TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 21 - 192 | 5.2e-51 | TIR domain |
| TIR_2 | PF13676 | 23 - 119 | 5.7e-17 | TIR domain |
| NB-ARC | PF00931 | 206 - 371 | 1.8e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 441 - 507 | 1.1e-18 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 644 - 774 | 1.5e-08 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 771 - 828 | 6.5e-08 | Leucine rich repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 726 |
| AatII | GACGTC | 1 cut(s) | 2177 |
| AbsI | CCTCGAGG | 1 cut(s) | 278 |
| Acc65I | GGTACC | 1 cut(s) | 2795 |
| AccB1I | GGYRCC | 2 cut(s) | 273, 2795 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3951 |
| AccI | GTMKAC | 4 cut(s) | 924, 2380, 2582, 3519 |
| AccII | CGCG | 2 cut(s) | 945, 3621 |
| AclI | AACGTT | 1 cut(s) | 2515 |
| AclWI | GGATC | 7 cut(s) | 347, 498, 1071, 1204, 2754, 3527, 3754 |
| AcoI | YGGCCR | 1 cut(s) | 2205 |
| AcuI | CTGAAG | 4 cut(s) | 64, 486, 1590, 2022 |
| AcyI | GRCGYC | 3 cut(s) | 1564, 2174, 2883 |
| AfeI | AGCGCT | 1 cut(s) | 2255 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 510, 876, 2533, 2701, 2998, 3464, 3465, 3917, 3951 |
| AflII | CTTAAG | 3 cut(s) | 2069, 2326, 2699 |
| AflIII | ACRYGT | 3 cut(s) | 95, 1012, 3698 |
| AhlI | ACTAGT | 2 cut(s) | 1655, 2945 |
| AjnI | CCWGG | 5 cut(s) | 976, 1540, 2526, 2623, 3593 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3011, 3043 |
| Alw21I | GWGCWC | 4 cut(s) | 1086, 1140, 2160, 2526 |
| Alw26I | GTCTC | 5 cut(s) | 1646, 1684, 2809, 3440, 3846 |
| AlwI | GGATC | 7 cut(s) | 347, 498, 1071, 1204, 2754, 3527, 3754 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3951 |
| Ama87I | CYCGRG | 6 cut(s) | 278, 612, 2080, 2249, 2647, 3626 |
| Aor51HI | AGCGCT | 1 cut(s) | 2255 |
| ApaI | GGGCCC | 1 cut(s) | 3181 |
| ApeKI | GCWGC | 7 cut(s) | 857, 937, 1848, 2394, 3589, 3607, 3973 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 3371, 3403, 3989, 4021 |
| AseI | ATTAAT | 1 cut(s) | 2928 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 885 |
| Asp718I | GGTACC | 1 cut(s) | 2795 |
| AspLEI | GCGC | 3 cut(s) | 589, 2256, 3621 |
| AsuHPI | GGTGA | 3 cut(s) | 2056, 2420, 3341 |
| AsuII | TTCGAA | 2 cut(s) | 473, 1949 |
| AvaI | CYCGRG | 6 cut(s) | 278, 612, 2080, 2249, 2647, 3626 |
| AvaII | GGWCC | 6 cut(s) | 864, 1429, 3058, 3280, 3319, 3597 |
| AxyI | CCTNAGG | 1 cut(s) | 2820 |
| BaeGI | GKGCMC | 1 cut(s) | 3181 |
| BaeI | ACNNNNGTAYC | 8 cut(s) | 1726, 1759, 2779, 2787, 2812, 2820, 3135, 3168 |
| BanI | GGYRCC | 2 cut(s) | 273, 2795 |
| BanII | GRGCYC | 3 cut(s) | 1086, 3181, 3416 |
| BauI | CACGAG | 3 cut(s) | 1263, 3813, 3858 |
| BbsI | GAAGAC | 5 cut(s) | 96, 235, 2764, 3504, 3562 |
| Bbv12I | GWGCWC | 4 cut(s) | 1086, 1140, 2160, 2526 |
| BbvI | GCAGC | 7 cut(s) | 844, 949, 1860, 2406, 3601, 3619, 3985 |
| BceAI | ACGGC | 3 cut(s) | 1318, 2220, 3551 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1495, 1529, 2528, 2562 |
| BciT130I | CCWGG | 5 cut(s) | 978, 1542, 2528, 2625, 3595 |
| BciVI | GTATCC | 1 cut(s) | 1727 |
| BcoDI | GTCTC | 5 cut(s) | 1646, 1684, 2809, 3440, 3846 |
| BcuI | ACTAGT | 2 cut(s) | 1655, 2945 |
| BfmI | CTRYAG | 2 cut(s) | 858, 2714 |
| BfoI | RGCGCY | 2 cut(s) | 590, 2257 |
| BfrI | CTTAAG | 3 cut(s) | 2069, 2326, 2699 |
| BfuI | GTATCC | 1 cut(s) | 1727 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2442 |
| BglII | AGATCT | 2 cut(s) | 228, 2023 |
| BmcAI | AGTACT | 1 cut(s) | 1666 |
| Bme1390I | CCNGG | 5 cut(s) | 978, 1542, 2528, 2625, 3595 |
| Bme18I | GGWCC | 6 cut(s) | 864, 1429, 3058, 3280, 3319, 3597 |
| BmeT110I | CYCGRG | 6 cut(s) | 278, 612, 2080, 2249, 2647, 3626 |
| BmiI | GGNNCC | 8 cut(s) | 275, 865, 2426, 2602, 2797, 2977, 3179, 3415 |
| BmrFI | CCNGG | 5 cut(s) | 978, 1542, 2528, 2625, 3595 |
| BmrI | ACTGGG | 2 cut(s) | 2249, 4013 |
| BmsI | GCATC | 6 cut(s) | 651, 1470, 3107, 3322, 3606, 3698 |
| BmuI | ACTGGG | 2 cut(s) | 2249, 4013 |
| BpiI | GAAGAC | 5 cut(s) | 96, 235, 2764, 3504, 3562 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 442, 474 |
| BpmI | CTGGAG | 3 cut(s) | 250, 1249, 1563 |
| Bpu14I | TTCGAA | 2 cut(s) | 473, 1949 |
| BpuEI | CTTGAG | 5 cut(s) | 1100, 1985, 2012, 3569, 3900 |
| BsaAI | YACGTR | 2 cut(s) | 98, 2590 |
| BsaBI | GATNNNNATC | 1 cut(s) | 233 |
| BsaHI | GRCGYC | 3 cut(s) | 1564, 2174, 2883 |
| BsaI | GGTCTC | 2 cut(s) | 3440, 3846 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 510, 876, 2533, 2701, 2998, 3464, 3465, 3917, 3951 |
| Bse118I | RCCGGY | 1 cut(s) | 3514 |
| Bse1I | ACTGG | 3 cut(s) | 1232, 2244, 4019 |
| Bse21I | CCTNAGG | 1 cut(s) | 2820 |
| Bse8I | GATNNNNATC | 1 cut(s) | 233 |
| BseBI | CCWGG | 5 cut(s) | 978, 1542, 2528, 2625, 3595 |
| BseJI | GATNNNNATC | 1 cut(s) | 233 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 510, 876, 2533, 2701, 2998, 3464, 3465, 3917, 3951 |
| BseMII | CTCAG | 9 cut(s) | 508, 1659, 1685, 1924, 2145, 2452, 3015, 3435, 3768 |
| BseNI | ACTGG | 3 cut(s) | 1232, 2244, 4019 |
| BseSI | GKGCMC | 1 cut(s) | 3181 |
| BseXI | GCAGC | 7 cut(s) | 844, 949, 1860, 2406, 3601, 3619, 3985 |
| BseYI | CCCAGC | 4 cut(s) | 316, 486, 1727, 2998 |
| BsgI | GTGCAG | 1 cut(s) | 3804 |
| Bsh1236I | CGCG | 2 cut(s) | 945, 3621 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3519 |
| BshNI | GGYRCC | 2 cut(s) | 273, 2795 |
| BsiEI | CGRYCG | 1 cut(s) | 3519 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1086, 1140, 2160, 2526 |
| BsiHKCI | CYCGRG | 6 cut(s) | 278, 612, 2080, 2249, 2647, 3626 |
| BsiSI | CCGG | 2 cut(s) | 141, 3515 |
| BsiWI | CGTACG | 1 cut(s) | 2233 |
| BslFI | GGGAC | 4 cut(s) | 877, 2215, 3608, 4000 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 510, 876, 2533, 2701, 2998, 3464, 3465, 3917, 3951 |
| BsmAI | GTCTC | 5 cut(s) | 1646, 1684, 2809, 3440, 3846 |
| BsmFI | GGGAC | 4 cut(s) | 877, 2215, 3608, 4000 |
| BsmI | GAATGC | 2 cut(s) | 2565, 3679 |
| Bso31I | GGTCTC | 2 cut(s) | 3440, 3846 |
| BsoBI | CYCGRG | 6 cut(s) | 278, 612, 2080, 2249, 2647, 3626 |
| Bsp119I | TTCGAA | 2 cut(s) | 473, 1949 |
| Bsp120I | GGGCCC | 1 cut(s) | 3177 |
| Bsp1286I | GDGCHC | 6 cut(s) | 1086, 1140, 2160, 2526, 3181, 3416 |
| Bsp19I | CCATGG | 2 cut(s) | 3537, 3883 |
| BspCNI | CTCAG | 9 cut(s) | 507, 1660, 1686, 1923, 2146, 2451, 3016, 3436, 3769 |
| BspFNI | CGCG | 2 cut(s) | 945, 3621 |
| BspHI | TCATGA | 1 cut(s) | 2875 |
| BspLI | GGNNCC | 8 cut(s) | 275, 865, 2426, 2602, 2797, 2977, 3179, 3415 |
| BspMAI | CTGCAG | 1 cut(s) | 862 |
| BspPI | GGATC | 7 cut(s) | 347, 498, 1071, 1204, 2754, 3527, 3754 |
| BspQI | GCTCTTC | 1 cut(s) | 3504 |
| BspT104I | TTCGAA | 2 cut(s) | 473, 1949 |
| BspT107I | GGYRCC | 2 cut(s) | 273, 2795 |
| BspTI | CTTAAG | 3 cut(s) | 2069, 2326, 2699 |
| BspTNI | GGTCTC | 2 cut(s) | 3440, 3846 |
| BsrFI | RCCGGY | 1 cut(s) | 3514 |
| BsrI | ACTGG | 3 cut(s) | 1232, 2244, 4019 |
| BssAI | RCCGGY | 1 cut(s) | 3514 |
| BssNI | GRCGYC | 3 cut(s) | 1564, 2174, 2883 |
| BssSI | CACGAG | 3 cut(s) | 1263, 3813, 3858 |
| BssT1I | CCWWGG | 5 cut(s) | 217, 504, 870, 3537, 3883 |
| Bst2BI | CACGAG | 3 cut(s) | 1263, 3813, 3858 |
| Bst2UI | CCWGG | 5 cut(s) | 978, 1542, 2528, 2625, 3595 |
| Bst4CI | ACNGT | 9 cut(s) | 255, 383, 1163, 1809, 1988, 3088, 3158, 3329, 3386 |
| Bst6I | CTCTTC | 5 cut(s) | 435, 1644, 1682, 3498, 3504 |
| BstACI | GRCGYC | 3 cut(s) | 1564, 2174, 2883 |
| BstAFI | CTTAAG | 3 cut(s) | 2069, 2326, 2699 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1489, 3616 |
| BstBAI | YACGTR | 2 cut(s) | 98, 2590 |
| BstBI | TTCGAA | 2 cut(s) | 473, 1949 |
| BstDSI | CCRYGG | 3 cut(s) | 2653, 3537, 3883 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 874, 2699, 3915 |
| BstFNI | CGCG | 2 cut(s) | 945, 3621 |
| BstH2I | RGCGCY | 2 cut(s) | 590, 2257 |
| BstHHI | GCGC | 3 cut(s) | 589, 2256, 3621 |
| BstMAI | GTCTC | 5 cut(s) | 1646, 1684, 2809, 3440, 3846 |
| BstMCI | CGRYCG | 1 cut(s) | 3519 |
| BstNI | CCWGG | 5 cut(s) | 978, 1542, 2528, 2625, 3595 |
| BstNSI | RCATGY | 5 cut(s) | 365, 1100, 1523, 1840, 2581 |
| BstSCI | CCNGG | 5 cut(s) | 976, 1540, 2526, 2623, 3593 |
| BstSFI | CTRYAG | 2 cut(s) | 858, 2714 |
| BstSLI | GKGCMC | 1 cut(s) | 3181 |
| BstUI | CGCG | 2 cut(s) | 945, 3621 |
| BstV1I | GCAGC | 7 cut(s) | 844, 949, 1860, 2406, 3601, 3619, 3985 |
| BstV2I | GAAGAC | 5 cut(s) | 96, 235, 2764, 3504, 3562 |
| BstX2I | RGATCY | 5 cut(s) | 228, 490, 1196, 2023, 2746 |
| BstYI | RGATCY | 5 cut(s) | 228, 490, 1196, 2023, 2746 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2820 |
| BsuI | GTATCC | 1 cut(s) | 1727 |
| BtgI | CCRYGG | 3 cut(s) | 2653, 3537, 3883 |
| BtgZI | GCGATG | 1 cut(s) | 3664 |
| BtsI | GCAGTG | 2 cut(s) | 856, 3792 |
| BtsIMutI | CAGTG | 4 cut(s) | 462, 856, 2446, 3792 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3951 |
| CciI | TCATGA | 1 cut(s) | 2875 |
| CfoI | GCGC | 3 cut(s) | 589, 2256, 3621 |
| Cfr10I | RCCGGY | 1 cut(s) | 3514 |
| CseI | GACGC | 4 cut(s) | 1553, 2891, 3557, 3610 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1144, 1179, 3069, 3104 |
| DraI | TTTAAA | 1 cut(s) | 4056 |
| EaeI | YGGCCR | 1 cut(s) | 2205 |
| Eam1104I | CTCTTC | 5 cut(s) | 435, 1644, 1682, 3498, 3504 |
| EarI | CTCTTC | 5 cut(s) | 435, 1644, 1682, 3498, 3504 |
| Ecl136II | GAGCTC | 1 cut(s) | 1084 |
| Eco130I | CCWWGG | 5 cut(s) | 217, 504, 870, 3537, 3883 |
| Eco24I | GRGCYC | 3 cut(s) | 1086, 3181, 3416 |
| Eco31I | GGTCTC | 2 cut(s) | 3440, 3846 |
| Eco32I | GATATC | 4 cut(s) | 7, 625, 820, 1513 |
| Eco47I | GGWCC | 6 cut(s) | 864, 1429, 3058, 3280, 3319, 3597 |
| Eco47III | AGCGCT | 1 cut(s) | 2255 |
| Eco53kI | GAGCTC | 1 cut(s) | 1084 |
| Eco57I | CTGAAG | 4 cut(s) | 64, 486, 1590, 2022 |
| Eco81I | CCTNAGG | 1 cut(s) | 2820 |
| Eco88I | CYCGRG | 6 cut(s) | 278, 612, 2080, 2249, 2647, 3626 |
| EcoICRI | GAGCTC | 1 cut(s) | 1084 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 874, 2699, 3915 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1429, 3178 |
| EcoRII | CCWGG | 5 cut(s) | 976, 1540, 2526, 2623, 3593 |
| EcoRV | GATATC | 4 cut(s) | 7, 625, 820, 1513 |
| EcoT14I | CCWWGG | 5 cut(s) | 217, 504, 870, 3537, 3883 |
| EcoT22I | ATGCAT | 2 cut(s) | 644, 1485 |
| EcoT38I | GRGCYC | 3 cut(s) | 1086, 3181, 3416 |
| ErhI | CCWWGG | 5 cut(s) | 217, 504, 870, 3537, 3883 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1062, 1094, 2976, 3008 |
| FaqI | GGGAC | 4 cut(s) | 877, 2215, 3608, 4000 |
| FauI | CCCGC | 4 cut(s) | 503, 2329, 3568, 3656 |
| FauNDI | CATATG | 1 cut(s) | 3129 |
| FblI | GTMKAC | 4 cut(s) | 924, 2380, 2582, 3519 |
| FriOI | GRGCYC | 3 cut(s) | 1086, 3181, 3416 |
| GlaI | GCGC | 3 cut(s) | 588, 2255, 3620 |
| GsaI | CCCAGC | 4 cut(s) | 320, 490, 1731, 3002 |
| GsuI | CTGGAG | 3 cut(s) | 250, 1249, 1563 |
| HaeII | RGCGCY | 2 cut(s) | 590, 2257 |
| HapII | CCGG | 2 cut(s) | 141, 3515 |
| HgaI | GACGC | 4 cut(s) | 1553, 2891, 3557, 3610 |
| HhaI | GCGC | 3 cut(s) | 589, 2256, 3621 |
| Hin1I | GRCGYC | 3 cut(s) | 1564, 2174, 2883 |
| Hin6I | GCGC | 3 cut(s) | 587, 2254, 3619 |
| HinP1I | GCGC | 3 cut(s) | 587, 2254, 3619 |
| HincII | GTYRAC | 5 cut(s) | 1814, 2583, 2788, 3520, 3556 |
| HindII | GTYRAC | 5 cut(s) | 1814, 2583, 2788, 3520, 3556 |
| HindIII | AAGCTT | 4 cut(s) | 76, 468, 2323, 2453 |
| HpaII | CCGG | 2 cut(s) | 141, 3515 |
| HphI | GGTGA | 3 cut(s) | 2056, 2420, 3341 |
| Hpy99I | CGWCG | 7 cut(s) | 1304, 3374, 3377, 3380, 3422, 3425, 3524 |
| HpyCH4III | ACNGT | 9 cut(s) | 255, 383, 1163, 1809, 1988, 3088, 3158, 3329, 3386 |
| Hsp92I | GRCGYC | 3 cut(s) | 1564, 2174, 2883 |
| HspAI | GCGC | 3 cut(s) | 587, 2254, 3619 |
| KpnI | GGTACC | 1 cut(s) | 2799 |
| LguI | GCTCTTC | 1 cut(s) | 3504 |
| LmnI | GCTCC | 6 cut(s) | 283, 1089, 1707, 2424, 2521, 3419 |
| Lsp1109I | GCAGC | 7 cut(s) | 844, 949, 1860, 2406, 3601, 3619, 3985 |
| LweI | GCATC | 6 cut(s) | 651, 1470, 3107, 3322, 3606, 3698 |
| MaeIII | GTNAC | 8 cut(s) | 1450, 2182, 2267, 2408, 2683, 3158, 3892, 3991 |
| MfeI | CAATTG | 2 cut(s) | 392, 1283 |
| MflI | RGATCY | 5 cut(s) | 228, 490, 1196, 2023, 2746 |
| MhlI | GDGCHC | 6 cut(s) | 1086, 1140, 2160, 2526, 3181, 3416 |
| MlyI | GAGTC | 5 cut(s) | 885, 1651, 2041, 3409, 3898 |
| MmeI | TCCRAC | 5 cut(s) | 580, 652, 1729, 2997, 3441 |
| Mph1103I | ATGCAT | 2 cut(s) | 644, 1485 |
| MroXI | GAANNNNTTC | 1 cut(s) | 885 |
| MslI | CAYNNNNRTG | 2 cut(s) | 120, 411 |
| MspA1I | CMGCKG | 3 cut(s) | 270, 1177, 3951 |
| MspCI | CTTAAG | 3 cut(s) | 2069, 2326, 2699 |
| MspI | CCGG | 2 cut(s) | 141, 3515 |
| MspR9I | CCNGG | 5 cut(s) | 978, 1542, 2528, 2625, 3595 |
| MunI | CAATTG | 2 cut(s) | 392, 1283 |
| Mva1269I | GAATGC | 2 cut(s) | 2565, 3679 |
| MvaI | CCWGG | 5 cut(s) | 978, 1542, 2528, 2625, 3595 |
| MvnI | CGCG | 2 cut(s) | 945, 3621 |
| NcoI | CCATGG | 2 cut(s) | 3537, 3883 |
| NdeI | CATATG | 1 cut(s) | 3129 |
| NlaIV | GGNNCC | 8 cut(s) | 275, 865, 2426, 2602, 2797, 2977, 3179, 3415 |
| NmeAIII | GCCGAG | 2 cut(s) | 1665, 3886 |
| NmuCI | GTSAC | 3 cut(s) | 2182, 2408, 2683 |
| NsiI | ATGCAT | 2 cut(s) | 644, 1485 |
| NspI | RCATGY | 5 cut(s) | 365, 1100, 1523, 1840, 2581 |
| NspV | TTCGAA | 2 cut(s) | 473, 1949 |
| PaeI | GCATGC | 2 cut(s) | 1100, 1523 |
| PaeR7I | CTCGAG | 3 cut(s) | 278, 612, 2249 |
| PagI | TCATGA | 1 cut(s) | 2875 |
| PasI | CCCWGGG | 1 cut(s) | 977 |
| PciSI | GCTCTTC | 1 cut(s) | 3504 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 2938, 3375, 3528 |
| PctI | GAATGC | 2 cut(s) | 2565, 3679 |
| PdmI | GAANNNNTTC | 1 cut(s) | 885 |
| Pfl23II | CGTACG | 1 cut(s) | 2233 |
| PflFI | GACNNNGTC | 1 cut(s) | 3551 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3951 |
| PleI | GAGTC | 5 cut(s) | 885, 1650, 2040, 3408, 3898 |
| PpsI | GAGTC | 5 cut(s) | 885, 1650, 2040, 3408, 3898 |
| Ppu21I | YACGTR | 2 cut(s) | 98, 2590 |
| PpuMI | RGGWCCY | 1 cut(s) | 1429 |
| PshBI | ATTAAT | 1 cut(s) | 2928 |
| PsiI | TTATAA | 1 cut(s) | 726 |
| Psp124BI | GAGCTC | 1 cut(s) | 1086 |
| Psp1406I | AACGTT | 1 cut(s) | 2515 |
| Psp5II | RGGWCCY | 1 cut(s) | 1429 |
| Psp6I | CCWGG | 5 cut(s) | 976, 1540, 2526, 2623, 3593 |
| PspFI | CCCAGC | 4 cut(s) | 316, 486, 1727, 2998 |
| PspGI | CCWGG | 5 cut(s) | 976, 1540, 2526, 2623, 3593 |
| PspLI | CGTACG | 1 cut(s) | 2233 |
| PspN4I | GGNNCC | 8 cut(s) | 275, 865, 2426, 2602, 2797, 2977, 3179, 3415 |
| PspOMI | GGGCCC | 1 cut(s) | 3177 |
| PspPPI | RGGWCCY | 1 cut(s) | 1429 |
| PspXI | VCTCGAGB | 2 cut(s) | 278, 2249 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3700, 3732 |
| PstI | CTGCAG | 1 cut(s) | 862 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3951 |
| PsuI | RGATCY | 5 cut(s) | 228, 490, 1196, 2023, 2746 |
| PsyI | GACNNNGTC | 1 cut(s) | 3551 |
| PvuII | CAGCTG | 1 cut(s) | 270 |
| RseI | CAYNNNNRTG | 2 cut(s) | 120, 411 |
| SacI | GAGCTC | 1 cut(s) | 1086 |
| SalI | GTCGAC | 2 cut(s) | 2581, 3518 |
| SapI | GCTCTTC | 1 cut(s) | 3504 |
| ScaI | AGTACT | 1 cut(s) | 1666 |
| SchI | GAGTC | 5 cut(s) | 885, 1651, 2041, 3409, 3898 |
| ScrFI | CCNGG | 5 cut(s) | 978, 1542, 2528, 2625, 3595 |
| SduI | GDGCHC | 6 cut(s) | 1086, 1140, 2160, 2526, 3181, 3416 |
| SfaNI | GCATC | 6 cut(s) | 651, 1470, 3107, 3322, 3606, 3698 |
| SfcI | CTRYAG | 2 cut(s) | 858, 2714 |
| Sfr274I | CTCGAG | 3 cut(s) | 278, 612, 2249 |
| SfuI | TTCGAA | 2 cut(s) | 473, 1949 |
| SinI | GGWCC | 6 cut(s) | 864, 1429, 3058, 3280, 3319, 3597 |
| SlaI | CTCGAG | 3 cut(s) | 278, 612, 2249 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 120, 411 |
| SpeI | ACTAGT | 2 cut(s) | 1655, 2945 |
| SphI | GCATGC | 2 cut(s) | 1100, 1523 |
| SspI | AATATT | 1 cut(s) | 1332 |
| SstI | GAGCTC | 1 cut(s) | 1086 |
| StyD4I | CCNGG | 5 cut(s) | 976, 1540, 2526, 2623, 3593 |
| StyI | CCWWGG | 5 cut(s) | 217, 504, 870, 3537, 3883 |
| TaaI | ACNGT | 9 cut(s) | 255, 383, 1163, 1809, 1988, 3088, 3158, 3329, 3386 |
| TaqII | GACCGA | 1 cut(s) | 3464 |
| TatI | WGTACW | 1 cut(s) | 1664 |
| TauI | GCSGC | 3 cut(s) | 2290, 3566, 3951 |
| TscAI | CASTG | 4 cut(s) | 469, 856, 2446, 3792 |
| TseFI | GTSAC | 3 cut(s) | 2182, 2408, 2683 |
| TseI | GCWGC | 7 cut(s) | 857, 937, 1848, 2394, 3589, 3607, 3973 |
| Tsp45I | GTSAC | 3 cut(s) | 2182, 2408, 2683 |
| TspDTI | ATGAA | 8 cut(s) | 61, 138, 429, 1260, 1700, 1783, 2447, 3981 |
| TspGWI | ACGGA | 2 cut(s) | 1564, 2670 |
| TspRI | CASTG | 4 cut(s) | 469, 856, 2446, 3792 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3551 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3951 |
| Vha464I | CTTAAG | 3 cut(s) | 2069, 2326, 2699 |
| VpaK11BI | GGWCC | 6 cut(s) | 864, 1429, 3058, 3280, 3319, 3597 |
| VspI | ATTAAT | 1 cut(s) | 2928 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 874, 2699, 3915 |
| XceI | RCATGY | 5 cut(s) | 365, 1100, 1523, 1840, 2581 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2236 |
| XhoI | CTCGAG | 3 cut(s) | 278, 612, 2249 |
| XmiI | GTMKAC | 4 cut(s) | 924, 2380, 2582, 3519 |
| XmnI | GAANNNNTTC | 1 cut(s) | 885 |
| ZraI | GACGTC | 1 cut(s) | 2175 |
| ZrmI | AGTACT | 1 cut(s) | 1666 |
| Zsp2I | ATGCAT | 2 cut(s) | 644, 1485 |