TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 23 - 201 | 2e-48 | TIR domain |
| TIR_2 | PF13676 | 25 - 125 | 1.3e-17 | TIR domain |
| NB-ARC | PF00931 | 218 - 384 | 8.9e-21 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 453 - 522 | 2e-15 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 682 - 791 | 8.6e-08 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 784 - 882 | 6.2e-06 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 765 |
| AccII | CGCG | 1 cut(s) | 103 |
| AciI | CCGC | 8 cut(s) | 9, 30, 266, 1217, 1747, 2778, 2992, 3096 |
| AclWI | GGATC | 4 cut(s) | 309, 353, 2415, 3139 |
| AcoI | YGGCCR | 5 cut(s) | 517, 624, 804, 1539, 1570 |
| AcsI | RAATTY | 8 cut(s) | 508, 771, 788, 1230, 2174, 2316, 2692, 3121 |
| AcuI | CTGAAG | 3 cut(s) | 70, 1907, 2409 |
| AdeI | CACNNNGTG | 1 cut(s) | 73 |
| AfaI | GTAC | 6 cut(s) | 951, 1702, 1896, 2239, 2918, 2983 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1166, 2054, 2590, 2703, 2991 |
| AflII | CTTAAG | 1 cut(s) | 1739 |
| AflIII | ACRYGT | 5 cut(s) | 72, 101, 331, 367, 619 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2032 |
| AhlI | ACTAGT | 1 cut(s) | 1861 |
| AjiI | CACGTC | 2 cut(s) | 73, 332 |
| AjnI | CCWGG | 6 cut(s) | 153, 801, 1024, 1567, 2671, 2800 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 997, 1029 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1452, 1484, 2407, 2439 |
| Alw21I | GWGCWC | 3 cut(s) | 1761, 1992, 2726 |
| Alw44I | GTGCAC | 1 cut(s) | 2722 |
| AlwI | GGATC | 4 cut(s) | 309, 353, 2415, 3139 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 503 |
| Ama87I | CYCGRG | 1 cut(s) | 2872 |
| AoxI | GGCC | 8 cut(s) | 118, 517, 624, 804, 1157, 1365, 1539, 1570 |
| ApaLI | GTGCAC | 1 cut(s) | 2722 |
| ApeKI | GCWGC | 2 cut(s) | 131, 503 |
| ApoI | RAATTY | 8 cut(s) | 508, 771, 788, 1230, 2174, 2316, 2692, 3121 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 597, 646, 2095 |
| AspA2I | CCTAGG | 1 cut(s) | 2299 |
| AspS9I | GGNCC | 3 cut(s) | 118, 1022, 2994 |
| AsuHPI | GGTGA | 4 cut(s) | 307, 1606, 2036, 3290 |
| AsuNHI | GCTAGC | 1 cut(s) | 1219 |
| AvaI | CYCGRG | 1 cut(s) | 2872 |
| AvaII | GGWCC | 2 cut(s) | 1022, 2994 |
| AvrII | CCTAGG | 1 cut(s) | 2299 |
| BaeGI | GKGCMC | 1 cut(s) | 2726 |
| BalI | TGGCCA | 4 cut(s) | 519, 626, 1541, 1572 |
| BanII | GRGCYC | 3 cut(s) | 1350, 1761, 1992 |
| BauI | CACGAG | 1 cut(s) | 1050 |
| BbsI | GAAGAC | 2 cut(s) | 102, 241 |
| Bbv12I | GWGCWC | 3 cut(s) | 1761, 1992, 2726 |
| BbvI | GCAGC | 2 cut(s) | 143, 490 |
| BccI | CCATC | 6 cut(s) | 718, 1395, 2760, 2873, 3054, 3288 |
| BceAI | ACGGC | 3 cut(s) | 1704, 2356, 2558 |
| BciT130I | CCWGG | 6 cut(s) | 155, 803, 1026, 1569, 2673, 2802 |
| BciVI | GTATCC | 1 cut(s) | 143 |
| BclI | TGATCA | 1 cut(s) | 2839 |
| BcuI | ACTAGT | 1 cut(s) | 1861 |
| BfaI | CTAG | 9 cut(s) | 1220, 1644, 1667, 1692, 1862, 1871, 2300, 3185, 3267 |
| BfrI | CTTAAG | 1 cut(s) | 1739 |
| BfuI | GTATCC | 1 cut(s) | 143 |
| BglII | AGATCT | 2 cut(s) | 175, 234 |
| BisI | GCNGC | 4 cut(s) | 30, 132, 504, 1217 |
| BlnI | CCTAGG | 1 cut(s) | 2299 |
| BlsI | GCNGC | 4 cut(s) | 31, 133, 505, 1218 |
| Bme1390I | CCNGG | 6 cut(s) | 155, 803, 1026, 1569, 2673, 2802 |
| Bme18I | GGWCC | 2 cut(s) | 1022, 2994 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2032 |
| BmeT110I | CYCGRG | 1 cut(s) | 2872 |
| BmgBI | CACGTC | 2 cut(s) | 73, 332 |
| BmgT120I | GGNCC | 3 cut(s) | 118, 1022, 2994 |
| BmiI | GGNNCC | 2 cut(s) | 1912, 2670 |
| BmrFI | CCNGG | 6 cut(s) | 155, 803, 1026, 1569, 2673, 2802 |
| BmsI | GCATC | 4 cut(s) | 432, 982, 1423, 1472 |
| BmtI | GCTAGC | 1 cut(s) | 1223 |
| BpiI | GAAGAC | 2 cut(s) | 102, 241 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 475, 507 |
| BpmI | CTGGAG | 1 cut(s) | 2434 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1095 |
| BpuEI | CTTGAG | 4 cut(s) | 100, 381, 1142, 1590 |
| Bsa29I | ATCGAT | 1 cut(s) | 165 |
| BsaAI | YACGTR | 1 cut(s) | 1753 |
| BsaBI | GATNNNNATC | 1 cut(s) | 239 |
| BsaJI | CCNNGG | 7 cut(s) | 1025, 1567, 2117, 2299, 2697, 2800, 2801 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 918, 948, 2407, 2437 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1166, 2054, 2590, 2703, 2991 |
| Bse1I | ACTGG | 3 cut(s) | 993, 1896, 2100 |
| Bse3DI | GCAATG | 2 cut(s) | 485, 1510 |
| Bse8I | GATNNNNATC | 1 cut(s) | 239 |
| BseBI | CCWGG | 6 cut(s) | 155, 803, 1026, 1569, 2673, 2802 |
| BseCI | ATCGAT | 1 cut(s) | 165 |
| BseDI | CCNNGG | 7 cut(s) | 1025, 1567, 2117, 2299, 2697, 2800, 2801 |
| BseGI | GGATG | 9 cut(s) | 38, 423, 729, 997, 1406, 1820, 2240, 2771, 3259 |
| BseJI | GATNNNNATC | 1 cut(s) | 239 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1166, 2054, 2590, 2703, 2991 |
| BseMI | GCAATG | 2 cut(s) | 485, 1510 |
| BseMII | CTCAG | 6 cut(s) | 1109, 1721, 1960, 2491, 2655, 3097 |
| BseNI | ACTGG | 3 cut(s) | 993, 1896, 2100 |
| BseRI | GAGGAG | 2 cut(s) | 34, 1293 |
| BseSI | GKGCMC | 1 cut(s) | 2726 |
| BseXI | GCAGC | 2 cut(s) | 143, 490 |
| BseYI | CCCAGC | 1 cut(s) | 2471 |
| BsgI | GTGCAG | 1 cut(s) | 331 |
| Bsh1236I | CGCG | 1 cut(s) | 103 |
| BshFI | GGCC | 8 cut(s) | 120, 519, 626, 806, 1159, 1367, 1541, 1572 |
| BshVI | ATCGAT | 1 cut(s) | 165 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1761, 1992, 2726 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2872 |
| BsiSI | CCGG | 1 cut(s) | 2603 |
| BslFI | GGGAC | 3 cut(s) | 339, 3075, 3206 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1166, 2054, 2590, 2703, 2991 |
| BsmFI | GGGAC | 3 cut(s) | 339, 3075, 3206 |
| BsmI | GAATGC | 1 cut(s) | 654 |
| BsnI | GGCC | 8 cut(s) | 120, 519, 626, 806, 1159, 1367, 1541, 1572 |
| BsoBI | CYCGRG | 1 cut(s) | 2872 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1350, 1761, 1992, 2726 |
| Bsp143I | GATC | 8 cut(s) | 175, 234, 300, 314, 358, 2407, 2839, 3131 |
| BspACI | CCGC | 8 cut(s) | 9, 30, 266, 1217, 1747, 2778, 2992, 3096 |
| BspANI | GGCC | 8 cut(s) | 120, 519, 626, 806, 1159, 1367, 1541, 1572 |
| BspCNI | CTCAG | 6 cut(s) | 1108, 1722, 1959, 2490, 2656, 3096 |
| BspDI | ATCGAT | 1 cut(s) | 165 |
| BspFNI | CGCG | 1 cut(s) | 103 |
| BspHI | TCATGA | 2 cut(s) | 705, 1938 |
| BspLI | GGNNCC | 2 cut(s) | 1912, 2670 |
| BspOI | GCTAGC | 1 cut(s) | 1223 |
| BspPI | GGATC | 4 cut(s) | 309, 353, 2415, 3139 |
| BspTI | CTTAAG | 1 cut(s) | 1739 |
| BsrDI | GCAATG | 2 cut(s) | 485, 1510 |
| BsrI | ACTGG | 3 cut(s) | 993, 1896, 2100 |
| BssECI | CCNNGG | 7 cut(s) | 1025, 1567, 2117, 2299, 2697, 2800, 2801 |
| BssMI | GATC | 8 cut(s) | 175, 234, 300, 314, 358, 2407, 2839, 3131 |
| BssSI | CACGAG | 1 cut(s) | 1050 |
| BssT1I | CCWWGG | 1 cut(s) | 2299 |
| Bst2BI | CACGAG | 1 cut(s) | 1050 |
| Bst2UI | CCWGG | 6 cut(s) | 155, 803, 1026, 1569, 2673, 2802 |
| Bst4CI | ACNGT | 9 cut(s) | 210, 748, 1205, 1495, 1705, 2030, 2096, 2737, 2962 |
| Bst6I | CTCTTC | 5 cut(s) | 40, 219, 411, 1998, 2118 |
| BstAFI | CTTAAG | 1 cut(s) | 1739 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 503, 1525 |
| BstBAI | YACGTR | 1 cut(s) | 1753 |
| BstC8I | GCNNGC | 3 cut(s) | 22, 1140, 1221 |
| BstDSI | CCRYGG | 1 cut(s) | 2697 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1164 |
| BstF5I | GGATG | 9 cut(s) | 38, 423, 729, 997, 1406, 1820, 2240, 2771, 3259 |
| BstFNI | CGCG | 1 cut(s) | 103 |
| BstKTI | GATC | 8 cut(s) | 178, 237, 303, 317, 361, 2410, 2842, 3134 |
| BstMBI | GATC | 8 cut(s) | 175, 234, 300, 314, 358, 2407, 2839, 3131 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 17, 26, 90, 117, 503, 1525, 3088 |
| BstNI | CCWGG | 6 cut(s) | 155, 803, 1026, 1569, 2673, 2802 |
| BstNSI | RCATGY | 5 cut(s) | 371, 623, 1142, 1440, 1879 |
| BstSCI | CCNGG | 6 cut(s) | 153, 801, 1024, 1567, 2671, 2800 |
| BstSLI | GKGCMC | 1 cut(s) | 2726 |
| BstSNI | TACGTA | 1 cut(s) | 1753 |
| BstUI | CGCG | 1 cut(s) | 103 |
| BstV1I | GCAGC | 2 cut(s) | 143, 490 |
| BstV2I | GAAGAC | 2 cut(s) | 102, 241 |
| BstX2I | RGATCY | 5 cut(s) | 175, 234, 314, 2407, 3131 |
| BstYI | RGATCY | 5 cut(s) | 175, 234, 314, 2407, 3131 |
| Bsu15I | ATCGAT | 1 cut(s) | 165 |
| BsuI | GTATCC | 1 cut(s) | 143 |
| BsuRI | GGCC | 8 cut(s) | 120, 519, 626, 806, 1159, 1367, 1541, 1572 |
| BsuTUI | ATCGAT | 1 cut(s) | 165 |
| BtgI | CCRYGG | 1 cut(s) | 2697 |
| BtgZI | GCGATG | 1 cut(s) | 2892 |
| BtrI | CACGTC | 2 cut(s) | 73, 332 |
| BtsCI | GGATG | 9 cut(s) | 38, 423, 729, 997, 1406, 1820, 2240, 2771, 3259 |
| BtsI | GCAGTG | 2 cut(s) | 904, 1886 |
| BtsIMutI | CAGTG | 5 cut(s) | 904, 1471, 1886, 2485, 2661 |
| Cac8I | GCNNGC | 3 cut(s) | 22, 1140, 1221 |
| CaiI | CAGNNNCTG | 1 cut(s) | 503 |
| CciI | TCATGA | 2 cut(s) | 705, 1938 |
| Cfr13I | GGNCC | 3 cut(s) | 118, 1022, 2994 |
| ClaI | ATCGAT | 1 cut(s) | 165 |
| Csp6I | GTAC | 6 cut(s) | 950, 1701, 1895, 2238, 2917, 2982 |
| CviQI | GTAC | 6 cut(s) | 950, 1701, 1895, 2238, 2917, 2982 |
| DpnI | GATC | 8 cut(s) | 177, 236, 302, 316, 360, 2409, 2841, 3133 |
| DpnII | GATC | 8 cut(s) | 175, 234, 300, 314, 358, 2407, 2839, 3131 |
| DraI | TTTAAA | 1 cut(s) | 1824 |
| DraIII | CACNNNGTG | 1 cut(s) | 73 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2032 |
| EaeI | YGGCCR | 5 cut(s) | 517, 624, 804, 1539, 1570 |
| Eam1104I | CTCTTC | 5 cut(s) | 40, 219, 411, 1998, 2118 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2032 |
| EarI | CTCTTC | 5 cut(s) | 40, 219, 411, 1998, 2118 |
| Ecl136II | GAGCTC | 2 cut(s) | 1759, 1990 |
| Eco105I | TACGTA | 1 cut(s) | 1753 |
| Eco130I | CCWWGG | 1 cut(s) | 2299 |
| Eco24I | GRGCYC | 3 cut(s) | 1350, 1761, 1992 |
| Eco32I | GATATC | 3 cut(s) | 1172, 2211, 2866 |
| Eco47I | GGWCC | 2 cut(s) | 1022, 2994 |
| Eco53kI | GAGCTC | 2 cut(s) | 1759, 1990 |
| Eco57I | CTGAAG | 3 cut(s) | 70, 1907, 2409 |
| Eco88I | CYCGRG | 1 cut(s) | 2872 |
| EcoICRI | GAGCTC | 2 cut(s) | 1759, 1990 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1164 |
| EcoRI | GAATTC | 1 cut(s) | 788 |
| EcoRII | CCWGG | 6 cut(s) | 153, 801, 1024, 1567, 2671, 2800 |
| EcoRV | GATATC | 3 cut(s) | 1172, 2211, 2866 |
| EcoT14I | CCWWGG | 1 cut(s) | 2299 |
| EcoT22I | ATGCAT | 2 cut(s) | 1144, 1438 |
| EcoT38I | GRGCYC | 3 cut(s) | 1350, 1761, 1992 |
| ErhI | CCWWGG | 1 cut(s) | 2299 |
| FaqI | GGGAC | 3 cut(s) | 339, 3075, 3206 |
| FauI | CCCGC | 1 cut(s) | 3089 |
| FbaI | TGATCA | 1 cut(s) | 2839 |
| Fnu4HI | GCNGC | 4 cut(s) | 30, 132, 504, 1217 |
| FokI | GGATG | 9 cut(s) | 25, 410, 736, 1004, 1413, 1827, 2227, 2778, 3246 |
| FriOI | GRGCYC | 3 cut(s) | 1350, 1761, 1992 |
| Fsp4HI | GCNGC | 4 cut(s) | 30, 132, 504, 1217 |
| FspBI | CTAG | 9 cut(s) | 1220, 1644, 1667, 1692, 1862, 1871, 2300, 3185, 3267 |
| GluI | GCNGC | 4 cut(s) | 30, 132, 504, 1217 |
| GsaI | CCCAGC | 1 cut(s) | 2475 |
| GsuI | CTGGAG | 1 cut(s) | 2434 |
| HaeIII | GGCC | 8 cut(s) | 120, 519, 626, 806, 1159, 1367, 1541, 1572 |
| HapII | CCGG | 1 cut(s) | 2603 |
| HincII | GTYRAC | 2 cut(s) | 577, 2511 |
| HindII | GTYRAC | 2 cut(s) | 577, 2511 |
| HindIII | AAGCTT | 1 cut(s) | 1336 |
| HpaI | GTTAAC | 1 cut(s) | 2511 |
| HpaII | CCGG | 1 cut(s) | 2603 |
| HphI | GGTGA | 4 cut(s) | 307, 1606, 2036, 3290 |
| Hpy166II | GTNNAC | 8 cut(s) | 577, 830, 1078, 1478, 1889, 2083, 2511, 2724 |
| Hpy8I | GTNNAC | 8 cut(s) | 577, 830, 1078, 1478, 1889, 2083, 2511, 2724 |
| Hpy99I | CGWCG | 4 cut(s) | 74, 333, 812, 1622 |
| HpyCH4III | ACNGT | 9 cut(s) | 210, 748, 1205, 1495, 1705, 2030, 2096, 2737, 2962 |
| HpyCH4IV | ACGT | 8 cut(s) | 72, 331, 451, 810, 1009, 1620, 1752, 3146 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 17, 26, 90, 117, 503, 1525, 3088 |
| HpySE526I | ACGT | 8 cut(s) | 72, 331, 451, 810, 1009, 1620, 1752, 3146 |
| Ksp22I | TGATCA | 1 cut(s) | 2839 |
| KspAI | GTTAAC | 1 cut(s) | 2511 |
| Kzo9I | GATC | 8 cut(s) | 175, 234, 300, 314, 358, 2407, 2839, 3131 |
| LmnI | GCTCC | 3 cut(s) | 1749, 1958, 1995 |
| Lsp1109I | GCAGC | 2 cut(s) | 143, 490 |
| LweI | GCATC | 4 cut(s) | 432, 982, 1423, 1472 |
| MaeI | CTAG | 9 cut(s) | 1220, 1644, 1667, 1692, 1862, 1871, 2300, 3185, 3267 |
| MaeII | ACGT | 8 cut(s) | 72, 331, 451, 810, 1009, 1620, 1752, 3146 |
| MaeIII | GTNAC | 4 cut(s) | 1489, 1612, 2024, 2334 |
| MalI | GATC | 8 cut(s) | 177, 236, 302, 316, 360, 2409, 2841, 3133 |
| MboI | GATC | 8 cut(s) | 175, 234, 300, 314, 358, 2407, 2839, 3131 |
| MfeI | CAATTG | 2 cut(s) | 1280, 2949 |
| MflI | RGATCY | 5 cut(s) | 175, 234, 314, 2407, 3131 |
| MhlI | GDGCHC | 4 cut(s) | 1350, 1761, 1992, 2726 |
| MlsI | TGGCCA | 4 cut(s) | 519, 626, 1541, 1572 |
| MluI | ACGCGT | 1 cut(s) | 101 |
| MluNI | TGGCCA | 4 cut(s) | 519, 626, 1541, 1572 |
| MlyI | GAGTC | 4 cut(s) | 236, 2064, 2425, 2896 |
| MmeI | TCCRAC | 2 cut(s) | 619, 961 |
| Mox20I | TGGCCA | 4 cut(s) | 519, 626, 1541, 1572 |
| Mph1103I | ATGCAT | 2 cut(s) | 1144, 1438 |
| MroXI | GAANNNNTTC | 3 cut(s) | 597, 646, 2095 |
| MscI | TGGCCA | 4 cut(s) | 519, 626, 1541, 1572 |
| Msp20I | TGGCCA | 4 cut(s) | 519, 626, 1541, 1572 |
| MspCI | CTTAAG | 1 cut(s) | 1739 |
| MspI | CCGG | 1 cut(s) | 2603 |
| MspR9I | CCNGG | 6 cut(s) | 155, 803, 1026, 1569, 2673, 2802 |
| MunI | CAATTG | 2 cut(s) | 1280, 2949 |
| Mva1269I | GAATGC | 1 cut(s) | 654 |
| MvaI | CCWGG | 6 cut(s) | 155, 803, 1026, 1569, 2673, 2802 |
| MvnI | CGCG | 1 cut(s) | 103 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 17, 26, 90, 117, 503, 1525, 3088 |
| NdeII | GATC | 8 cut(s) | 175, 234, 300, 314, 358, 2407, 2839, 3131 |
| NheI | GCTAGC | 1 cut(s) | 1219 |
| NlaIV | GGNNCC | 2 cut(s) | 1912, 2670 |
| NmuCI | GTSAC | 2 cut(s) | 1612, 2024 |
| NsiI | ATGCAT | 2 cut(s) | 1144, 1438 |
| NspI | RCATGY | 5 cut(s) | 371, 623, 1142, 1440, 1879 |
| PaeI | GCATGC | 1 cut(s) | 1142 |
| PaeR7I | CTCGAG | 1 cut(s) | 2872 |
| PagI | TCATGA | 2 cut(s) | 705, 1938 |
| PasI | CCCWGGG | 1 cut(s) | 2801 |
| PciI | ACATGT | 2 cut(s) | 367, 619 |
| PctI | GAATGC | 1 cut(s) | 654 |
| PdmI | GAANNNNTTC | 3 cut(s) | 597, 646, 2095 |
| PflFI | GACNNNGTC | 2 cut(s) | 1415, 1662 |
| PkrI | GCNGC | 4 cut(s) | 31, 133, 505, 1218 |
| PleI | GAGTC | 4 cut(s) | 235, 2064, 2424, 2896 |
| PpsI | GAGTC | 4 cut(s) | 235, 2064, 2424, 2896 |
| Ppu21I | YACGTR | 1 cut(s) | 1753 |
| PscI | ACATGT | 2 cut(s) | 367, 619 |
| PsiI | TTATAA | 1 cut(s) | 765 |
| Psp124BI | GAGCTC | 2 cut(s) | 1761, 1992 |
| Psp6I | CCWGG | 6 cut(s) | 153, 801, 1024, 1567, 2671, 2800 |
| PspFI | CCCAGC | 1 cut(s) | 2471 |
| PspGI | CCWGG | 6 cut(s) | 153, 801, 1024, 1567, 2671, 2800 |
| PspN4I | GGNNCC | 2 cut(s) | 1912, 2670 |
| PspPI | GGNCC | 3 cut(s) | 118, 1022, 2994 |
| PspXI | VCTCGAGB | 1 cut(s) | 2872 |
| PstNI | CAGNNNCTG | 1 cut(s) | 503 |
| PsuI | RGATCY | 5 cut(s) | 175, 234, 314, 2407, 3131 |
| PsyI | GACNNNGTC | 2 cut(s) | 1415, 1662 |
| RsaI | GTAC | 6 cut(s) | 951, 1702, 1896, 2239, 2918, 2983 |
| RsaNI | GTAC | 6 cut(s) | 950, 1701, 1895, 2238, 2917, 2982 |
| SacI | GAGCTC | 2 cut(s) | 1761, 1992 |
| SatI | GCNGC | 4 cut(s) | 30, 132, 504, 1217 |
| Sau3AI | GATC | 8 cut(s) | 175, 234, 300, 314, 358, 2407, 2839, 3131 |
| Sau96I | GGNCC | 3 cut(s) | 118, 1022, 2994 |
| SchI | GAGTC | 4 cut(s) | 236, 2064, 2425, 2896 |
| ScrFI | CCNGG | 6 cut(s) | 155, 803, 1026, 1569, 2673, 2802 |
| SduI | GDGCHC | 4 cut(s) | 1350, 1761, 1992, 2726 |
| SfaNI | GCATC | 4 cut(s) | 432, 982, 1423, 1472 |
| Sfr274I | CTCGAG | 1 cut(s) | 2872 |
| SinI | GGWCC | 2 cut(s) | 1022, 2994 |
| SlaI | CTCGAG | 1 cut(s) | 2872 |
| SmlI | CTYRAG | 6 cut(s) | 79, 396, 1121, 1605, 1739, 2872 |
| SmoI | CTYRAG | 6 cut(s) | 79, 396, 1121, 1605, 1739, 2872 |
| SnaBI | TACGTA | 1 cut(s) | 1753 |
| SpeI | ACTAGT | 1 cut(s) | 1861 |
| SphI | GCATGC | 1 cut(s) | 1142 |
| SsiI | CCGC | 8 cut(s) | 9, 30, 266, 1217, 1747, 2778, 2992, 3096 |
| SspI | AATATT | 5 cut(s) | 345, 664, 2013, 2502, 3027 |
| SspMI | CTAG | 9 cut(s) | 1220, 1644, 1667, 1692, 1862, 1871, 2300, 3185, 3267 |
| SstI | GAGCTC | 2 cut(s) | 1761, 1992 |
| StyD4I | CCNGG | 6 cut(s) | 153, 801, 1024, 1567, 2671, 2800 |
| StyI | CCWWGG | 1 cut(s) | 2299 |
| TaaI | ACNGT | 9 cut(s) | 210, 748, 1205, 1495, 1705, 2030, 2096, 2737, 2962 |
| TaiI | ACGT | 8 cut(s) | 75, 334, 454, 813, 1012, 1623, 1755, 3149 |
| TaqI | TCGA | 9 cut(s) | 165, 222, 272, 1350, 1531, 2064, 2135, 2873, 3071 |
| TatI | WGTACW | 2 cut(s) | 1700, 2237 |
| TauI | GCSGC | 2 cut(s) | 32, 1219 |
| TscAI | CASTG | 5 cut(s) | 904, 1471, 1886, 2485, 2668 |
| TseFI | GTSAC | 2 cut(s) | 1612, 2024 |
| TseI | GCWGC | 2 cut(s) | 131, 503 |
| Tsp45I | GTSAC | 2 cut(s) | 1612, 2024 |
| TspGWI | ACGGA | 3 cut(s) | 399, 416, 2686 |
| TspRI | CASTG | 5 cut(s) | 904, 1471, 1886, 2485, 2668 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1415, 1662 |
| Vha464I | CTTAAG | 1 cut(s) | 1739 |
| VneI | GTGCAC | 1 cut(s) | 2722 |
| VpaK11BI | GGWCC | 2 cut(s) | 1022, 2994 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1164 |
| XapI | RAATTY | 8 cut(s) | 508, 771, 788, 1230, 2174, 2316, 2692, 3121 |
| XbaI | TCTAGA | 2 cut(s) | 1666, 1870 |
| XceI | RCATGY | 5 cut(s) | 371, 623, 1142, 1440, 1879 |
| XhoI | CTCGAG | 1 cut(s) | 2872 |
| XmaJI | CCTAGG | 1 cut(s) | 2299 |
| XmnI | GAANNNNTTC | 3 cut(s) | 597, 646, 2095 |
| XspI | CTAG | 9 cut(s) | 1220, 1644, 1667, 1692, 1862, 1871, 2300, 3185, 3267 |
| Zsp2I | ATGCAT | 2 cut(s) | 1144, 1438 |