cut(s) 313
PsyI GACNNNGTC 2 cut(s) 231, 265
RsaI GTAC 2 cut(s) 51, 183
RsaNI GTAC 2 cut(s) 50, 182
SalI GTCGAC 1 cut(s) 205
SatI GCNGC 1 cut(s) 309
Sau96I GGNCC 4 cut(s) 82, 143, 167, 267
ScrFI CCNGG 3 cut(s) 80, 152, 212
SetI ASST 8 cut(s) 81, 87, 148, 235, 256, 269, 276, 310
SfcI CTRYAG 2 cut(s) 192, 309
SinI GGWCC 4 cut(s) 82, 143, 167, 267
Sse9I AATT 1 cut(s) 68
SseBI AGGCCT 1 cut(s) 102
SspMI CTAG 2 cut(s) 147, 275
StuI AGGCCT 1 cut(s) 102
StyD4I CCNGG 3 cut(s) 78, 150, 210
TaiI ACGT 1 cut(s) 256
TaqI TCGA 5 cut(s) 59, 94, 206, 226, 260
TasI AATT 1 cut(s) 68
TfiI GAWTC 1 cut(s) 5
TseI GCWGC 1 cut(s) 308
TspDTI ATGAA 3 cut(s) 78, 81, 210
Tth111I GACNNNGTC 2 cut(s) 231, 265
VpaK11BI GGWCC 4 cut(s) 82, 143, 167, 267
XmiI GTMKAC 1 cut(s) 206
XspI CTAG 2 cut(s) 147, 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.