MD02G1055500.v1.1

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
4480091 .. 4484423
4333 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1055500.v1.1.491

Sequence Viewer

Length: 3273 bp
ATGGAGTGCAGATACAAACTGGGGCGACGTGTTTTGCCAATATTCTATCATGTTGATCCTTCACATGTTAGGAAGCAGAACGGAGATTTAGCTCAAGCATTTCAGAAGCACGAAGAGGGCATCCGTGAAGAAAAAGATGACAAGGAACGTGGAGCTAAACAACAAAGGGTAAAGCAATGGAGAAAGGCTCTTACAGAAGCTGCAAATTTGTCTGGCCAACATGTTCAAATCACAGACAATGGGCGCGAAGCAAAGCTTATTAGAGAAATTGTTGGCATGATCATTACGGAATGGCTTCCGAGCGCAAACAAATTAAATGTGGCCAAGCACCCAGTTGGAATCAATTCTCGCATTCAAGATATTATCAGTTATCTTTCAGGTGGTGGATCAAATGACGTTGTCATGGTTGGAATTTGGGGGATGGGTGGATTGGGTAAAACAACAGCTGCCAAAGCCATTTATAACCAAATTCATCATAAGTTCCAATTCAAAAGTTTCCTTGCCAACGTTAGTGCATATGATCTGGTTGATTTGCAAGGAAAACTTGTTTCTGACATCTTGAAACAGACCGAGTCTAAGATAACCAGTGTTGATAGAGGTATCAGTTTGATAAAAAATCATCTCCAACGTAGAAGTGTACTTGTCATTATTGACAATGTAAACAAAGTGGAACAGCTAAATGCAATAGCTGGAAATCGTGATTGGTTTGGCCCAGGAAGTAGAATTATCATAACGACACGAGATGAACGTTTACTAAAGCAAGTGAACATGAAAGTGGACAAGACATATCCACTTAAGGAAATGAATGAAGAAGAAGCTCTGAAGCTCTTTAGTTGGCATGCCTTTGGGAATAGTTGGCCTGATGAAGGATATCTTGAACTATCAAAAGAGGTTGTTTTTTACTGTGGTGGTTTGCCACTAGCCCTTGAAGTTTTAGGTTCTTCTATGATTGAAAGAACCCCAACAGAGTGGAAAAGTCAGTCGGAGAAATTGAAAAAATTTCCTGATGAAGGAATAATGAAAGCGCTAAGAGTAAGCTTTGAAGGGCTAGATCCTGCACAGAAAGATATATTACTTGACATATCTTGTTTCTTTATTGGATGGGATAAGGACTATGTCGCAAAAATATTAGATGGATGTGAGTTTTTTGCAACAGCAGGAATCAGTGACCTTCGTGAACGATGCCTTGTAACTGTTGAACACAACAGGTTGAATATGCATGATTTGCTTCGAGAAATGGCCAAATTAATCATTTCTGAAAAATTTCCTCGTCACCCTGGAAAATGGAGTAGGTTGTGGAACCGTCAAGAGGTCACTAAAGTATTGAGAGATAACTCTGGAACTGAAGAAGTTGAAGGACTTGCTCTACATTTCCCTGATCCTTGGTTTAAAAGCTCCAAAGAGTCTAGTTGTTTCCGTACAGAAGCATTTGCCAATATGAAGAAACTGAGACTGCTCACGCTCATGAAGGTGCAGCTCAATGGAGAATACAAACATCTTTCCAAAGAGTTAATATGGTTGCGTTGGAATGGATGCCGTTTAAAGTCCATACCTGATGACTTCTTTGATCAACCAAGAGCACTAGTTATTTTAGAGATAACGTTTAGCAGACTGGTACAAGTTTGGGAGGGCTCCAAGTCGCTTGGAAACTTGAAAATCCTTAATCTCAGTTGTTGCGATGACTTGAGAAAATCACCAGACTTTTCAAATGTCCCAAATCTTGAAGAGTTGATATTGCAAGGGTGTAAGAGTTTGTCCGAGATTCACCCCTCCATTGTTCATCTTAGAAAACTTTCTTTGGTGAACCTCAAAGGCTGCAAGAATCTTATTTCTCTTCCTGGGGATTTCTACAAGTCCAAATCCGTTCAGACTCTTGTTCTTGATTATTGTTCGCAATTCAGTGAACTGCCCAAGGATTTAGGGAAGATGATATCATTGAGAGTACTTAAAGCATCTGCCACAGCCATAAGACAAGTACCACGTTCCATAGTAAGGTTGAAGAATCTCACTCATTTATCTCTAGTGGATGTGGGATCGGAGTTTCATTTGCGATTTCCCTATTCGGTGTTTTCTTTGCGATTTCCCGATTCGTTACATGGCTTAGACTCTTTAAGAAATTTAGATCTCTCAAACAATGATTTTGATACCCTACCCAGCCTCAGTGGTCTTTCAAAGCTTGAAAGTTTGCAGTTAAGTAACTGCCATAACCTTCATACCCTACCCAGCCTCAGTGGTCTTTCAAAGCTTGAAAGTTTGCAGTTAAGTAACTGTCGTAACCTTCATACCCTACCCAGCCTCAGTGGTCTTTCAAAGCTTGAAAGTTTGCAGTTAAGTAACTGCCGTAACCTTCATACCCTACCCAGCCTCAGTGGTCTTTCAAAGCTTGAAAGTTTGCAGTTAAGTAACTGCCATTACCTTCATACCCTACCCAGCCTGAGTGATCTTTCAAAGCTCGAAAGTCTCTGGTTACATCATTGCTTCGGGCTTCCTACAATTTCTGATTTGCCAACGAATTTAAAATTTCTGGATGCGTCTAATTGCCTTCATTTGGTAACAATGCCCAATTTTTCGAAAATGTTGAATATGAGAGAACTGATTGTATGTGATTCAGACGCACTCACTGAGGTTCCAGACTTGGATAAGTCATTATACTCCATGACATGGATTGATATGAGGGACTGCCCCAAACTCACAGATGATTTTAAGAGGAACATCCTAAAGGGATGGACTTCTTGCGGATATGGTGGCATTTTTCTCAATGGAAATTATGTTCCTGATTGGTTCGAGTTTGTCAACAACCGTTATAAAGTCCGTTTTGATATCCCCCCGAGTGATGGTCGTAATTTTGAAGGGCTGACTCTGTTATGCTTTTATACCTCAGATCTTCATCAGTCAAGCTCTCATATCAGATGTAAAGGTGGTCATCCTCGTGTCAGTATTGATATAAATAATACCAAGCGTACTAGGTGGCAGACCTGCATAGGCAAGGAGGATTGGGTTATAAAAATGCGCAAATTTGAAGAATGTTTTCTTTGGCAGGGACAAATATCAAACGGTAAGCTCAATTTGCAAAGTGGGGATAAAGTTGATATAACTTTTGAAATGCCAGAGATGGGCTATAAAAATTATTATCCGACAATTCAGGGAACAGGGGTTAATCTAGTATGGGACAAACCTATGAAGGAAAATATCCACGATTTTGATGGTGATGGTAGGTTTTTGATCCAGAGGCACAGCCAAGGTGGTGATGCATCGTCATCATCACATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1091

Amino Acids

123.98

Weight (kDa)

8.6

Isoelectric Point (pI)

40.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 1 - 100 5.3e-14 TIR domain
NB-ARC PF00931 118 - 283 5.7e-19 NB-ARC domain
WHD_ROQ1 PF23282 354 - 420 1.5e-10 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 566 - 677 3.3e-06 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 697 - 757 8.4e-06 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36930 AT5G36930 AT5G36930 AT5G36930
fragaria_vesca FvH4_3g45361 FvH4_3g45380 FvH4_5g21061 FvH4_5g21062 FvH4_5g21063 FvH4_5g32050 FvH4_5g32970 FvH4_5g32990 FvH4_5g34190 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34211 FvH4_5g34240 FvH4_5g34250
malus_domestica MD00G1011700.v1.1 MD00G1026100.v1.1 MD00G1026500.v1.1 MD00G1027000.v1.1 MD00G1027100.v1.1 MD00G1027700.v1.1 MD00G1027800.v1.1 MD00G1028000.v1.1 MD00G1220000.v1.1 MD02G1024400.v1.1 MD02G1024800.v1.1 MD02G1026000.v1.1 MD02G1026100.v1.1 MD02G1031800.v1.1 MD02G1038500.v1.1 MD02G1038700.v1.1 MD02G1039200.v1.1 MD02G1040600.v1.1 MD02G1040900.v1.1 MD02G1041200.v1.1 MD02G1041300.v1.1 MD02G1041700.v1.1 MD02G1042000.v1.1 MD02G1043800.v1.1 MD02G1043900.v1.1 MD02G1044300.v1.1 MD02G1045200.v1.1 MD02G1045300.v1.1 MD02G1051200.v1.1 MD02G1052200.v1.1 MD02G1052800.v1.1 MD02G1053100.v1.1 MD02G1053600.v1.1 MD02G1055500.v1.1 MD02G1063300.v1.1 MD02G1063400.v1.1 MD02G1063800.v1.1 MD02G1306500.v1.1 MD02G1306600.v1.1 MD02G1306700.v1.1 MD02G1306900.v1.1 MD02G1307200.v1.1 MD04G1011700.v1.1 MD05G1315400.v1.1 MD05G1316000.v1.1 MD05G1316700.v1.1 MD05G1317000.v1.1 MD05G1317300.v1.1 MD05G1317600.v1.1 MD05G1317700.v1.1 MD07G1102800.v1.1 MD07G1238200.v1.1 MD08G1175900.v1.1 MD08G1203600.v1.1 MD09G1024200.v1.1 MD09G1039600.v1.1 MD09G1044800.v1.1 MD09G1045100.v1.1 MD10G1038700.v1.1 MD10G1039000.v1.1 MD10G1039200.v1.1 MD10G1040000.v1.1 MD10G1040200.v1.1 MD10G1040600.v1.1 MD10G1040800.v1.1 MD10G1297300.v1.1 MD12G1247500.v1.1 MD12G1247900.v1.1 MD12G1248300.v1.1 MD12G1248800.v1.1 MD15G1103700.v1.1 MD15G1103800.v1.1 MD15G1104000.v1.1 MD15G1179600.v1.1 MD15G1182500.v1.1 MD16G1068200.v1.1 MD16G1068300.v1.1 MD17G1024600.v1.1 MD17G1024700.v1.1 MD17G1025000.v1.1 MD17G1025900.v1.1
prunus_persica Prupe.1G539800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G557100_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557300_v2.0.a1
pyrus_communis pycom02g02080 pycom02g02090 pycom02g02110 pycom02g03220 pycom02g03260 pycom02g03370 pycom02g03390 pycom02g03410 pycom02g03420 pycom02g03450 pycom02g03500 pycom02g03730 pycom02g03770 pycom02g04400 pycom02g04410 pycom02g04430 pycom02g04450 pycom02g04460 pycom02g04490 pycom02g05200 pycom02g25710 pycom02g25750 pycom02g25790 pycom02g25810 pycom02g25830 pycom04g00920 pycom04g00930 pycom04g00940 pycom05g29300 pycom05g29310 pycom05g29380 pycom05g29410 pycom07g06310 pycom07g21420 pycom08g15070 pycom08g17540 pycom08g17560 pycom08g17570 pycom10g02670 pycom10g02680 pycom10g02700 pycom10g02770 pycom10g02790 pycom10g02800 pycom10g02810 pycom10g25020 pycom10g25030 pycom10g25050 pycom10g25080 pycom111g01990 pycom111g02000 pycom111g02030 pycom111g02040 pycom111g02050 pycom111g02060 pycom12g22710 pycom12g22720 pycom12g22730 pycom12g22740 pycom12g22750 pycom12g22770 pycom12g22780 pycom12g22790 pycom12g22800 pycom12g22810 pycom12g22830 pycom12g22840 pycom12g22860 pycom15g09440 pycom15g09480 pycom15g16120 pycom15g32380 pycom16g05970 pycom17g02100
rosa_chinensis RchiOBHm_Chr2g0144661 RchiOBHm_Chr4g0407491 RchiOBHm_Chr4g0407501 RchiOBHm_Chr4g0412381 RchiOBHm_Chr7g0208191 RchiOBHm_Chr7g0208201 RchiOBHm_Chr7g0208211 RchiOBHm_Chr7g0208221 RchiOBHm_Chr7g0228071 RchiOBHm_Chr7g0228121 RchiOBHm_Chr7g0230971 RchiOBHm_Chr7g0230981 RchiOBHm_Chr7g0233901 RchiOBHm_Chr7g0233951 RchiOBHm_Chr7g0233961 RchiOBHm_Chr7g0233991 RchiOBHm_Chr7g0234021 RchiOBHm_Chr7g0234151 RchiOBHm_Chr7g0234161 RchiOBHm_Chr7g0234241 RchiOBHm_Chr7g0234501 RchiOBHm_Chr7g0234641 RchiOBHm_Chr7g0234771 RchiOBHm_Chr7g0234781 RchiOBHm_Chr7g0234991 RchiOBHm_Chr7g0241291 RchiOBHm_Chr7g0241301
rosa_laevigata RLG00000001186 RLG00000001187 RLG00000001212 RLG00000001226 RLG00000001233 RLG00000001590 RLG00000003242 RLG00000003243 RLG00000003249 RLG00000008688 RLG00000008690
rosa_multiflora Rmu_co7966574.1_g000001 Rmu_co8120830.1_g000001 Rmu_co8142226.1_g000001 Rmu_co8293083.1_g000001 Rmu_co8351227.1_g000001 Rmu_co8380159.1_g000001 Rmu_co8456505.1_g000001 Rmu_sc0000676.1_g000025 Rmu_sc0000706.1_g000018 Rmu_sc0000706.1_g000040 Rmu_sc0000740.1_g000029 Rmu_sc0000740.1_g000032 Rmu_sc0000740.1_g000037 Rmu_sc0000740.1_g000040 Rmu_sc0000762.1_g000003 Rmu_sc0000762.1_g000019 Rmu_sc0000762.1_g000034 Rmu_sc0000762.1_g000069 Rmu_sc0000892.1_g000001 Rmu_sc0000945.1_g000040 Rmu_sc0001913.1_g000037 Rmu_sc0001913.1_g000041 Rmu_sc0001913.1_g000049 Rmu_sc0002775.1_g000017 Rmu_sc0002775.1_g000018 Rmu_sc0002775.1_g000020 Rmu_sc0002775.1_g000021 Rmu_sc0002775.1_g000022 Rmu_sc0002775.1_g000025 Rmu_sc0002775.1_g000026 Rmu_sc0002775.1_g000028 Rmu_sc0002775.1_g000030 Rmu_sc0004858.1_g000002 Rmu_sc0004864.1_g000022 Rmu_sc0005038.1_g000023 Rmu_sc0005840.1_g000014 Rmu_sc0006724.1_g000003 Rmu_sc0006824.1_g000005 Rmu_sc0007869.1_g000003 Rmu_sc0007869.1_g000005 Rmu_sc0007869.1_g000008 Rmu_sc0008646.1_g000007 Rmu_sc0009637.1_g000009 Rmu_sc0010500.1_g000002 Rmu_sc0010500.1_g000012 Rmu_sc0012403.1_g000025 Rmu_sc0013768.1_g000025 Rmu_sc0015625.1_g000001 Rmu_sc0019715.1_g000001 Rmu_sc0021133.1_g000002 Rmu_sc0021904.1_g000001 Rmu_sc0021904.1_g000003 Rmu_sc0021904.1_g000004 Rmu_sc0022054.1_g000001 Rmu_sc0026025.1_g000001 Rmu_sc0036828.1_g000002 Rmu_sc0041808.1_g000001 Rmu_ssc0000012.1_g000001
rosa_roxburghii Rroxscaffold_3G00226370 Rroxscaffold_3G00226860 Rroxscaffold_3G00226900 Rroxscaffold_3G00226930 Rroxscaffold_3G00226940 Rroxscaffold_3G00226970 Rroxscaffold_3G00226980 Rroxscaffold_3G00231530 Rroxscaffold_3G00237090 Rroxscaffold_3G00250760 Rroxscaffold_3G00250800
rosa_rugosa Rorug04G0082300 Rorug07G0101800 Rorug07G0102000 Rorug07G0102100 Rorug07G0221200 Rorug07G0245700 Rorug07G0245700 Rorug07G0245700 Rorug07G0263900 Rorug07G0264000 Rorug07G0264000 Rorug07G0264500 Rorug07G0282900 Rorug07G0282900 Rorug07G0283100 Rorug07G0283200.1 Rorug07G0283300 Rorug07G0283900 Rorug07G0284000 Rorug07G0284100 Rorug07G0284300 Rorug07G0284400 Rorug07G0284500 Rorug07G0285000 Rorug07G0285200 Rorug07G0285300 Rorug07G0285500 Rorug07G0286800 Rorug07G0286900 Rorug07G0287100 Rorug07G0287200
rosa_samantha Rh7AG236100 Rh7AG236200 Rh7AG236300 Rh7AG440000 Rh7AG440100 Rh7BG411900 Rh7BG412000 Rh7BG412600 Rh7CG251300 Rh7CG417700 Rh7CG460100 Rh7DG242100 Rh7DG242200 Rh7DG242300 Rh7DG429300
rosa_wichuraiana Rw0G005070 Rw0G010780 Rw0G012530 Rw7G020110 Rw7G020160 Rw7G020170 Rw7G033210 Rw7G033230 Rw7G033250 Rw7G034540 Rw7G035150 Rw7G036190 Rw7G036210 Rw7G036260 Rw7G036270 Rw7G036290 Rw7G036300 Rw7G036310 Rw7G036350 Rw7G036360 Rw7G036440 Rw7G036510 Rw7G036530 Rw7G036570 Rw7G036590 Rw7G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 462, 2805, 3002
Acc16I TGCGCA 1 cut(s) 3011
Acc36I ACCTGC 1 cut(s) 2984
AccB7I CCANNNNNTGG 1 cut(s) 2661
AccII CGCG 1 cut(s) 246
AciI CCGC 1 cut(s) 2736
AclI AACGTT 3 cut(s) 507, 748, 1601
AclWI GGATC 6 cut(s) 50, 394, 1046, 1373, 2041, 3217
AcoI YGGCCR 3 cut(s) 214, 321, 1239
AcsI RAATTY 9 cut(s) 205, 411, 468, 998, 1262, 2116, 2512, 2519, 3014
AcuI CTGAAG 2 cut(s) 842, 1365
AfaI GTAC 6 cut(s) 639, 1420, 1617, 1944, 1977, 2962
AfeI AGCGCT 1 cut(s) 1026
AfiI CCNNNNNNNGG 8 cut(s) 866, 1010, 1309, 1992, 2548, 2661, 2834, 3113
AflII CTTAAG 1 cut(s) 794
AflIII ACRYGT 3 cut(s) 28, 64, 220
AhlI ACTAGT 1 cut(s) 1582
AjiI CACGTC 1 cut(s) 29
AjnI CCWGG 3 cut(s) 712, 1276, 1837
AjuI GAANNNNNNNTTGG 2 cut(s) 685, 717
AloI GAACNNNNNNTCC 2 cut(s) 2754, 2786
Alw21I GWGCWC 1 cut(s) 1582
Alw26I GTCTC 2 cut(s) 1444, 2465
AlwI GGATC 6 cut(s) 50, 394, 1046, 1373, 2041, 3217
AlwNI CAGNNNCTG 1 cut(s) 200
Ama87I CYCGRG 1 cut(s) 2827
Aor51HI AGCGCT 1 cut(s) 1026
AoxI GGCC 5 cut(s) 214, 321, 709, 857, 1239
ApeKI GCWGC 4 cut(s) 200, 446, 1474, 1815
ApoI RAATTY 9 cut(s) 205, 411, 468, 998, 1262, 2116, 2512, 2519, 3014
AseI ATTAAT 1 cut(s) 1247
Asp700I GAANNNNTTC 5 cut(s) 294, 343, 1263, 1792, 3027
AspLEI GCGC 4 cut(s) 246, 305, 1027, 3012
AspS9I GGNCC 1 cut(s) 710
AsuHPI GGTGA 6 cut(s) 1265, 1686, 1757, 1813, 3218, 3257
AsuII TTCGAA 1 cut(s) 2570
AvaI CYCGRG 1 cut(s) 2827
BalI TGGCCA 3 cut(s) 216, 323, 1241
BanII GRGCYC 1 cut(s) 1634
BauI CACGAG 2 cut(s) 738, 2928
Bbv12I GWGCWC 1 cut(s) 1582
BbvI GCAGC 4 cut(s) 187, 433, 1486, 1802
BccI CCATC 8 cut(s) 415, 1095, 1127, 2718, 2828, 3106, 3197, 3203
BceAI ACGGC 2 cut(s) 1521, 2325
BciT130I CCWGG 3 cut(s) 714, 1278, 1839
BclI TGATCA 2 cut(s) 279, 1567
BcoDI GTCTC 2 cut(s) 1444, 2465
BcuI ACTAGT 1 cut(s) 1582
BfaI CTAG 7 cut(s) 920, 1049, 1407, 1583, 2021, 2964, 3161
BfoI RGCGCY 1 cut(s) 1028
BfrI CTTAAG 1 cut(s) 794
BfuAI ACCTGC 1 cut(s) 2984
BglII AGATCT 2 cut(s) 2122, 2881
BisI GCNGC 4 cut(s) 201, 447, 1475, 1816
BlsI GCNGC 4 cut(s) 202, 448, 1476, 1817
BmcAI AGTACT 1 cut(s) 1944
Bme1390I CCNGG 3 cut(s) 714, 1278, 1839
BmeT110I CYCGRG 1 cut(s) 2827
BmgBI CACGTC 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 710
BmiI GGNNCC 3 cut(s) 1301, 1633, 2628
BmrFI CCNGG 3 cut(s) 714, 1278, 1839
BmrI ACTGGG 2 cut(s) 29, 326
BmsI GCATC 7 cut(s) 129, 1172, 1523, 1961, 2518, 3238, 3260
BmuI ACTGGG 2 cut(s) 29, 326
BplI GAGNNNNNCTC 2 cut(s) 172, 204
Bpu14I TTCGAA 1 cut(s) 2570
BpuEI CTTGAG 2 cut(s) 78, 1705
BsaBI GATNNNNATC 1 cut(s) 2886
BsaJI CCNNGG 6 cut(s) 712, 1276, 1382, 1838, 1911, 3238
Bsc4I CCNNNNNNNGG 8 cut(s) 866, 1010, 1309, 1992, 2548, 2661, 2834, 3113
Bse1I ACTGG 4 cut(s) 24, 332, 585, 1617
Bse3DI GCAATG 2 cut(s) 182, 2473
Bse8I GATNNNNATC 1 cut(s) 2886
BseBI CCWGG 3 cut(s) 714, 1278, 1839
BseDI CCNNGG 6 cut(s) 712, 1276, 1382, 1838, 1911, 3238
BseJI GATNNNNATC 1 cut(s) 2886
BseLI CCNNNNNNNGG 8 cut(s) 866, 1010, 1309, 1992, 2548, 2661, 2834, 3113
BseMI GCAATG 2 cut(s) 182, 2473
BseMII CTCAG 9 cut(s) 1439, 1681, 2173, 2242, 2311, 2380, 2426, 2613, 2892
BseNI ACTGG 4 cut(s) 24, 332, 585, 1617
BseXI GCAGC 4 cut(s) 187, 433, 1486, 1802
BseYI CCCAGC 5 cut(s) 2153, 2222, 2291, 2360, 2429
BsgI GTGCAG 3 cut(s) 28, 1041, 1493
Bsh1236I CGCG 1 cut(s) 246
BshFI GGCC 5 cut(s) 216, 323, 711, 859, 1241
BsiHKAI GWGCWC 1 cut(s) 1582
BsiHKCI CYCGRG 1 cut(s) 2827
BslFI GGGAC 4 cut(s) 1697, 2690, 3054, 3182
BslI CCNNNNNNNGG 8 cut(s) 866, 1010, 1309, 1992, 2548, 2661, 2834, 3113
BsmAI GTCTC 2 cut(s) 1444, 2465
BsmFI GGGAC 4 cut(s) 1697, 2690, 3054, 3182
BsmI GAATGC 1 cut(s) 351
BsnI GGCC 5 cut(s) 216, 323, 711, 859, 1241
BsoBI CYCGRG 1 cut(s) 2827
Bsp119I TTCGAA 1 cut(s) 2570
Bsp1286I GDGCHC 2 cut(s) 1582, 1634
BspACI CCGC 1 cut(s) 2736
BspANI GGCC 5 cut(s) 216, 323, 711, 859, 1241
BspCNI CTCAG 9 cut(s) 1440, 1680, 2172, 2241, 2310, 2379, 2427, 2614, 2891
BspFNI CGCG 1 cut(s) 246
BspHI TCATGA 1 cut(s) 1464
BspLI GGNNCC 3 cut(s) 1301, 1633, 2628
BspMI ACCTGC 1 cut(s) 2984
BspPI GGATC 6 cut(s) 50, 394, 1046, 1373, 2041, 3217
BspT104I TTCGAA 1 cut(s) 2570
BspTI CTTAAG 1 cut(s) 794
BsrDI GCAATG 2 cut(s) 182, 2473
BsrI ACTGG 4 cut(s) 24, 332, 585, 1617
BssECI CCNNGG 6 cut(s) 712, 1276, 1382, 1838, 1911, 3238
BssSI CACGAG 2 cut(s) 738, 2928
BssT1I CCWWGG 3 cut(s) 1382, 1911, 3238
Bst2BI CACGAG 2 cut(s) 738, 2928
Bst2UI CCWGG 3 cut(s) 714, 1278, 1839
Bst4CI ACNGT 6 cut(s) 905, 1195, 1304, 2270, 2801, 3056
Bst6I CTCTTC 3 cut(s) 108, 1719, 1839
BstAFI CTTAAG 1 cut(s) 794
BstAPI GCANNNNNTGC 1 cut(s) 1225
BstBI TTCGAA 1 cut(s) 2570
BstC8I GCNNGC 1 cut(s) 840
BstENI CCTNNNNNAGG 2 cut(s) 864, 1008
BstFNI CGCG 1 cut(s) 246
BstH2I RGCGCY 1 cut(s) 1028
BstHHI GCGC 4 cut(s) 246, 305, 1027, 3012
BstMAI GTCTC 2 cut(s) 1444, 2465
BstMWI GCNNNNNNNGC 3 cut(s) 452, 1225, 3067
BstNI CCWGG 3 cut(s) 714, 1278, 1839
BstNSI RCATGY 4 cut(s) 68, 224, 842, 3269
BstSCI CCNGG 3 cut(s) 712, 1276, 1837
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 4 cut(s) 187, 433, 1486, 1802
BstX2I RGATCY 3 cut(s) 1051, 2122, 2881
BstXI CCANNNNNNTGG 1 cut(s) 969
BstYI RGATCY 3 cut(s) 1051, 2122, 2881
BsuRI GGCC 5 cut(s) 216, 323, 711, 859, 1241
BtgZI GCGATG 1 cut(s) 1692
BtrI CACGTC 1 cut(s) 29
BtsIMutI CAGTG 8 cut(s) 592, 1171, 1906, 2167, 2236, 2305, 2374, 2619
BveI ACCTGC 1 cut(s) 2984
Cac8I GCNNGC 1 cut(s) 840
CaiI CAGNNNCTG 1 cut(s) 200
CciI TCATGA 1 cut(s) 1464
CfoI GCGC 4 cut(s) 246, 305, 1027, 3012
Cfr13I GGNCC 1 cut(s) 710
CseI GACGC 2 cut(s) 2520, 2621
Csp6I GTAC 6 cut(s) 638, 1419, 1616, 1943, 1976, 2961
CspCI CAANNNNNGTGG 2 cut(s) 130, 165
CviQI GTAC 6 cut(s) 638, 1419, 1616, 1943, 1976, 2961
DraI TTTAAA 3 cut(s) 1390, 1542, 2517
EaeI YGGCCR 3 cut(s) 214, 321, 1239
Eam1104I CTCTTC 3 cut(s) 108, 1719, 1839
EarI CTCTTC 3 cut(s) 108, 1719, 1839
Eco130I CCWWGG 3 cut(s) 1382, 1911, 3238
Eco24I GRGCYC 1 cut(s) 1634
Eco32I GATATC 3 cut(s) 872, 1932, 2821
Eco47III AGCGCT 1 cut(s) 1026
Eco57I CTGAAG 2 cut(s) 842, 1365
Eco88I CYCGRG 1 cut(s) 2827
EcoNI CCTNNNNNAGG 2 cut(s) 864, 1008
EcoRII CCWGG 3 cut(s) 712, 1276, 1837
EcoRV GATATC 3 cut(s) 872, 1932, 2821
EcoT14I CCWWGG 3 cut(s) 1382, 1911, 3238
EcoT22I ATGCAT 2 cut(s) 1221, 3253
EcoT38I GRGCYC 1 cut(s) 1634
ErhI CCWWGG 3 cut(s) 1382, 1911, 3238
FalI AAGNNNNNCTT 6 cut(s) 240, 272, 528, 560, 858, 890
FaqI GGGAC 4 cut(s) 1697, 2690, 3054, 3182
FauNDI CATATG 1 cut(s) 517
FbaI TGATCA 2 cut(s) 279, 1567
Fnu4HI GCNGC 4 cut(s) 201, 447, 1475, 1816
FriOI GRGCYC 1 cut(s) 1634
Fsp4HI GCNGC 4 cut(s) 201, 447, 1475, 1816
FspBI CTAG 7 cut(s) 920, 1049, 1407, 1583, 2021, 2964, 3161
FspI TGCGCA 1 cut(s) 3011
GlaI GCGC 4 cut(s) 245, 304, 1026, 3011
GluI GCNGC 4 cut(s) 201, 447, 1475, 1816
GsaI CCCAGC 5 cut(s) 2157, 2226, 2295, 2364, 2433
HaeII RGCGCY 1 cut(s) 1028
HaeIII GGCC 5 cut(s) 216, 323, 711, 859, 1241
HgaI GACGC 2 cut(s) 2520, 2621
HhaI GCGC 4 cut(s) 246, 305, 1027, 3012
Hin6I GCGC 4 cut(s) 244, 303, 1025, 3010
HinP1I GCGC 4 cut(s) 244, 303, 1025, 3010
HincII GTYRAC 1 cut(s) 2794
HindII GTYRAC 1 cut(s) 2794
HindIII AAGCTT 6 cut(s) 254, 1036, 2174, 2243, 2312, 2381
HphI GGTGA 6 cut(s) 1265, 1686, 1757, 1813, 3218, 3257
Hpy166II GTNNAC 9 cut(s) 638, 661, 752, 766, 778, 1178, 1804, 1904, 2794
Hpy8I GTNNAC 9 cut(s) 638, 661, 752, 766, 778, 1178, 1804, 1904, 2794
Hpy99I CGWCG 1 cut(s) 30
HpyCH4III ACNGT 6 cut(s) 905, 1195, 1304, 2270, 2801, 3056
HpyCH4IV ACGT 8 cut(s) 28, 148, 396, 507, 628, 748, 1601, 1981
HpyF10VI GCNNNNNNNGC 3 cut(s) 452, 1225, 3067
HpySE526I ACGT 8 cut(s) 28, 148, 396, 507, 628, 748, 1601, 1981
HspAI GCGC 4 cut(s) 244, 303, 1025, 3010
Ksp22I TGATCA 2 cut(s) 279, 1567
LmnI GCTCC 3 cut(s) 152, 1400, 1637
Lsp1109I GCAGC 4 cut(s) 187, 433, 1486, 1802
LweI GCATC 7 cut(s) 129, 1172, 1523, 1961, 2518, 3238, 3260
MaeI CTAG 7 cut(s) 920, 1049, 1407, 1583, 2021, 2964, 3161
MaeII ACGT 8 cut(s) 28, 148, 396, 507, 628, 748, 1601, 1981
MflI RGATCY 3 cut(s) 1051, 2122, 2881
MhlI GDGCHC 2 cut(s) 1582, 1634
MlsI TGGCCA 3 cut(s) 216, 323, 1241
MluNI TGGCCA 3 cut(s) 216, 323, 1241
MlyI GAGTC 5 cut(s) 581, 1412, 1864, 2099, 2851
MmeI TCCRAC 6 cut(s) 316, 388, 649, 963, 1505, 3158
Mox20I TGGCCA 3 cut(s) 216, 323, 1241
Mph1103I ATGCAT 2 cut(s) 1221, 3253
MroXI GAANNNNTTC 5 cut(s) 294, 343, 1263, 1792, 3027
MscI TGGCCA 3 cut(s) 216, 323, 1241
MslI CAYNNNNRTG 4 cut(s) 773, 1463, 1469, 2928
Msp20I TGGCCA 3 cut(s) 216, 323, 1241
MspA1I CMGCKG 1 cut(s) 446
MspCI CTTAAG 1 cut(s) 794
MspR9I CCNGG 3 cut(s) 714, 1278, 1839
Mva1269I GAATGC 1 cut(s) 351
MvaI CCWGG 3 cut(s) 714, 1278, 1839
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 3 cut(s) 452, 1225, 3067
NdeI CATATG 1 cut(s) 517
NlaIV GGNNCC 3 cut(s) 1301, 1633, 2628
NmuCI GTSAC 3 cut(s) 1166, 1271, 1312
NsbI TGCGCA 1 cut(s) 3011
NsiI ATGCAT 2 cut(s) 1221, 3253
NspI RCATGY 4 cut(s) 68, 224, 842, 3269
NspV TTCGAA 1 cut(s) 2570
PaeI GCATGC 1 cut(s) 842
PagI TCATGA 1 cut(s) 1464
PciI ACATGT 2 cut(s) 64, 220
PcsI WCGNNNNNNNCGW 1 cut(s) 745
PctI GAATGC 1 cut(s) 351
PdmI GAANNNNTTC 5 cut(s) 294, 343, 1263, 1792, 3027
PfeI GAWTC 7 cut(s) 339, 1161, 1762, 1822, 2002, 2087, 2606
PflFI GACNNNGTC 3 cut(s) 398, 571, 1115
PflMI CCANNNNNTGG 1 cut(s) 2661
PkrI GCNGC 4 cut(s) 202, 448, 1476, 1817
PleI GAGTC 5 cut(s) 580, 1411, 1864, 2099, 2851
PpsI GAGTC 5 cut(s) 580, 1411, 1864, 2099, 2851
PscI ACATGT 2 cut(s) 64, 220
PshBI ATTAAT 1 cut(s) 1247
PsiI TTATAA 3 cut(s) 462, 2805, 3002
Psp1406I AACGTT 3 cut(s) 507, 748, 1601
Psp6I CCWGG 3 cut(s) 712, 1276, 1837
PspFI CCCAGC 5 cut(s) 2153, 2222, 2291, 2360, 2429
PspGI CCWGG 3 cut(s) 712, 1276, 1837
PspN4I GGNNCC 3 cut(s) 1301, 1633, 2628
PspPI GGNCC 1 cut(s) 710
PstNI CAGNNNCTG 1 cut(s) 200
PsuI RGATCY 3 cut(s) 1051, 2122, 2881
PsyI GACNNNGTC 3 cut(s) 398, 571, 1115
PvuII CAGCTG 1 cut(s) 446
RsaI GTAC 6 cut(s) 639, 1420, 1617, 1944, 1977, 2962
RsaNI GTAC 6 cut(s) 638, 1419, 1616, 1943, 1976, 2961
RseI CAYNNNNRTG 4 cut(s) 773, 1463, 1469, 2928
SatI GCNGC 4 cut(s) 201, 447, 1475, 1816
Sau96I GGNCC 1 cut(s) 710
ScaI AGTACT 1 cut(s) 1944
SchI GAGTC 5 cut(s) 581, 1412, 1864, 2099, 2851
ScrFI CCNGG 3 cut(s) 714, 1278, 1839
SduI GDGCHC 2 cut(s) 1582, 1634
SfaNI GCATC 7 cut(s) 129, 1172, 1523, 1961, 2518, 3238, 3260
SfuI TTCGAA 1 cut(s) 2570
SmiMI CAYNNNNRTG 4 cut(s) 773, 1463, 1469, 2928
SmlI CTYRAG 3 cut(s) 93, 794, 1684
SmoI CTYRAG 3 cut(s) 93, 794, 1684
SpeI ACTAGT 1 cut(s) 1582
SphI GCATGC 1 cut(s) 842
SsiI CCGC 1 cut(s) 2736
SspI AATATT 2 cut(s) 42, 1128
SspMI CTAG 7 cut(s) 920, 1049, 1407, 1583, 2021, 2964, 3161
StyD4I CCNGG 3 cut(s) 712, 1276, 1837
StyI CCWWGG 3 cut(s) 1382, 1911, 3238
TaaI ACNGT 6 cut(s) 905, 1195, 1304, 2270, 2801, 3056
TaiI ACGT 8 cut(s) 31, 151, 399, 510, 631, 751, 1604, 1984
TaqI TCGA 4 cut(s) 1231, 2454, 2570, 2784
TaqII GACCGA 1 cut(s) 584
TatI WGTACW 2 cut(s) 637, 1942
TfiI GAWTC 7 cut(s) 339, 1161, 1762, 1822, 2002, 2087, 2606
TscAI CASTG 8 cut(s) 592, 1171, 1906, 2167, 2236, 2305, 2374, 2626
TseFI GTSAC 3 cut(s) 1166, 1271, 1312
TseI GCWGC 4 cut(s) 200, 446, 1474, 1815
Tsp45I GTSAC 3 cut(s) 1166, 1271, 1312
TspGWI ACGGA 6 cut(s) 96, 113, 302, 1406, 1852, 2801
TspRI CASTG 8 cut(s) 592, 1171, 1906, 2167, 2236, 2305, 2374, 2626
Tth111I GACNNNGTC 3 cut(s) 398, 571, 1115
Van91I CCANNNNNTGG 1 cut(s) 2661
Vha464I CTTAAG 1 cut(s) 794
VspI ATTAAT 1 cut(s) 1247
XagI CCTNNNNNAGG 2 cut(s) 864, 1008
XapI RAATTY 9 cut(s) 205, 411, 468, 998, 1262, 2116, 2512, 2519, 3014
XceI RCATGY 4 cut(s) 68, 224, 842, 3269
XcmI CCANNNNNNNNNTGG 1 cut(s) 3200
XmnI GAANNNNTTC 5 cut(s) 294, 343, 1263, 1792, 3027
XspI CTAG 7 cut(s) 920, 1049, 1407, 1583, 2021, 2964, 3161
ZrmI AGTACT 1 cut(s) 1944
Zsp2I ATGCAT 2 cut(s) 1221, 3253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.