TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 49 - 108 | 1.6e-07 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 192 |
| AciI | CCGC | 1 cut(s) | 221 |
| AcsI | RAATTY | 4 cut(s) | 25, 154, 499, 532 |
| AcuI | CTGAAG | 2 cut(s) | 191, 650 |
| AfaI | GTAC | 1 cut(s) | 466 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 192, 321 |
| AgsI | TTSAA | 6 cut(s) | 91, 152, 290, 482, 523, 677 |
| AluBI | AGCT | 4 cut(s) | 169, 270, 328, 485 |
| AluI | AGCT | 4 cut(s) | 169, 270, 328, 485 |
| Ama87I | CYCGRG | 1 cut(s) | 392 |
| AoxI | GGCC | 1 cut(s) | 177 |
| ApaI | GGGCCC | 1 cut(s) | 181 |
| ApeKI | GCWGC | 2 cut(s) | 325, 388 |
| ApoI | RAATTY | 4 cut(s) | 25, 154, 499, 532 |
| AseI | ATTAAT | 1 cut(s) | 123 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 477 |
| AspS9I | GGNCC | 3 cut(s) | 66, 177, 178 |
| AsuHPI | GGTGA | 1 cut(s) | 580 |
| AvaI | CYCGRG | 1 cut(s) | 392 |
| AvaII | GGWCC | 1 cut(s) | 66 |
| BaeGI | GKGCMC | 1 cut(s) | 181 |
| BanII | GRGCYC | 1 cut(s) | 181 |
| BbvI | GCAGC | 2 cut(s) | 337, 375 |
| BccI | CCATC | 2 cut(s) | 57, 236 |
| BfmI | CTRYAG | 1 cut(s) | 333 |
| BglII | AGATCT | 2 cut(s) | 188, 695 |
| BisI | GCNGC | 2 cut(s) | 326, 389 |
| BlsI | GCNGC | 2 cut(s) | 327, 390 |
| Bme18I | GGWCC | 1 cut(s) | 66 |
| BmeT110I | CYCGRG | 1 cut(s) | 392 |
| BmgT120I | GGNCC | 3 cut(s) | 66, 177, 178 |
| BmiI | GGNNCC | 4 cut(s) | 68, 178, 179, 408 |
| BmsI | GCATC | 3 cut(s) | 255, 357, 387 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 536, 568 |
| BpmI | CTGGAG | 2 cut(s) | 26, 450 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 193, 223 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 192, 321 |
| Bse1I | ACTGG | 1 cut(s) | 433 |
| Bse3DI | GCAATG | 1 cut(s) | 591 |
| BseGI | GGATG | 1 cut(s) | 444 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 192, 321 |
| BseMI | GCAATG | 1 cut(s) | 591 |
| BseMII | CTCAG | 2 cut(s) | 294, 576 |
| BseNI | ACTGG | 1 cut(s) | 433 |
| BseRI | GAGGAG | 2 cut(s) | 23, 177 |
| BseSI | GKGCMC | 1 cut(s) | 181 |
| BseXI | GCAGC | 2 cut(s) | 337, 375 |
| BshFI | GGCC | 1 cut(s) | 179 |
| BsiHKCI | CYCGRG | 1 cut(s) | 392 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 192, 321 |
| BsmI | GAATGC | 1 cut(s) | 61 |
| BsnI | GGCC | 1 cut(s) | 179 |
| BsoBI | CYCGRG | 1 cut(s) | 392 |
| Bsp120I | GGGCCC | 1 cut(s) | 177 |
| Bsp1286I | GDGCHC | 1 cut(s) | 181 |
| Bsp143I | GATC | 2 cut(s) | 188, 695 |
| BspACI | CCGC | 1 cut(s) | 221 |
| BspANI | GGCC | 1 cut(s) | 179 |
| BspCNI | CTCAG | 2 cut(s) | 295, 577 |
| BspLI | GGNNCC | 4 cut(s) | 68, 178, 179, 408 |
| BsrDI | GCAATG | 1 cut(s) | 591 |
| BsrI | ACTGG | 1 cut(s) | 433 |
| BssMI | GATC | 2 cut(s) | 188, 695 |
| Bst4CI | ACNGT | 1 cut(s) | 496 |
| Bst6I | CTCTTC | 3 cut(s) | 128, 304, 559 |
| BstC8I | GCNNGC | 1 cut(s) | 362 |
| BstDEI | CTNAG | 2 cut(s) | 303, 585 |
| BstF5I | GGATG | 1 cut(s) | 444 |
| BstKTI | GATC | 2 cut(s) | 191, 698 |
| BstMBI | GATC | 2 cut(s) | 188, 695 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 397, 667 |
| BstNSI | RCATGY | 1 cut(s) | 584 |
| BstSFI | CTRYAG | 1 cut(s) | 333 |
| BstSLI | GKGCMC | 1 cut(s) | 181 |
| BstV1I | GCAGC | 2 cut(s) | 337, 375 |
| BstX2I | RGATCY | 2 cut(s) | 188, 695 |
| BstYI | RGATCY | 2 cut(s) | 188, 695 |
| BsuRI | GGCC | 1 cut(s) | 179 |
| BtsCI | GGATG | 1 cut(s) | 444 |
| BtsI | GCAGTG | 1 cut(s) | 46 |
| BtsIMutI | CAGTG | 1 cut(s) | 46 |
| Cac8I | GCNNGC | 1 cut(s) | 362 |
| Cfr13I | GGNCC | 3 cut(s) | 66, 177, 178 |
| Csp6I | GTAC | 1 cut(s) | 465 |
| CviAII | CATG | 2 cut(s) | 274, 581 |
| CviJI | RGCY | 6 cut(s) | 169, 179, 270, 328, 338, 485 |
| CviKI_1 | RGCY | 6 cut(s) | 169, 179, 270, 328, 338, 485 |
| CviQI | GTAC | 1 cut(s) | 465 |
| DdeI | CTNAG | 2 cut(s) | 303, 585 |
| DpnI | GATC | 2 cut(s) | 190, 697 |
| DpnII | GATC | 2 cut(s) | 188, 695 |
| Eam1104I | CTCTTC | 3 cut(s) | 128, 304, 559 |
| EarI | CTCTTC | 3 cut(s) | 128, 304, 559 |
| EciI | GGCGGA | 1 cut(s) | 236 |
| Eco24I | GRGCYC | 1 cut(s) | 181 |
| Eco32I | GATATC | 1 cut(s) | 353 |
| Eco47I | GGWCC | 1 cut(s) | 66 |
| Eco57I | CTGAAG | 2 cut(s) | 191, 650 |
| Eco88I | CYCGRG | 1 cut(s) | 392 |
| EcoO109I | RGGNCCY | 1 cut(s) | 177 |
| EcoRV | GATATC | 1 cut(s) | 353 |
| EcoT38I | GRGCYC | 1 cut(s) | 181 |
| FaeI | CATG | 2 cut(s) | 277, 584 |
| FaiI | YATR | 9 cut(s) | 264, 275, 335, 348, 376, 378, 582, 672, 687 |
| FatI | CATG | 2 cut(s) | 273, 580 |
| Fnu4HI | GCNGC | 2 cut(s) | 326, 389 |
| FokI | GGATG | 1 cut(s) | 451 |
| FriOI | GRGCYC | 1 cut(s) | 181 |
| Fsp4HI | GCNGC | 2 cut(s) | 326, 389 |
| GluI | GCNGC | 2 cut(s) | 326, 389 |
| GsuI | CTGGAG | 2 cut(s) | 26, 450 |
| HaeIII | GGCC | 1 cut(s) | 179 |
| Hin1II | CATG | 2 cut(s) | 277, 584 |
| HindIII | AAGCTT | 1 cut(s) | 268 |
| HphI | GGTGA | 1 cut(s) | 580 |
| Hpy166II | GTNNAC | 1 cut(s) | 571 |
| Hpy188I | TCNGA | 4 cut(s) | 103, 295, 304, 550 |
| Hpy188III | TCNNGA | 3 cut(s) | 186, 239, 394 |
| Hpy8I | GTNNAC | 1 cut(s) | 571 |
| HpyAV | CCTTC | 4 cut(s) | 81, 166, 420, 457 |
| HpyCH4III | ACNGT | 1 cut(s) | 496 |
| HpyCH4V | TGCA | 5 cut(s) | 59, 229, 505, 601, 661 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 397, 667 |
| HpyF3I | CTNAG | 2 cut(s) | 303, 585 |
| Hsp92II | CATG | 2 cut(s) | 277, 584 |
| Kzo9I | GATC | 2 cut(s) | 188, 695 |
| LpnPI | CCDG | 7 cut(s) | 199, 215, 291, 366, 414, 453, 551 |
| Lsp1109I | GCAGC | 2 cut(s) | 337, 375 |
| LweI | GCATC | 3 cut(s) | 255, 357, 387 |
| MaeIII | GTNAC | 1 cut(s) | 424 |
| MalI | GATC | 2 cut(s) | 190, 697 |
| MboI | GATC | 2 cut(s) | 188, 695 |
| MboII | GAAGA | 5 cut(s) | 145, 291, 546, 690, 693 |
| MflI | RGATCY | 2 cut(s) | 188, 695 |
| MhlI | GDGCHC | 1 cut(s) | 181 |
| MluCI | AATT | 7 cut(s) | 25, 97, 154, 499, 532, 540, 647 |
| MlyI | GAGTC | 4 cut(s) | 290, 545, 554, 652 |
| MmeI | TCCRAC | 1 cut(s) | 119 |
| MnlI | CCTC | 7 cut(s) | 73, 155, 197, 211, 298, 615, 627 |
| MroXI | GAANNNNTTC | 1 cut(s) | 477 |
| MseI | TTAA | 4 cut(s) | 14, 47, 96, 123 |
| Mva1269I | GAATGC | 1 cut(s) | 61 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 397, 667 |
| NdeII | GATC | 2 cut(s) | 188, 695 |
| NlaIII | CATG | 2 cut(s) | 277, 584 |
| NlaIV | GGNNCC | 4 cut(s) | 68, 178, 179, 408 |
| NspI | RCATGY | 1 cut(s) | 584 |
| PaeR7I | CTCGAG | 1 cut(s) | 392 |
| PctI | GAATGC | 1 cut(s) | 61 |
| PdmI | GAANNNNTTC | 1 cut(s) | 477 |
| PfeI | GAWTC | 7 cut(s) | 83, 235, 290, 478, 488, 508, 653 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 192 |
| PkrI | GCNGC | 2 cut(s) | 327, 390 |
| PleI | GAGTC | 4 cut(s) | 290, 545, 553, 651 |
| PpsI | GAGTC | 4 cut(s) | 290, 545, 553, 651 |
| PshBI | ATTAAT | 1 cut(s) | 123 |
| PspN4I | GGNNCC | 4 cut(s) | 68, 178, 179, 408 |
| PspOMI | GGGCCC | 1 cut(s) | 177 |
| PspPI | GGNCC | 3 cut(s) | 66, 177, 178 |
| PsuI | RGATCY | 2 cut(s) | 188, 695 |
| RsaI | GTAC | 1 cut(s) | 466 |
| RsaNI | GTAC | 1 cut(s) | 465 |
| SaqAI | TTAA | 4 cut(s) | 14, 47, 96, 123 |
| SatI | GCNGC | 2 cut(s) | 326, 389 |
| Sau3AI | GATC | 2 cut(s) | 188, 695 |
| Sau96I | GGNCC | 3 cut(s) | 66, 177, 178 |
| SchI | GAGTC | 4 cut(s) | 290, 545, 554, 652 |
| SduI | GDGCHC | 1 cut(s) | 181 |
| SetI | ASST | 7 cut(s) | 171, 208, 272, 330, 487, 576, 638 |
| SfaNI | GCATC | 3 cut(s) | 255, 357, 387 |
| SfcI | CTRYAG | 1 cut(s) | 333 |
| Sfr274I | CTCGAG | 1 cut(s) | 392 |
| SinI | GGWCC | 1 cut(s) | 66 |
| SlaI | CTCGAG | 1 cut(s) | 392 |
| SmlI | CTYRAG | 1 cut(s) | 392 |
| SmoI | CTYRAG | 1 cut(s) | 392 |
| Sse9I | AATT | 7 cut(s) | 25, 97, 154, 499, 532, 540, 647 |
| SsiI | CCGC | 1 cut(s) | 221 |
| SspI | AATATT | 1 cut(s) | 616 |
| TaaI | ACNGT | 1 cut(s) | 496 |
| TaqI | TCGA | 1 cut(s) | 393 |
| TasI | AATT | 7 cut(s) | 25, 97, 154, 499, 532, 540, 647 |
| TfiI | GAWTC | 7 cut(s) | 83, 235, 290, 478, 488, 508, 653 |
| Tru1I | TTAA | 4 cut(s) | 14, 47, 96, 123 |
| Tru9I | TTAA | 4 cut(s) | 14, 47, 96, 123 |
| TscAI | CASTG | 1 cut(s) | 46 |
| TseI | GCWGC | 2 cut(s) | 325, 388 |
| TspDTI | ATGAA | 2 cut(s) | 36, 262 |
| TspRI | CASTG | 1 cut(s) | 46 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 192 |
| VpaK11BI | GGWCC | 1 cut(s) | 66 |
| VspI | ATTAAT | 1 cut(s) | 123 |
| XapI | RAATTY | 4 cut(s) | 25, 154, 499, 532 |
| XceI | RCATGY | 1 cut(s) | 584 |
| XhoI | CTCGAG | 1 cut(s) | 392 |
| XmnI | GAANNNNTTC | 1 cut(s) | 477 |