RchiOBHm_Chr4g0407491

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000055
Physical Location & Seq
Reverse (-)
29742905 .. 29746619
3715 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37872

Sequence Viewer

Length: 2478 bp
ATGAATGAAGAAGAAGCTCTTGAGCTCTTTAGTTGGCATGCTTTTGGTAATAGTTGTCCTGATGAAGAATATTTAGAACTCTCAAGAAGTGTGATCACATATTGTGGGGGTTTGCCACTAGCTCTTGAAGTATTAGGATGTTTCCTGTTGGGAAGGAGCATTATAGAGTGGGAAAGTGCACTGGAGAAATTGGAGAGAATTCTTGATAATGACCAAATATGGGAAAAGCTCCGAATCAGCATTGATGGACTAAATAAGGATGGAAAGGAAATATTTCTTGACATACCTTGTTTCTTTATTGGAATGGATAAGAACTATGTCATACAAATATTGGATGGTTGCGGCTTTTCCGCAGAAATAGAAATCAGAGTCCTCATTCAACGGTGTCTTGTAACTGTTGATGAAGCAAACAAGCTAATGATGCATGATTTACTTCGAGATATGGGTAGAGAAATGGTACGTGCAGAATCTACTAACCTCCCTGGAAAACGTAGTAGAGTTTGGCGTCGGGACGATGCAATAGATGTACTGACGGATAAATCTGGAGCTGAAGAAATTCTAGGAATCACTCTAAATGTATCTGGACATGACAATGTAAGTTTTAGTACAGAAGCATTTACGAATATGAAGAATGTGAGATTTCTCCAACTGAACTACGTACAAGTCAGTGAAGACTGCAAATATCATCCCATGCGCCAGTTAAGATGGTTGTGCTGGCATGGGTGTCCTCTGGACTTCATACCACATGACTTTATGCAACAAAACCTAGTTGCTATTGAACTACAGTATAGCAACCTCACACAAGCTTGGAAAGATTGTGAGTTACTTGGGAAGCTAAAGATTCTTAATCTCAGTCACTGCTATGGCATAACACAATTGCCAAACTTTTTGAAACTCCCAAATCTAGAGCAGTTGATACTTGAACACTGTGAGTGCTTGTCCGAGGTTCACGAGTCCATTGGAGAACTTAAATCACTTTTTTTTGTAAATTTGCAAGACTGCAAAATGCTTAAGGATCTGCCAAGGAGTTTCTATAAGTTGAAGTCTATTGAAACTCTTCTCCTCTCAGGTTGTTCAAAATTTGAAACCCTGGAGGAAAACGTAAGGGAGATGTTATCACTGACTACTCTTTTCGCAGATTTCACAGCTATAAGAATAATACCATCCATGGTACGGTTGGAGAACCTGGAATCATTGTCTCTATGTGGCCTCAAATCTTTATATCTGGAATCACCTCCTTTGTTACAGGGATTGGTTCATTTAAAGGAAGTATATCTTACAGACTGCAACTTAACTGATGATGTAGTATTTCCTAAGGATCTCGCGAGAACTCATTCTTCTTTAGAAGTTTTAGATCTAACTGGAAATAATTTTCATAGCCTTCCAAGATTAAGTGGCCTTTGGATGCTTCAAGTTTTATCATTGGAAAACTGCAATTTAACTGATGATGCAATTCCACAATTTGGGACTCTACCTTCTTTAGTAAAATTGGCTCTAGGAGGCAATAAATTTTGTTGGCTTCCAAGCCTCGAGGGCCTTTTGAAGCTTGAGATTCTACTTCTGAATGATTGCAAAAACCTTCATGCAATCCCTATGTTACCAACAAGTTTGAAGAGGCTGAATGCTGATGAATGCATTGAGTTGATACGAATCCCAAATTTTTCCGAAATGTCAAATATGACGATGCTGCAACTAAATGGGTGTGTCAGCTTGAATGAGTTACCAGGCTTGGATGAGTCGTTAAACTGCATGATGACACTGAGAATGCTAGGTACCAACAACGTCACCAAGGATTTTCTTACTGAGAGCTTCTTACAGGGATGGACAGGATCTGGTGTAATTTATCTTCCTGGAAATGTAGTCCCGGAGTGGTTCCCTGATTTCAGGGGTACCCAACATTTCAATATGCCTCAGATCATTGGTTGCAATTTCAACGTGTTGACTCTGTGCATCGTTTATTCTTCGTGTCATGACGTATTTCATTCCCCTGAGATTTTCATACATATTATTAATTGTACCAAGAAGAGGAAATTTGTCACCCAGATAGAAGGCATAGTAAAAGCTTCAGATGAAGATTATCTTTTACTGGCACAGATACCAACCAAAGAGTGCAATTTGGAAAGTGGCGACCTCGTCAAGGTTGTTGTAAGACCTGAAGATAGTTATTTGGAGGTGAAGTATGTAACGGTTCGAGTATGTGACAAAGCTATTAACTCGCAAAATGAATTTTGGTATCAGTTTTGGTATTTGGCTGATGATAATGATAGTGACAGAGAAGATTATTATGGCTTTGATCTCGAGTGTGATTATACGTATGATTATACATATGATTATACATATACGTATGATTATACATATGATTATACGTATGATTATACATATGATTATACGTATGATTATACGTATGATTATACATATGATATGTGTATAGATGATGATGATCTTAATTTTTATGATGACTATGATAGTGATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

825

Amino Acids

95.23

Weight (kDa)

4.55

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_ROQ1 PF23282 86 - 157 1.4e-18 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36930 AT5G36930 AT5G36930 AT5G36930
fragaria_vesca FvH4_3g45361 FvH4_3g45380 FvH4_5g21061 FvH4_5g21062 FvH4_5g21063 FvH4_5g32050 FvH4_5g32970 FvH4_5g32990 FvH4_5g34190 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34211 FvH4_5g34240 FvH4_5g34250
malus_domestica MD00G1011700.v1.1 MD00G1026100.v1.1 MD00G1026500.v1.1 MD00G1027000.v1.1 MD00G1027100.v1.1 MD00G1027700.v1.1 MD00G1027800.v1.1 MD00G1028000.v1.1 MD00G1220000.v1.1 MD02G1024400.v1.1 MD02G1024800.v1.1 MD02G1026000.v1.1 MD02G1026100.v1.1 MD02G1031800.v1.1 MD02G1038500.v1.1 MD02G1038700.v1.1 MD02G1039200.v1.1 MD02G1040600.v1.1 MD02G1040900.v1.1 MD02G1041200.v1.1 MD02G1041300.v1.1 MD02G1041700.v1.1 MD02G1042000.v1.1 MD02G1043800.v1.1 MD02G1043900.v1.1 MD02G1044300.v1.1 MD02G1045200.v1.1 MD02G1045300.v1.1 MD02G1051200.v1.1 MD02G1052200.v1.1 MD02G1052800.v1.1 MD02G1053100.v1.1 MD02G1053600.v1.1 MD02G1055500.v1.1 MD02G1063300.v1.1 MD02G1063400.v1.1 MD02G1063800.v1.1 MD02G1306500.v1.1 MD02G1306600.v1.1 MD02G1306700.v1.1 MD02G1306900.v1.1 MD02G1307200.v1.1 MD04G1011700.v1.1 MD05G1315400.v1.1 MD05G1316000.v1.1 MD05G1316700.v1.1 MD05G1317000.v1.1 MD05G1317300.v1.1 MD05G1317600.v1.1 MD05G1317700.v1.1 MD07G1102800.v1.1 MD07G1238200.v1.1 MD08G1175900.v1.1 MD08G1203600.v1.1 MD09G1024200.v1.1 MD09G1039600.v1.1 MD09G1044800.v1.1 MD09G1045100.v1.1 MD10G1038700.v1.1 MD10G1039000.v1.1 MD10G1039200.v1.1 MD10G1040000.v1.1 MD10G1040200.v1.1 MD10G1040600.v1.1 MD10G1040800.v1.1 MD10G1297300.v1.1 MD12G1247500.v1.1 MD12G1247900.v1.1 MD12G1248300.v1.1 MD12G1248800.v1.1 MD15G1103700.v1.1 MD15G1103800.v1.1 MD15G1104000.v1.1 MD15G1179600.v1.1 MD15G1182500.v1.1 MD16G1068200.v1.1 MD16G1068300.v1.1 MD17G1024600.v1.1 MD17G1024700.v1.1 MD17G1025000.v1.1 MD17G1025900.v1.1
prunus_persica Prupe.1G539800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G557100_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557300_v2.0.a1
pyrus_communis pycom02g02080 pycom02g02090 pycom02g02110 pycom02g03220 pycom02g03260 pycom02g03370 pycom02g03390 pycom02g03410 pycom02g03420 pycom02g03450 pycom02g03500 pycom02g03730 pycom02g03770 pycom02g04400 pycom02g04410 pycom02g04430 pycom02g04450 pycom02g04460 pycom02g04490 pycom02g05200 pycom02g25710 pycom02g25750 pycom02g25790 pycom02g25810 pycom02g25830 pycom04g00920 pycom04g00930 pycom04g00940 pycom05g29300 pycom05g29310 pycom05g29380 pycom05g29410 pycom07g06310 pycom07g21420 pycom08g15070 pycom08g17540 pycom08g17560 pycom08g17570 pycom10g02670 pycom10g02680 pycom10g02700 pycom10g02770 pycom10g02790 pycom10g02800 pycom10g02810 pycom10g25020 pycom10g25030 pycom10g25050 pycom10g25080 pycom111g01990 pycom111g02000 pycom111g02030 pycom111g02040 pycom111g02050 pycom111g02060 pycom12g22710 pycom12g22720 pycom12g22730 pycom12g22740 pycom12g22750 pycom12g22770 pycom12g22780 pycom12g22790 pycom12g22800 pycom12g22810 pycom12g22830 pycom12g22840 pycom12g22860 pycom15g09440 pycom15g09480 pycom15g16120 pycom15g32380 pycom16g05970 pycom17g02100
rosa_chinensis RchiOBHm_Chr2g0144661 RchiOBHm_Chr4g0407491 RchiOBHm_Chr4g0407501 RchiOBHm_Chr4g0412381 RchiOBHm_Chr7g0208191 RchiOBHm_Chr7g0208201 RchiOBHm_Chr7g0208211 RchiOBHm_Chr7g0208221 RchiOBHm_Chr7g0228071 RchiOBHm_Chr7g0228121 RchiOBHm_Chr7g0230971 RchiOBHm_Chr7g0230981 RchiOBHm_Chr7g0233901 RchiOBHm_Chr7g0233951 RchiOBHm_Chr7g0233961 RchiOBHm_Chr7g0233991 RchiOBHm_Chr7g0234021 RchiOBHm_Chr7g0234151 RchiOBHm_Chr7g0234161 RchiOBHm_Chr7g0234241 RchiOBHm_Chr7g0234501 RchiOBHm_Chr7g0234641 RchiOBHm_Chr7g0234771 RchiOBHm_Chr7g0234781 RchiOBHm_Chr7g0234991 RchiOBHm_Chr7g0241291 RchiOBHm_Chr7g0241301
rosa_laevigata RLG00000001186 RLG00000001187 RLG00000001212 RLG00000001226 RLG00000001233 RLG00000001590 RLG00000003242 RLG00000003243 RLG00000003249 RLG00000008688 RLG00000008690
rosa_multiflora Rmu_co7966574.1_g000001 Rmu_co8120830.1_g000001 Rmu_co8142226.1_g000001 Rmu_co8293083.1_g000001 Rmu_co8351227.1_g000001 Rmu_co8380159.1_g000001 Rmu_co8456505.1_g000001 Rmu_sc0000676.1_g000025 Rmu_sc0000706.1_g000018 Rmu_sc0000706.1_g000040 Rmu_sc0000740.1_g000029 Rmu_sc0000740.1_g000032 Rmu_sc0000740.1_g000037 Rmu_sc0000740.1_g000040 Rmu_sc0000762.1_g000003 Rmu_sc0000762.1_g000019 Rmu_sc0000762.1_g000034 Rmu_sc0000762.1_g000069 Rmu_sc0000892.1_g000001 Rmu_sc0000945.1_g000040 Rmu_sc0001913.1_g000037 Rmu_sc0001913.1_g000041 Rmu_sc0001913.1_g000049 Rmu_sc0002775.1_g000017 Rmu_sc0002775.1_g000018 Rmu_sc0002775.1_g000020 Rmu_sc0002775.1_g000021 Rmu_sc0002775.1_g000022 Rmu_sc0002775.1_g000025 Rmu_sc0002775.1_g000026 Rmu_sc0002775.1_g000028 Rmu_sc0002775.1_g000030 Rmu_sc0004858.1_g000002 Rmu_sc0004864.1_g000022 Rmu_sc0005038.1_g000023 Rmu_sc0005840.1_g000014 Rmu_sc0006724.1_g000003 Rmu_sc0006824.1_g000005 Rmu_sc0007869.1_g000003 Rmu_sc0007869.1_g000005 Rmu_sc0007869.1_g000008 Rmu_sc0008646.1_g000007 Rmu_sc0009637.1_g000009 Rmu_sc0010500.1_g000002 Rmu_sc0010500.1_g000012 Rmu_sc0012403.1_g000025 Rmu_sc0013768.1_g000025 Rmu_sc0015625.1_g000001 Rmu_sc0019715.1_g000001 Rmu_sc0021133.1_g000002 Rmu_sc0021904.1_g000001 Rmu_sc0021904.1_g000003 Rmu_sc0021904.1_g000004 Rmu_sc0022054.1_g000001 Rmu_sc0026025.1_g000001 Rmu_sc0036828.1_g000002 Rmu_sc0041808.1_g000001 Rmu_ssc0000012.1_g000001
rosa_roxburghii Rroxscaffold_3G00226370 Rroxscaffold_3G00226860 Rroxscaffold_3G00226900 Rroxscaffold_3G00226930 Rroxscaffold_3G00226940 Rroxscaffold_3G00226970 Rroxscaffold_3G00226980 Rroxscaffold_3G00231530 Rroxscaffold_3G00237090 Rroxscaffold_3G00250760 Rroxscaffold_3G00250800
rosa_rugosa Rorug04G0082300 Rorug07G0101800 Rorug07G0102000 Rorug07G0102100 Rorug07G0221200 Rorug07G0245700 Rorug07G0245700 Rorug07G0245700 Rorug07G0263900 Rorug07G0264000 Rorug07G0264000 Rorug07G0264500 Rorug07G0282900 Rorug07G0282900 Rorug07G0283100 Rorug07G0283200.1 Rorug07G0283300 Rorug07G0283900 Rorug07G0284000 Rorug07G0284100 Rorug07G0284300 Rorug07G0284400 Rorug07G0284500 Rorug07G0285000 Rorug07G0285200 Rorug07G0285300 Rorug07G0285500 Rorug07G0286800 Rorug07G0286900 Rorug07G0287100 Rorug07G0287200
rosa_samantha Rh7AG236100 Rh7AG236200 Rh7AG236300 Rh7AG440000 Rh7AG440100 Rh7BG411900 Rh7BG412000 Rh7BG412600 Rh7CG251300 Rh7CG417700 Rh7CG460100 Rh7DG242100 Rh7DG242200 Rh7DG242300 Rh7DG429300
rosa_wichuraiana Rw0G005070 Rw0G010780 Rw0G012530 Rw7G020110 Rw7G020160 Rw7G020170 Rw7G033210 Rw7G033230 Rw7G033250 Rw7G034540 Rw7G035150 Rw7G036190 Rw7G036210 Rw7G036260 Rw7G036270 Rw7G036290 Rw7G036300 Rw7G036310 Rw7G036350 Rw7G036360 Rw7G036440 Rw7G036510 Rw7G036530 Rw7G036570 Rw7G036590 Rw7G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1529
Acc65I GGTACC 2 cut(s) 1772, 1889
AccB1I GGYRCC 2 cut(s) 1772, 1889
AccB7I CCANNNNNTGG 1 cut(s) 1463
AccII CGCG 1 cut(s) 1325
AciI CCGC 2 cut(s) 342, 351
AclWI GGATC 3 cut(s) 1023, 1326, 1837
AcsI RAATTY 8 cut(s) 198, 555, 988, 1079, 1508, 1657, 2030, 2225
AcuI CTGAAG 3 cut(s) 570, 2049, 2175
AcyI GRCGYC 1 cut(s) 505
AfaI GTAC 8 cut(s) 459, 528, 607, 660, 1173, 1774, 1891, 2017
AfiI CCNNNNNNNGG 5 cut(s) 220, 1173, 1463, 2025, 2137
AflII CTTAAG 1 cut(s) 1010
AflIII ACRYGT 1 cut(s) 1935
AjnI CCWGG 5 cut(s) 481, 1089, 1185, 1723, 1849
Alw21I GWGCWC 2 cut(s) 27, 181
Alw26I GTCTC 1 cut(s) 1203
Alw44I GTGCAC 1 cut(s) 177
AlwI GGATC 3 cut(s) 1023, 1326, 1837
AlwNI CAGNNNCTG 2 cut(s) 858, 1832
Ama87I CYCGRG 2 cut(s) 1529, 2297
AoxI GGCC 3 cut(s) 1207, 1396, 1534
ApaLI GTGCAC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 1687
ApoI RAATTY 8 cut(s) 198, 555, 988, 1079, 1508, 1657, 2030, 2225
AseI ATTAAT 1 cut(s) 2010
Asp700I GAANNNNTTC 4 cut(s) 273, 555, 1056, 1333
Asp718I GGTACC 2 cut(s) 1772, 1889
AspLEI GCGC 1 cut(s) 696
AspS9I GGNCC 1 cut(s) 1534
AsuC2I CCSGG 1 cut(s) 1865
AsuHPI GGTGA 4 cut(s) 1224, 1777, 2029, 2185
AvaI CYCGRG 2 cut(s) 1529, 2297
AxyI CCTNAGG 1 cut(s) 1314
BaeGI GKGCMC 1 cut(s) 181
BanI GGYRCC 2 cut(s) 1772, 1889
BanII GRGCYC 1 cut(s) 27
BarI GAAGNNNNNNTAC 2 cut(s) 1830, 1862
BauI CACGAG 1 cut(s) 950
BbsI GAAGAC 1 cut(s) 678
Bbv12I GWGCWC 2 cut(s) 27, 181
BbvI GCAGC 1 cut(s) 1674
BccI CCATC 6 cut(s) 239, 254, 329, 699, 1171, 1815
BciT130I CCWGG 5 cut(s) 483, 1091, 1187, 1725, 1851
BclI TGATCA 1 cut(s) 93
BcnI CCSGG 1 cut(s) 1865
BcoDI GTCTC 1 cut(s) 1203
BfaI CTAG 6 cut(s) 119, 560, 767, 905, 1496, 1769
BfmI CTRYAG 1 cut(s) 782
BfrI CTTAAG 1 cut(s) 1010
BglI GCCNNNNNGGC 1 cut(s) 1533
BglII AGATCT 1 cut(s) 1354
BisI GCNGC 2 cut(s) 343, 1688
BlsI GCNGC 2 cut(s) 344, 1689
Bme1390I CCNGG 6 cut(s) 483, 1091, 1187, 1725, 1851, 1865
BmeT110I CYCGRG 2 cut(s) 1529, 2297
BmgT120I GGNCC 1 cut(s) 1534
BmiI GGNNCC 3 cut(s) 1774, 1874, 1891
BmrFI CCNGG 6 cut(s) 483, 1091, 1187, 1725, 1851, 1865
BmsI GCATC 6 cut(s) 411, 505, 1395, 1438, 1674, 1959
BpiI GAAGAC 1 cut(s) 678
BpmI CTGGAG 3 cut(s) 203, 564, 1112
BpuEI CTTGAG 3 cut(s) 41, 67, 1568
BpuMI CCSGG 1 cut(s) 1865
BsaAI YACGTR 7 cut(s) 461, 658, 2313, 2343, 2367, 2391, 2403
BsaBI GATNNNNATC 2 cut(s) 1649, 2439
BsaHI GRCGYC 1 cut(s) 505
BsaJI CCNNGG 6 cut(s) 481, 942, 1022, 1089, 1167, 1788
BsaXI ACNNNNNCTCC 2 cut(s) 2162, 2192
Bsc4I CCNNNNNNNGG 5 cut(s) 220, 1173, 1463, 2025, 2137
Bse1I ACTGG 4 cut(s) 186, 697, 1366, 2091
Bse21I CCTNAGG 1 cut(s) 1314
Bse8I GATNNNNATC 2 cut(s) 1649, 2439
BseBI CCWGG 5 cut(s) 483, 1091, 1187, 1725, 1851
BseDI CCNNGG 6 cut(s) 481, 942, 1022, 1089, 1167, 1788
BseGI GGATG 8 cut(s) 143, 265, 340, 685, 1163, 1410, 1738, 1826
BseJI GATNNNNATC 2 cut(s) 1649, 2439
BseLI CCNNNNNNNGG 5 cut(s) 220, 1173, 1463, 2025, 2137
BseMII CTCAG 6 cut(s) 865, 1080, 1751, 1794, 1925, 1980
BseNI ACTGG 4 cut(s) 186, 697, 1366, 2091
BseRI GAGGAG 1 cut(s) 1052
BseSI GKGCMC 1 cut(s) 181
BseXI GCAGC 1 cut(s) 1674
BsgI GTGCAG 1 cut(s) 483
Bsh1236I CGCG 1 cut(s) 1325
BshFI GGCC 3 cut(s) 1209, 1398, 1536
BshNI GGYRCC 2 cut(s) 1772, 1889
BsiHKAI GWGCWC 2 cut(s) 27, 181
BsiHKCI CYCGRG 2 cut(s) 1529, 2297
BsiSI CCGG 1 cut(s) 1865
BslFI GGGAC 3 cut(s) 524, 1480, 1847
BslI CCNNNNNNNGG 5 cut(s) 220, 1173, 1463, 2025, 2137
BsmAI GTCTC 1 cut(s) 1203
BsmFI GGGAC 3 cut(s) 524, 1480, 1847
BsmI GAATGC 3 cut(s) 1627, 1637, 1770
BsnI GGCC 3 cut(s) 1209, 1398, 1536
BsoBI CYCGRG 2 cut(s) 1529, 2297
Bsp1286I GDGCHC 2 cut(s) 27, 181
Bsp143I GATC 8 cut(s) 93, 1015, 1318, 1354, 1829, 1914, 2293, 2440
Bsp19I CCATGG 1 cut(s) 1167
Bsp68I TCGCGA 1 cut(s) 1325
BspACI CCGC 2 cut(s) 342, 351
BspANI GGCC 3 cut(s) 1209, 1398, 1536
BspCNI CTCAG 6 cut(s) 864, 1079, 1752, 1795, 1924, 1981
BspFNI CGCG 1 cut(s) 1325
BspHI TCATGA 1 cut(s) 1969
BspLI GGNNCC 3 cut(s) 1774, 1874, 1891
BspPI GGATC 3 cut(s) 1023, 1326, 1837
BspT107I GGYRCC 2 cut(s) 1772, 1889
BspTI CTTAAG 1 cut(s) 1010
BsrI ACTGG 4 cut(s) 186, 697, 1366, 2091
BssECI CCNNGG 6 cut(s) 481, 942, 1022, 1089, 1167, 1788
BssMI GATC 8 cut(s) 93, 1015, 1318, 1354, 1829, 1914, 2293, 2440
BssNI GRCGYC 1 cut(s) 505
BssSI CACGAG 1 cut(s) 950
BssT1I CCWWGG 3 cut(s) 1022, 1167, 1788
Bst2BI CACGAG 1 cut(s) 950
Bst2UI CCWGG 5 cut(s) 483, 1091, 1187, 1725, 1851
Bst4CI ACNGT 6 cut(s) 384, 397, 786, 929, 1176, 2188
Bst6I CTCTTC 3 cut(s) 1062, 1607, 2018
BstACI GRCGYC 1 cut(s) 505
BstAFI CTTAAG 1 cut(s) 1010
BstBAI YACGTR 7 cut(s) 461, 658, 2313, 2343, 2367, 2391, 2403
BstC8I GCNNGC 2 cut(s) 39, 716
BstDEI CTNAG 7 cut(s) 851, 1066, 1314, 1760, 1803, 1911, 1989
BstDSI CCRYGG 1 cut(s) 1167
BstENI CCTNNNNNAGG 1 cut(s) 2135
BstF5I GGATG 8 cut(s) 143, 265, 340, 685, 1163, 1410, 1738, 1826
BstFNI CGCG 1 cut(s) 1325
BstHHI GCGC 1 cut(s) 696
BstKTI GATC 8 cut(s) 96, 1018, 1321, 1357, 1832, 1917, 2296, 2443
BstMAI GTCTC 1 cut(s) 1203
BstMBI GATC 8 cut(s) 93, 1015, 1318, 1354, 1829, 1914, 2293, 2440
BstMWI GCNNNNNNNGC 2 cut(s) 421, 1533
BstNI CCWGG 5 cut(s) 483, 1091, 1187, 1725, 1851
BstNSI RCATGY 1 cut(s) 41
BstSCI CCNGG 6 cut(s) 481, 1089, 1185, 1723, 1849, 1863
BstSFI CTRYAG 1 cut(s) 782
BstSLI GKGCMC 1 cut(s) 181
BstSNI TACGTA 6 cut(s) 658, 2313, 2343, 2367, 2391, 2403
BstUI CGCG 1 cut(s) 1325
BstV1I GCAGC 1 cut(s) 1674
BstV2I GAAGAC 1 cut(s) 678
BstX2I RGATCY 4 cut(s) 1015, 1318, 1354, 1829
BstYI RGATCY 4 cut(s) 1015, 1318, 1354, 1829
Bsu36I CCTNAGG 1 cut(s) 1314
BsuRI GGCC 3 cut(s) 1209, 1398, 1536
BtgI CCRYGG 1 cut(s) 1167
BtsCI GGATG 8 cut(s) 143, 265, 340, 685, 1163, 1410, 1738, 1826
BtsI GCAGTG 1 cut(s) 856
BtsIMutI CAGTG 6 cut(s) 179, 673, 856, 925, 1118, 1757
BtuMI TCGCGA 1 cut(s) 1325
Cac8I GCNNGC 2 cut(s) 39, 716
CaiI CAGNNNCTG 2 cut(s) 858, 1832
CciI TCATGA 1 cut(s) 1969
CfoI GCGC 1 cut(s) 696
Cfr13I GGNCC 1 cut(s) 1534
CseI GACGC 1 cut(s) 494
Csp6I GTAC 8 cut(s) 458, 527, 606, 659, 1172, 1773, 1890, 2016
CviQI GTAC 8 cut(s) 458, 527, 606, 659, 1172, 1773, 1890, 2016
DdeI CTNAG 7 cut(s) 851, 1066, 1314, 1760, 1803, 1911, 1989
DpnI GATC 8 cut(s) 95, 1017, 1320, 1356, 1831, 1916, 2295, 2442
DpnII GATC 8 cut(s) 93, 1015, 1318, 1354, 1829, 1914, 2293, 2440
DraI TTTAAA 1 cut(s) 1263
Eam1104I CTCTTC 3 cut(s) 1062, 1607, 2018
EarI CTCTTC 3 cut(s) 1062, 1607, 2018
Ecl136II GAGCTC 1 cut(s) 25
Eco105I TACGTA 6 cut(s) 658, 2313, 2343, 2367, 2391, 2403
Eco130I CCWWGG 3 cut(s) 1022, 1167, 1788
Eco24I GRGCYC 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 25
Eco57I CTGAAG 3 cut(s) 570, 2049, 2175
Eco81I CCTNAGG 1 cut(s) 1314
Eco88I CYCGRG 2 cut(s) 1529, 2297
EcoICRI GAGCTC 1 cut(s) 25
EcoNI CCTNNNNNAGG 1 cut(s) 2135
EcoO109I RGGNCCY 1 cut(s) 1534
EcoRI GAATTC 1 cut(s) 198
EcoRII CCWGG 5 cut(s) 481, 1089, 1185, 1723, 1849
EcoT14I CCWWGG 3 cut(s) 1022, 1167, 1788
EcoT22I ATGCAT 2 cut(s) 426, 1637
EcoT38I GRGCYC 1 cut(s) 27
ErhI CCWWGG 3 cut(s) 1022, 1167, 1788
FalI AAGNNNNNCTT 5 cut(s) 35, 1260, 1292, 2064, 2096
FaqI GGGAC 3 cut(s) 524, 1480, 1847
FauNDI CATATG 4 cut(s) 2326, 2356, 2380, 2416
FbaI TGATCA 1 cut(s) 93
Fnu4HI GCNGC 2 cut(s) 343, 1688
FokI GGATG 8 cut(s) 150, 272, 347, 672, 1150, 1417, 1745, 1833
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 2 cut(s) 343, 1688
FspBI CTAG 6 cut(s) 119, 560, 767, 905, 1496, 1769
GlaI GCGC 1 cut(s) 695
GluI GCNGC 2 cut(s) 343, 1688
GsuI CTGGAG 3 cut(s) 203, 564, 1112
HaeIII GGCC 3 cut(s) 1209, 1398, 1536
HapII CCGG 1 cut(s) 1865
HgaI GACGC 1 cut(s) 494
HhaI GCGC 1 cut(s) 696
Hin1I GRCGYC 1 cut(s) 505
Hin6I GCGC 1 cut(s) 694
HinP1I GCGC 1 cut(s) 694
HincII GTYRAC 1 cut(s) 1941
HindII GTYRAC 1 cut(s) 1941
HindIII AAGCTT 3 cut(s) 804, 1544, 2061
HpaII CCGG 1 cut(s) 1865
HphI GGTGA 4 cut(s) 1224, 1777, 2029, 2185
Hpy166II GTNNAC 3 cut(s) 179, 949, 1941
Hpy188I TCNGA 7 cut(s) 233, 368, 943, 1563, 1666, 1914, 2068
Hpy8I GTNNAC 3 cut(s) 179, 949, 1941
Hpy99I CGWCG 1 cut(s) 510
HpyAV CCTTC 5 cut(s) 147, 1391, 1485, 1589, 2042
HpyCH4III ACNGT 6 cut(s) 384, 397, 786, 929, 1176, 2188
HpyF10VI GCNNNNNNNGC 2 cut(s) 421, 1533
HpyF3I CTNAG 7 cut(s) 851, 1066, 1314, 1760, 1803, 1911, 1989
Hsp92I GRCGYC 1 cut(s) 505
HspAI GCGC 1 cut(s) 694
KpnI GGTACC 2 cut(s) 1776, 1893
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 8 cut(s) 93, 1015, 1318, 1354, 1829, 1914, 2293, 2440
LmnI GCTCC 3 cut(s) 156, 234, 545
Lsp1109I GCAGC 1 cut(s) 1674
LweI GCATC 6 cut(s) 411, 505, 1395, 1438, 1674, 1959
MaeI CTAG 6 cut(s) 119, 560, 767, 905, 1496, 1769
MalI GATC 8 cut(s) 95, 1017, 1320, 1356, 1831, 1916, 2295, 2442
MboI GATC 8 cut(s) 93, 1015, 1318, 1354, 1829, 1914, 2293, 2440
MfeI CAATTG 1 cut(s) 875
MflI RGATCY 4 cut(s) 1015, 1318, 1354, 1829
MhlI GDGCHC 2 cut(s) 27, 181
MlyI GAGTC 5 cut(s) 378, 962, 1462, 1745, 1936
MmeI TCCRAC 2 cut(s) 670, 1158
Mph1103I ATGCAT 2 cut(s) 426, 1637
MroXI GAANNNNTTC 4 cut(s) 273, 555, 1056, 1333
MslI CAYNNNNRTG 2 cut(s) 591, 861
MspCI CTTAAG 1 cut(s) 1010
MspI CCGG 1 cut(s) 1865
MspR9I CCNGG 6 cut(s) 483, 1091, 1187, 1725, 1851, 1865
MunI CAATTG 1 cut(s) 875
Mva1269I GAATGC 3 cut(s) 1627, 1637, 1770
MvaI CCWGG 5 cut(s) 483, 1091, 1187, 1725, 1851
MvnI CGCG 1 cut(s) 1325
MwoI GCNNNNNNNGC 2 cut(s) 421, 1533
NciI CCSGG 1 cut(s) 1865
NcoI CCATGG 1 cut(s) 1167
NdeI CATATG 4 cut(s) 2326, 2356, 2380, 2416
NdeII GATC 8 cut(s) 93, 1015, 1318, 1354, 1829, 1914, 2293, 2440
NlaIV GGNNCC 3 cut(s) 1774, 1874, 1891
NmuCI GTSAC 5 cut(s) 854, 1783, 2035, 2198, 2267
NruI TCGCGA 1 cut(s) 1325
NsiI ATGCAT 2 cut(s) 426, 1637
NspI RCATGY 1 cut(s) 41
PaeI GCATGC 1 cut(s) 41
PaeR7I CTCGAG 2 cut(s) 1529, 2297
PagI TCATGA 1 cut(s) 1969
PctI GAATGC 3 cut(s) 1627, 1637, 1770
PdmI GAANNNNTTC 4 cut(s) 273, 555, 1056, 1333
PfeI GAWTC 8 cut(s) 234, 467, 564, 841, 1190, 1229, 1552, 1650
PflFI GACNNNGTC 1 cut(s) 2132
PflMI CCANNNNNTGG 1 cut(s) 1463
PfoI TCCNGGA 2 cut(s) 1849, 1863
PkrI GCNGC 2 cut(s) 344, 1689
PleI GAGTC 5 cut(s) 377, 961, 1462, 1744, 1936
PpsI GAGTC 5 cut(s) 377, 961, 1462, 1744, 1936
Ppu21I YACGTR 7 cut(s) 461, 658, 2313, 2343, 2367, 2391, 2403
PshBI ATTAAT 1 cut(s) 2010
Psp124BI GAGCTC 1 cut(s) 27
Psp6I CCWGG 5 cut(s) 481, 1089, 1185, 1723, 1849
PspGI CCWGG 5 cut(s) 481, 1089, 1185, 1723, 1849
PspN4I GGNNCC 3 cut(s) 1774, 1874, 1891
PspPI GGNCC 1 cut(s) 1534
PspXI VCTCGAGB 1 cut(s) 1529
PstNI CAGNNNCTG 2 cut(s) 858, 1832
PsuI RGATCY 4 cut(s) 1015, 1318, 1354, 1829
PsyI GACNNNGTC 1 cut(s) 2132
RruI TCGCGA 1 cut(s) 1325
RsaI GTAC 8 cut(s) 459, 528, 607, 660, 1173, 1774, 1891, 2017
RsaNI GTAC 8 cut(s) 458, 527, 606, 659, 1172, 1773, 1890, 2016
RseI CAYNNNNRTG 2 cut(s) 591, 861
SacI GAGCTC 1 cut(s) 27
SatI GCNGC 2 cut(s) 343, 1688
Sau3AI GATC 8 cut(s) 93, 1015, 1318, 1354, 1829, 1914, 2293, 2440
Sau96I GGNCC 1 cut(s) 1534
SchI GAGTC 5 cut(s) 378, 962, 1462, 1745, 1936
ScrFI CCNGG 6 cut(s) 483, 1091, 1187, 1725, 1851, 1865
SduI GDGCHC 2 cut(s) 27, 181
SfaNI GCATC 6 cut(s) 411, 505, 1395, 1438, 1674, 1959
SfcI CTRYAG 1 cut(s) 782
Sfr274I CTCGAG 2 cut(s) 1529, 2297
SlaI CTCGAG 2 cut(s) 1529, 2297
SmiMI CAYNNNNRTG 2 cut(s) 591, 861
SmlI CTYRAG 6 cut(s) 20, 82, 1010, 1529, 1547, 2297
SmoI CTYRAG 6 cut(s) 20, 82, 1010, 1529, 1547, 2297
SnaBI TACGTA 6 cut(s) 658, 2313, 2343, 2367, 2391, 2403
SphI GCATGC 1 cut(s) 41
SsiI CCGC 2 cut(s) 342, 351
SspI AATATT 3 cut(s) 71, 273, 330
SspMI CTAG 6 cut(s) 119, 560, 767, 905, 1496, 1769
SstI GAGCTC 1 cut(s) 27
StyD4I CCNGG 6 cut(s) 481, 1089, 1185, 1723, 1849, 1863
StyI CCWWGG 3 cut(s) 1022, 1167, 1788
TaaI ACNGT 6 cut(s) 384, 397, 786, 929, 1176, 2188
TaqI TCGA 4 cut(s) 436, 1530, 2191, 2298
TatI WGTACW 2 cut(s) 526, 605
TauI GCSGC 1 cut(s) 345
TfiI GAWTC 8 cut(s) 234, 467, 564, 841, 1190, 1229, 1552, 1650
TscAI CASTG 6 cut(s) 186, 673, 863, 932, 1125, 1764
TseFI GTSAC 5 cut(s) 854, 1783, 2035, 2198, 2267
TseI GCWGC 1 cut(s) 1687
Tsp45I GTSAC 5 cut(s) 854, 1783, 2035, 2198, 2267
TspGWI ACGGA 1 cut(s) 548
TspRI CASTG 6 cut(s) 186, 673, 863, 932, 1125, 1764
Tth111I GACNNNGTC 1 cut(s) 2132
Van91I CCANNNNNTGG 1 cut(s) 1463
Vha464I CTTAAG 1 cut(s) 1010
VneI GTGCAC 1 cut(s) 177
VspI ATTAAT 1 cut(s) 2010
XagI CCTNNNNNAGG 1 cut(s) 2135
XapI RAATTY 8 cut(s) 198, 555, 988, 1079, 1508, 1657, 2030, 2225
XbaI TCTAGA 1 cut(s) 904
XceI RCATGY 1 cut(s) 41
XcmI CCANNNNNNNNNTGG 1 cut(s) 1174
XhoI CTCGAG 2 cut(s) 1529, 2297
XmnI GAANNNNTTC 4 cut(s) 273, 555, 1056, 1333
XspI CTAG 6 cut(s) 119, 560, 767, 905, 1496, 1769
Zsp2I ATGCAT 2 cut(s) 426, 1637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.