TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 31 - 204 | 1.4e-46 | TIR domain |
| TIR_2 | PF13676 | 33 - 130 | 2.7e-14 | TIR domain |
| NB-ARC | PF00931 | 230 - 387 | 7.6e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 455 - 526 | 1.5e-16 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 695 - 767 | 2.8e-06 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 1046, 2243, 2384 |
| AatII | GACGTC | 1 cut(s) | 89 |
| Acc36I | ACCTGC | 2 cut(s) | 346, 1896 |
| AccB1I | GGYRCC | 1 cut(s) | 34 |
| AccBSI | CCGCTC | 1 cut(s) | 515 |
| AccI | GTMKAC | 1 cut(s) | 627 |
| AccII | CGCG | 1 cut(s) | 290 |
| AccIII | TCCGGA | 1 cut(s) | 2128 |
| AciI | CCGC | 8 cut(s) | 29, 224, 290, 515, 893, 1891, 1930, 2481 |
| AclI | AACGTT | 1 cut(s) | 1489 |
| AclWI | GGATC | 2 cut(s) | 266, 377 |
| AcsI | RAATTY | 8 cut(s) | 520, 616, 711, 767, 1308, 1323, 1681, 2194 |
| AcuI | CTGAAG | 5 cut(s) | 94, 1123, 1313, 1677, 1686 |
| AcyI | GRCGYC | 1 cut(s) | 86 |
| AfaI | GTAC | 8 cut(s) | 287, 475, 954, 1714, 1767, 1895, 1908, 2268 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 2131 |
| AflIII | ACRYGT | 2 cut(s) | 96, 391 |
| AgsI | TTSAA | 4 cut(s) | 616, 1157, 1238, 2230 |
| AjiI | CACGTC | 1 cut(s) | 97 |
| AjnI | CCWGG | 3 cut(s) | 488, 1872, 1925 |
| Alw21I | GWGCWC | 1 cut(s) | 1137 |
| Alw26I | GTCTC | 6 cut(s) | 809, 1539, 1655, 1732, 1773, 2342 |
| AlwI | GGATC | 2 cut(s) | 266, 377 |
| Aor13HI | TCCGGA | 1 cut(s) | 2128 |
| AoxI | GGCC | 2 cut(s) | 50, 2320 |
| ApeKI | GCWGC | 6 cut(s) | 155, 352, 500, 2106, 2365, 2422 |
| ApoI | RAATTY | 8 cut(s) | 520, 616, 711, 767, 1308, 1323, 1681, 2194 |
| AseI | ATTAAT | 1 cut(s) | 233 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 858, 1308, 1379, 1563 |
| AspA2I | CCTAGG | 1 cut(s) | 2360 |
| AspLEI | GCGC | 2 cut(s) | 1587, 2422 |
| AspS9I | GGNCC | 5 cut(s) | 50, 132, 985, 1025, 2122 |
| AsuC2I | CCSGG | 1 cut(s) | 1029 |
| AsuHPI | GGTGA | 3 cut(s) | 128, 911, 1977 |
| AvaII | GGWCC | 4 cut(s) | 132, 985, 1025, 2122 |
| AvrII | CCTAGG | 1 cut(s) | 2360 |
| BanI | GGYRCC | 1 cut(s) | 34 |
| BanII | GRGCYC | 1 cut(s) | 1137 |
| BauI | CACGAG | 1 cut(s) | 648 |
| BbsI | GAAGAC | 3 cut(s) | 126, 265, 1626 |
| Bbv12I | GWGCWC | 1 cut(s) | 1137 |
| BbvI | GCAGC | 6 cut(s) | 167, 364, 487, 2093, 2352, 2409 |
| BccI | CCATC | 9 cut(s) | 46, 52, 64, 201, 294, 764, 1310, 2278, 2406 |
| BceAI | ACGGC | 1 cut(s) | 996 |
| BciT130I | CCWGG | 3 cut(s) | 490, 1874, 1927 |
| BciVI | GTATCC | 1 cut(s) | 1081 |
| BcnI | CCSGG | 1 cut(s) | 1029 |
| BcoDI | GTCTC | 6 cut(s) | 809, 1539, 1655, 1732, 1773, 2342 |
| BfaI | CTAG | 5 cut(s) | 161, 800, 1070, 1100, 2361 |
| BfmI | CTRYAG | 3 cut(s) | 2012, 2277, 2423 |
| BfoI | RGCGCY | 2 cut(s) | 1588, 2423 |
| BfuAI | ACCTGC | 2 cut(s) | 346, 1896 |
| BfuI | GTATCC | 1 cut(s) | 1081 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 49 |
| BglII | AGATCT | 2 cut(s) | 1691, 2432 |
| BlnI | CCTAGG | 1 cut(s) | 2360 |
| BlpI | GCTNAGC | 1 cut(s) | 1805 |
| Bme1390I | CCNGG | 4 cut(s) | 490, 1029, 1874, 1927 |
| Bme18I | GGWCC | 4 cut(s) | 132, 985, 1025, 2122 |
| BmgBI | CACGTC | 1 cut(s) | 97 |
| BmgT120I | GGNCC | 5 cut(s) | 50, 132, 985, 1025, 2122 |
| BmiI | GGNNCC | 3 cut(s) | 36, 51, 2443 |
| BmrFI | CCNGG | 4 cut(s) | 490, 1029, 1874, 1927 |
| BmrI | ACTGGG | 1 cut(s) | 626 |
| BmsI | GCATC | 6 cut(s) | 17, 181, 1342, 1518, 1621, 2265 |
| BmuI | ACTGGG | 1 cut(s) | 626 |
| BpiI | GAAGAC | 3 cut(s) | 126, 265, 1626 |
| BpmI | CTGGAG | 2 cut(s) | 329, 1797 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1805 |
| BpuEI | CTTGAG | 5 cut(s) | 124, 1089, 1151, 1177, 2102 |
| BpuMI | CCSGG | 1 cut(s) | 1029 |
| BsaBI | GATNNNNATC | 1 cut(s) | 975 |
| BsaHI | GRCGYC | 1 cut(s) | 86 |
| BsaJI | CCNNGG | 3 cut(s) | 62, 195, 2360 |
| BsaWI | WCCGGW | 2 cut(s) | 81, 2128 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 2131 |
| Bse118I | RCCGGY | 1 cut(s) | 31 |
| Bse1I | ACTGG | 5 cut(s) | 408, 632, 1233, 1780, 2076 |
| Bse8I | GATNNNNATC | 1 cut(s) | 975 |
| BseAI | TCCGGA | 1 cut(s) | 2128 |
| BseBI | CCWGG | 3 cut(s) | 490, 1874, 1927 |
| BseDI | CCNNGG | 3 cut(s) | 62, 195, 2360 |
| BseGI | GGATG | 5 cut(s) | 17, 56, 196, 1648, 2270 |
| BseJI | GATNNNNATC | 1 cut(s) | 975 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 2131 |
| BseMII | CTCAG | 6 cut(s) | 291, 468, 520, 1351, 1972, 2315 |
| BseNI | ACTGG | 5 cut(s) | 408, 632, 1233, 1780, 2076 |
| BseRI | GAGGAG | 2 cut(s) | 326, 525 |
| BseXI | GCAGC | 6 cut(s) | 167, 364, 487, 2093, 2352, 2409 |
| BsgI | GTGCAG | 3 cut(s) | 341, 1818, 2092 |
| Bsh1236I | CGCG | 1 cut(s) | 290 |
| BshFI | GGCC | 2 cut(s) | 52, 2322 |
| BshNI | GGYRCC | 1 cut(s) | 34 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1137 |
| BsiSI | CCGG | 5 cut(s) | 32, 82, 171, 1028, 2129 |
| BsiWI | CGTACG | 1 cut(s) | 1906 |
| BslFI | GGGAC | 1 cut(s) | 213 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 2131 |
| BsmAI | GTCTC | 6 cut(s) | 809, 1539, 1655, 1732, 1773, 2342 |
| BsmFI | GGGAC | 1 cut(s) | 213 |
| BsnI | GGCC | 2 cut(s) | 52, 2322 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1137 |
| Bsp13I | TCCGGA | 1 cut(s) | 2128 |
| Bsp1407I | TGTACA | 1 cut(s) | 1765 |
| Bsp143I | GATC | 8 cut(s) | 163, 258, 324, 382, 976, 1057, 1691, 2432 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1805 |
| BspACI | CCGC | 8 cut(s) | 29, 224, 290, 515, 893, 1891, 1930, 2481 |
| BspANI | GGCC | 2 cut(s) | 52, 2322 |
| BspCNI | CTCAG | 6 cut(s) | 290, 467, 519, 1350, 1971, 2316 |
| BspEI | TCCGGA | 1 cut(s) | 2128 |
| BspFNI | CGCG | 1 cut(s) | 290 |
| BspHI | TCATGA | 2 cut(s) | 979, 1524 |
| BspLI | GGNNCC | 3 cut(s) | 36, 51, 2443 |
| BspMAI | CTGCAG | 1 cut(s) | 2427 |
| BspMI | ACCTGC | 2 cut(s) | 346, 1896 |
| BspPI | GGATC | 2 cut(s) | 266, 377 |
| BspQI | GCTCTTC | 1 cut(s) | 1142 |
| BspT107I | GGYRCC | 1 cut(s) | 34 |
| BsrBI | CCGCTC | 1 cut(s) | 515 |
| BsrFI | RCCGGY | 1 cut(s) | 31 |
| BsrGI | TGTACA | 1 cut(s) | 1765 |
| BsrI | ACTGG | 5 cut(s) | 408, 632, 1233, 1780, 2076 |
| BssAI | RCCGGY | 1 cut(s) | 31 |
| BssECI | CCNNGG | 3 cut(s) | 62, 195, 2360 |
| BssMI | GATC | 8 cut(s) | 163, 258, 324, 382, 976, 1057, 1691, 2432 |
| BssNI | GRCGYC | 1 cut(s) | 86 |
| BssSI | CACGAG | 1 cut(s) | 648 |
| BssT1I | CCWWGG | 2 cut(s) | 62, 2360 |
| Bst2BI | CACGAG | 1 cut(s) | 648 |
| Bst2UI | CCWGG | 3 cut(s) | 490, 1874, 1927 |
| Bst4CI | ACNGT | 7 cut(s) | 745, 788, 1214, 1504, 1630, 2016, 2036 |
| Bst6I | CTCTTC | 6 cut(s) | 1142, 1170, 1192, 1653, 1730, 2482 |
| BstACI | GRCGYC | 1 cut(s) | 86 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1537 |
| BstAUI | TGTACA | 1 cut(s) | 1765 |
| BstC8I | GCNNGC | 5 cut(s) | 6, 996, 1149, 1811, 1820 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2129 |
| BstF5I | GGATG | 5 cut(s) | 17, 56, 196, 1648, 2270 |
| BstFNI | CGCG | 1 cut(s) | 290 |
| BstH2I | RGCGCY | 2 cut(s) | 1588, 2423 |
| BstHHI | GCGC | 2 cut(s) | 1587, 2422 |
| BstKTI | GATC | 8 cut(s) | 166, 261, 327, 385, 979, 1060, 1694, 2435 |
| BstMAI | GTCTC | 6 cut(s) | 809, 1539, 1655, 1732, 1773, 2342 |
| BstMBI | GATC | 8 cut(s) | 163, 258, 324, 382, 976, 1057, 1691, 2432 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 34, 49, 1528, 1537, 1810, 1815, 1819 |
| BstNI | CCWGG | 3 cut(s) | 490, 1874, 1927 |
| BstNSI | RCATGY | 4 cut(s) | 395, 451, 998, 1151 |
| BstSCI | CCNGG | 4 cut(s) | 488, 1027, 1872, 1925 |
| BstSFI | CTRYAG | 3 cut(s) | 2012, 2277, 2423 |
| BstUI | CGCG | 1 cut(s) | 290 |
| BstV1I | GCAGC | 6 cut(s) | 167, 364, 487, 2093, 2352, 2409 |
| BstV2I | GAAGAC | 3 cut(s) | 126, 265, 1626 |
| BstX2I | RGATCY | 3 cut(s) | 258, 1691, 2432 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 63, 2071, 2452 |
| BstYI | RGATCY | 3 cut(s) | 258, 1691, 2432 |
| BsuI | GTATCC | 1 cut(s) | 1081 |
| BsuRI | GGCC | 2 cut(s) | 52, 2322 |
| BtgZI | GCGATG | 2 cut(s) | 9, 24 |
| BtrI | CACGTC | 1 cut(s) | 97 |
| BtsCI | GGATG | 5 cut(s) | 17, 56, 196, 1648, 2270 |
| BtsIMutI | CAGTG | 5 cut(s) | 1226, 1289, 1480, 1773, 2266 |
| BveI | ACCTGC | 2 cut(s) | 346, 1896 |
| Cac8I | GCNNGC | 5 cut(s) | 6, 996, 1149, 1811, 1820 |
| CciI | TCATGA | 2 cut(s) | 979, 1524 |
| CfoI | GCGC | 2 cut(s) | 1587, 2422 |
| Cfr10I | RCCGGY | 1 cut(s) | 31 |
| Cfr13I | GGNCC | 5 cut(s) | 50, 132, 985, 1025, 2122 |
| CseI | GACGC | 1 cut(s) | 2465 |
| CsiI | ACCWGGT | 1 cut(s) | 1872 |
| Csp6I | GTAC | 8 cut(s) | 286, 474, 953, 1713, 1766, 1894, 1907, 2267 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1182, 1217 |
| CviQI | GTAC | 8 cut(s) | 286, 474, 953, 1713, 1766, 1894, 1907, 2267 |
| DpnI | GATC | 8 cut(s) | 165, 260, 326, 384, 978, 1059, 1693, 2434 |
| DpnII | GATC | 8 cut(s) | 163, 258, 324, 382, 976, 1057, 1691, 2432 |
| Eam1104I | CTCTTC | 6 cut(s) | 1142, 1170, 1192, 1653, 1730, 2482 |
| EarI | CTCTTC | 6 cut(s) | 1142, 1170, 1192, 1653, 1730, 2482 |
| Ecl136II | GAGCTC | 1 cut(s) | 1135 |
| Eco130I | CCWWGG | 2 cut(s) | 62, 2360 |
| Eco147I | AGGCCT | 1 cut(s) | 2322 |
| Eco24I | GRGCYC | 1 cut(s) | 1137 |
| Eco47I | GGWCC | 4 cut(s) | 132, 985, 1025, 2122 |
| Eco53kI | GAGCTC | 1 cut(s) | 1135 |
| Eco57I | CTGAAG | 5 cut(s) | 94, 1123, 1313, 1677, 1686 |
| EcoICRI | GAGCTC | 1 cut(s) | 1135 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2129 |
| EcoO109I | RGGNCCY | 2 cut(s) | 132, 2122 |
| EcoRI | GAATTC | 1 cut(s) | 1323 |
| EcoRII | CCWGG | 3 cut(s) | 488, 1872, 1925 |
| EcoT14I | CCWWGG | 2 cut(s) | 62, 2360 |
| EcoT22I | ATGCAT | 2 cut(s) | 1000, 1533 |
| EcoT38I | GRGCYC | 1 cut(s) | 1137 |
| ErhI | CCWWGG | 2 cut(s) | 62, 2360 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 843, 875, 921, 953, 1113, 1145 |
| FaqI | GGGAC | 1 cut(s) | 213 |
| FblI | GTMKAC | 1 cut(s) | 627 |
| FokI | GGATG | 5 cut(s) | 4, 43, 203, 1655, 2257 |
| FriOI | GRGCYC | 1 cut(s) | 1137 |
| FspBI | CTAG | 5 cut(s) | 161, 800, 1070, 1100, 2361 |
| GlaI | GCGC | 2 cut(s) | 1586, 2421 |
| GsuI | CTGGAG | 2 cut(s) | 329, 1797 |
| HaeII | RGCGCY | 2 cut(s) | 1588, 2423 |
| HaeIII | GGCC | 2 cut(s) | 52, 2322 |
| HapII | CCGG | 5 cut(s) | 32, 82, 171, 1028, 2129 |
| HgaI | GACGC | 1 cut(s) | 2465 |
| HhaI | GCGC | 2 cut(s) | 1587, 2422 |
| Hin1I | GRCGYC | 1 cut(s) | 86 |
| Hin6I | GCGC | 2 cut(s) | 1585, 2420 |
| HinP1I | GCGC | 2 cut(s) | 1585, 2420 |
| HincII | GTYRAC | 1 cut(s) | 580 |
| HindII | GTYRAC | 1 cut(s) | 580 |
| HindIII | AAGCTT | 2 cut(s) | 1345, 2386 |
| HpaII | CCGG | 5 cut(s) | 32, 82, 171, 1028, 2129 |
| HphI | GGTGA | 3 cut(s) | 128, 911, 1977 |
| Hpy166II | GTNNAC | 5 cut(s) | 580, 628, 1223, 2294, 2330 |
| Hpy8I | GTNNAC | 5 cut(s) | 580, 628, 1223, 2294, 2330 |
| Hpy99I | CGWCG | 1 cut(s) | 98 |
| HpyCH4III | ACNGT | 7 cut(s) | 745, 788, 1214, 1504, 1630, 2016, 2036 |
| HpyCH4IV | ACGT | 7 cut(s) | 86, 96, 182, 1425, 1489, 1597, 1623 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 34, 49, 1528, 1537, 1810, 1815, 1819 |
| HpySE526I | ACGT | 7 cut(s) | 86, 96, 182, 1425, 1489, 1597, 1623 |
| Hsp92I | GRCGYC | 1 cut(s) | 86 |
| HspAI | GCGC | 2 cut(s) | 1585, 2420 |
| Kpn2I | TCCGGA | 1 cut(s) | 2128 |
| Kzo9I | GATC | 8 cut(s) | 163, 258, 324, 382, 976, 1057, 1691, 2432 |
| LguI | GCTCTTC | 1 cut(s) | 1142 |
| LmnI | GCTCC | 6 cut(s) | 313, 512, 1266, 1488, 1755, 2441 |
| Lsp1109I | GCAGC | 6 cut(s) | 167, 364, 487, 2093, 2352, 2409 |
| LweI | GCATC | 6 cut(s) | 17, 181, 1342, 1518, 1621, 2265 |
| MabI | ACCWGGT | 1 cut(s) | 1872 |
| MaeI | CTAG | 5 cut(s) | 161, 800, 1070, 1100, 2361 |
| MaeII | ACGT | 7 cut(s) | 86, 96, 182, 1425, 1489, 1597, 1623 |
| MaeIII | GTNAC | 4 cut(s) | 178, 1498, 1624, 2491 |
| MalI | GATC | 8 cut(s) | 165, 260, 326, 384, 978, 1059, 1693, 2434 |
| MbiI | CCGCTC | 1 cut(s) | 515 |
| MboI | GATC | 8 cut(s) | 163, 258, 324, 382, 976, 1057, 1691, 2432 |
| MfeI | CAATTG | 2 cut(s) | 989, 1356 |
| MflI | RGATCY | 3 cut(s) | 258, 1691, 2432 |
| MhlI | GDGCHC | 1 cut(s) | 1137 |
| MlyI | GAGTC | 5 cut(s) | 183, 821, 1665, 2155, 2289 |
| MmeI | TCCRAC | 5 cut(s) | 661, 688, 1510, 1777, 2419 |
| Mph1103I | ATGCAT | 2 cut(s) | 1000, 1533 |
| MroI | TCCGGA | 1 cut(s) | 2128 |
| MroXI | GAANNNNTTC | 4 cut(s) | 858, 1308, 1379, 1563 |
| MseI | TTAA | 8 cut(s) | 233, 875, 1860, 1953, 2021, 2028, 2100, 2393 |
| MslI | CAYNNNNRTG | 2 cut(s) | 648, 1409 |
| MspA1I | CMGCKG | 1 cut(s) | 598 |
| MspI | CCGG | 5 cut(s) | 32, 82, 171, 1028, 2129 |
| MspR9I | CCNGG | 4 cut(s) | 490, 1029, 1874, 1927 |
| MunI | CAATTG | 2 cut(s) | 989, 1356 |
| MvaI | CCWGG | 3 cut(s) | 490, 1874, 1927 |
| MvnI | CGCG | 1 cut(s) | 290 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 34, 49, 1528, 1537, 1810, 1815, 1819 |
| NciI | CCSGG | 1 cut(s) | 1029 |
| NdeII | GATC | 8 cut(s) | 163, 258, 324, 382, 976, 1057, 1691, 2432 |
| NlaIV | GGNNCC | 3 cut(s) | 36, 51, 2443 |
| NmeAIII | GCCGAG | 1 cut(s) | 220 |
| NmuCI | GTSAC | 1 cut(s) | 178 |
| NsiI | ATGCAT | 2 cut(s) | 1000, 1533 |
| NspI | RCATGY | 4 cut(s) | 395, 451, 998, 1151 |
| PaeI | GCATGC | 2 cut(s) | 998, 1151 |
| PagI | TCATGA | 2 cut(s) | 979, 1524 |
| PceI | AGGCCT | 1 cut(s) | 2322 |
| PciI | ACATGT | 1 cut(s) | 391 |
| PciSI | GCTCTTC | 1 cut(s) | 1142 |
| PdmI | GAANNNNTTC | 4 cut(s) | 858, 1308, 1379, 1563 |
| PfeI | GAWTC | 6 cut(s) | 293, 729, 1016, 1574, 1646, 1827 |
| Pfl23II | CGTACG | 1 cut(s) | 1906 |
| PfoI | TCCNGGA | 1 cut(s) | 1027 |
| PleI | GAGTC | 5 cut(s) | 182, 821, 1665, 2155, 2289 |
| PpsI | GAGTC | 5 cut(s) | 182, 821, 1665, 2155, 2289 |
| PpuMI | RGGWCCY | 2 cut(s) | 132, 2122 |
| PscI | ACATGT | 1 cut(s) | 391 |
| PshBI | ATTAAT | 1 cut(s) | 233 |
| PsiI | TTATAA | 3 cut(s) | 1046, 2243, 2384 |
| Psp124BI | GAGCTC | 1 cut(s) | 1137 |
| Psp1406I | AACGTT | 1 cut(s) | 1489 |
| Psp5II | RGGWCCY | 2 cut(s) | 132, 2122 |
| Psp6I | CCWGG | 3 cut(s) | 488, 1872, 1925 |
| PspGI | CCWGG | 3 cut(s) | 488, 1872, 1925 |
| PspLI | CGTACG | 1 cut(s) | 1906 |
| PspN4I | GGNNCC | 3 cut(s) | 36, 51, 2443 |
| PspPI | GGNCC | 5 cut(s) | 50, 132, 985, 1025, 2122 |
| PspPPI | RGGWCCY | 2 cut(s) | 132, 2122 |
| PstI | CTGCAG | 1 cut(s) | 2427 |
| PsuI | RGATCY | 3 cut(s) | 258, 1691, 2432 |
| PvuII | CAGCTG | 1 cut(s) | 598 |
| RsaI | GTAC | 8 cut(s) | 287, 475, 954, 1714, 1767, 1895, 1908, 2268 |
| RsaNI | GTAC | 8 cut(s) | 286, 474, 953, 1713, 1766, 1894, 1907, 2267 |
| RseI | CAYNNNNRTG | 2 cut(s) | 648, 1409 |
| SacI | GAGCTC | 1 cut(s) | 1137 |
| SapI | GCTCTTC | 1 cut(s) | 1142 |
| SaqAI | TTAA | 8 cut(s) | 233, 875, 1860, 1953, 2021, 2028, 2100, 2393 |
| Sau3AI | GATC | 8 cut(s) | 163, 258, 324, 382, 976, 1057, 1691, 2432 |
| Sau96I | GGNCC | 5 cut(s) | 50, 132, 985, 1025, 2122 |
| SchI | GAGTC | 5 cut(s) | 183, 821, 1665, 2155, 2289 |
| ScrFI | CCNGG | 4 cut(s) | 490, 1029, 1874, 1927 |
| SduI | GDGCHC | 1 cut(s) | 1137 |
| SexAI | ACCWGGT | 1 cut(s) | 1872 |
| SfaNI | GCATC | 6 cut(s) | 17, 181, 1342, 1518, 1621, 2265 |
| SfcI | CTRYAG | 3 cut(s) | 2012, 2277, 2423 |
| SgrAI | CRCCGGYG | 1 cut(s) | 31 |
| SinI | GGWCC | 4 cut(s) | 132, 985, 1025, 2122 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 648, 1409 |
| SmlI | CTYRAG | 5 cut(s) | 103, 1104, 1130, 1192, 2117 |
| SmoI | CTYRAG | 5 cut(s) | 103, 1104, 1130, 1192, 2117 |
| SphI | GCATGC | 2 cut(s) | 998, 1151 |
| SseBI | AGGCCT | 1 cut(s) | 2322 |
| SsiI | CCGC | 8 cut(s) | 29, 224, 290, 515, 893, 1891, 1930, 2481 |
| SspI | AATATT | 1 cut(s) | 1162 |
| SspMI | CTAG | 5 cut(s) | 161, 800, 1070, 1100, 2361 |
| SstI | GAGCTC | 1 cut(s) | 1137 |
| StuI | AGGCCT | 1 cut(s) | 2322 |
| StyD4I | CCNGG | 4 cut(s) | 488, 1027, 1872, 1925 |
| StyI | CCWWGG | 2 cut(s) | 62, 2360 |
| TaaI | ACNGT | 7 cut(s) | 745, 788, 1214, 1504, 1630, 2016, 2036 |
| TaiI | ACGT | 7 cut(s) | 89, 99, 185, 1428, 1492, 1600, 1626 |
| TaqI | TCGA | 9 cut(s) | 246, 296, 534, 1060, 1185, 1543, 1884, 2183, 2314 |
| TatI | WGTACW | 2 cut(s) | 1712, 1765 |
| TauI | GCSGC | 4 cut(s) | 31, 518, 1933, 2483 |
| TfiI | GAWTC | 6 cut(s) | 293, 729, 1016, 1574, 1646, 1827 |
| Tru1I | TTAA | 8 cut(s) | 233, 875, 1860, 1953, 2021, 2028, 2100, 2393 |
| Tru9I | TTAA | 8 cut(s) | 233, 875, 1860, 1953, 2021, 2028, 2100, 2393 |
| TscAI | CASTG | 5 cut(s) | 1233, 1296, 1480, 1780, 2266 |
| TseFI | GTSAC | 1 cut(s) | 178 |
| TseI | GCWGC | 6 cut(s) | 155, 352, 500, 2106, 2365, 2422 |
| Tsp45I | GTSAC | 1 cut(s) | 178 |
| TspGWI | ACGGA | 1 cut(s) | 1655 |
| TspRI | CASTG | 5 cut(s) | 1233, 1296, 1480, 1780, 2266 |
| VpaK11BI | GGWCC | 4 cut(s) | 132, 985, 1025, 2122 |
| VspI | ATTAAT | 1 cut(s) | 233 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2129 |
| XapI | RAATTY | 8 cut(s) | 520, 616, 711, 767, 1308, 1323, 1681, 2194 |
| XceI | RCATGY | 4 cut(s) | 395, 451, 998, 1151 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 60 |
| XmaJI | CCTAGG | 1 cut(s) | 2360 |
| XmiI | GTMKAC | 1 cut(s) | 627 |
| XmnI | GAANNNNTTC | 4 cut(s) | 858, 1308, 1379, 1563 |
| XspI | CTAG | 5 cut(s) | 161, 800, 1070, 1100, 2361 |
| ZraI | GACGTC | 1 cut(s) | 87 |
| Zsp2I | ATGCAT | 2 cut(s) | 1000, 1533 |