TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 133 - 179 | 3.8e-08 | PPR repeat family |
| PPR_1 | PF12854 | 162 - 194 | 1.3e-06 | PPR repeat |
| PPR_2 | PF13041 | 165 - 210 | 5.5e-12 | PPR repeat family |
| PPR_2 | PF13041 | 207 - 248 | 2.8e-09 | PPR repeat family |
| TPR_24 | PF23276 | 220 - 321 | 1.2e-07 | Fungal tetratrico peptide repeats |
| PPR_3 | PF13812 | 223 - 282 | 2e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 231 - 262 | 1.5e-12 | PPR repeat |
| PPR | PF01535 | 237 - 267 | 2.7e-06 | PPR repeat |
| PPR_long | PF17177 | 283 - 367 | 6.4e-06 | Pentacotripeptide-repeat region of PRORP |
| TPR_24 | PF23276 | 290 - 399 | 3.7e-08 | Fungal tetratrico peptide repeats |
| PPR_3 | PF13812 | 296 - 351 | 2.1e-07 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 305 - 351 | 1.5e-12 | PPR repeat family |
| PPR_3 | PF13812 | 327 - 387 | 3.1e-06 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 340 - 386 | 1.2e-10 | PPR repeat family |
| PPR_long | PF17177 | 359 - 468 | 9.2e-08 | Pentacotripeptide-repeat region of PRORP |
| PPR_1 | PF12854 | 371 - 402 | 2.7e-06 | PPR repeat |
| PPR_2 | PF13041 | 373 - 421 | 3.7e-15 | PPR repeat family |
| PPR_1 | PF12854 | 406 - 436 | 9.1e-09 | PPR repeat |
| PPR | PF01535 | 412 - 441 | 1.8e-07 | PPR repeat |
| PPR_2 | PF13041 | 416 - 448 | 1.1e-06 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1367 |
| Acc36I | ACCTGC | 1 cut(s) | 1037 |
| AciI | CCGC | 3 cut(s) | 247, 503, 586 |
| AclWI | GGATC | 4 cut(s) | 95, 635, 648, 1109 |
| AcoI | YGGCCR | 1 cut(s) | 1325 |
| AcsI | RAATTY | 4 cut(s) | 183, 496, 646, 1394 |
| AfaI | GTAC | 3 cut(s) | 341, 1199, 1389 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 660, 1023 |
| AflIII | ACRYGT | 1 cut(s) | 972 |
| AgsI | TTSAA | 9 cut(s) | 223, 257, 511, 863, 875, 967, 1210, 1281, 1403 |
| AjnI | CCWGG | 1 cut(s) | 428 |
| AluBI | AGCT | 3 cut(s) | 21, 358, 1050 |
| AluI | AGCT | 3 cut(s) | 21, 358, 1050 |
| Alw21I | GWGCWC | 1 cut(s) | 493 |
| Alw26I | GTCTC | 1 cut(s) | 392 |
| AlwI | GGATC | 4 cut(s) | 95, 635, 648, 1109 |
| AoxI | GGCC | 2 cut(s) | 514, 1325 |
| ApeKI | GCWGC | 3 cut(s) | 263, 271, 1013 |
| ApoI | RAATTY | 4 cut(s) | 183, 496, 646, 1394 |
| AseI | ATTAAT | 2 cut(s) | 620, 1251 |
| AspS9I | GGNCC | 3 cut(s) | 375, 583, 1026 |
| AsuHPI | GGTGA | 1 cut(s) | 180 |
| AvaII | GGWCC | 3 cut(s) | 375, 583, 1026 |
| BamHI | GGATCC | 1 cut(s) | 640 |
| BanII | GRGCYC | 1 cut(s) | 436 |
| BauI | CACGAG | 1 cut(s) | 212 |
| Bbv12I | GWGCWC | 1 cut(s) | 493 |
| BbvI | GCAGC | 3 cut(s) | 275, 283, 1025 |
| BccI | CCATC | 6 cut(s) | 39, 620, 624, 883, 1171, 1336 |
| BceAI | ACGGC | 1 cut(s) | 905 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1002, 1036 |
| BciT130I | CCWGG | 1 cut(s) | 430 |
| BclI | TGATCA | 2 cut(s) | 166, 1101 |
| BcoDI | GTCTC | 1 cut(s) | 392 |
| BfaI | CTAG | 1 cut(s) | 792 |
| BfuAI | ACCTGC | 1 cut(s) | 1037 |
| BisI | GCNGC | 4 cut(s) | 264, 272, 504, 1014 |
| BlsI | GCNGC | 4 cut(s) | 265, 273, 505, 1015 |
| Bme1390I | CCNGG | 1 cut(s) | 430 |
| Bme18I | GGWCC | 3 cut(s) | 375, 583, 1026 |
| BmgT120I | GGNCC | 3 cut(s) | 375, 583, 1026 |
| BmiI | GGNNCC | 2 cut(s) | 377, 642 |
| BmrFI | CCNGG | 1 cut(s) | 430 |
| BmrI | ACTGGG | 1 cut(s) | 1218 |
| BmsI | GCATC | 6 cut(s) | 42, 375, 676, 778, 856, 1111 |
| BmuI | ACTGGG | 1 cut(s) | 1218 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 541, 573, 584, 616 |
| Bpu10I | CCTNAGC | 1 cut(s) | 558 |
| Bsa29I | ATCGAT | 1 cut(s) | 315 |
| BsaJI | CCNNGG | 3 cut(s) | 429, 654, 1060 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 660, 1023 |
| Bse1I | ACTGG | 2 cut(s) | 1224, 1302 |
| BseBI | CCWGG | 1 cut(s) | 430 |
| BseCI | ATCGAT | 1 cut(s) | 315 |
| BseDI | CCNNGG | 3 cut(s) | 429, 654, 1060 |
| BseGI | GGATG | 5 cut(s) | 54, 211, 390, 635, 793 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 660, 1023 |
| BseMII | CTCAG | 4 cut(s) | 449, 512, 572, 1254 |
| BseNI | ACTGG | 2 cut(s) | 1224, 1302 |
| BseXI | GCAGC | 3 cut(s) | 275, 283, 1025 |
| BshFI | GGCC | 2 cut(s) | 516, 1327 |
| BshVI | ATCGAT | 1 cut(s) | 315 |
| BsiHKAI | GWGCWC | 1 cut(s) | 493 |
| BsiSI | CCGG | 1 cut(s) | 231 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 660, 1023 |
| BsmAI | GTCTC | 1 cut(s) | 392 |
| BsmI | GAATGC | 3 cut(s) | 232, 506, 878 |
| BsnI | GGCC | 2 cut(s) | 516, 1327 |
| Bsp1286I | GDGCHC | 2 cut(s) | 436, 493 |
| Bsp143I | GATC | 8 cut(s) | 100, 166, 312, 345, 640, 936, 1101, 1114 |
| BspACI | CCGC | 3 cut(s) | 247, 503, 586 |
| BspANI | GGCC | 2 cut(s) | 516, 1327 |
| BspCNI | CTCAG | 4 cut(s) | 448, 513, 571, 1253 |
| BspDI | ATCGAT | 1 cut(s) | 315 |
| BspHI | TCATGA | 1 cut(s) | 126 |
| BspLI | GGNNCC | 2 cut(s) | 377, 642 |
| BspMI | ACCTGC | 1 cut(s) | 1037 |
| BspPI | GGATC | 4 cut(s) | 95, 635, 648, 1109 |
| BsrI | ACTGG | 2 cut(s) | 1224, 1302 |
| BssECI | CCNNGG | 3 cut(s) | 429, 654, 1060 |
| BssMI | GATC | 8 cut(s) | 100, 166, 312, 345, 640, 936, 1101, 1114 |
| BssSI | CACGAG | 1 cut(s) | 212 |
| BssT1I | CCWWGG | 1 cut(s) | 654 |
| Bst2BI | CACGAG | 1 cut(s) | 212 |
| Bst2UI | CCWGG | 1 cut(s) | 430 |
| Bst4CI | ACNGT | 7 cut(s) | 71, 614, 824, 1061, 1215, 1271, 1359 |
| Bst6I | CTCTTC | 2 cut(s) | 1296, 1372 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 305 |
| BstC8I | GCNNGC | 2 cut(s) | 518, 691 |
| BstDEI | CTNAG | 4 cut(s) | 435, 521, 558, 1240 |
| BstDSI | CCRYGG | 1 cut(s) | 1060 |
| BstF5I | GGATG | 5 cut(s) | 54, 211, 390, 635, 793 |
| BstKTI | GATC | 8 cut(s) | 103, 169, 315, 348, 643, 939, 1104, 1117 |
| BstMAI | GTCTC | 1 cut(s) | 392 |
| BstMBI | GATC | 8 cut(s) | 100, 166, 312, 345, 640, 936, 1101, 1114 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 305, 875, 917, 1283 |
| BstNI | CCWGG | 1 cut(s) | 430 |
| BstSCI | CCNGG | 1 cut(s) | 428 |
| BstV1I | GCAGC | 3 cut(s) | 275, 283, 1025 |
| BstX2I | RGATCY | 1 cut(s) | 640 |
| BstYI | RGATCY | 1 cut(s) | 640 |
| Bsu15I | ATCGAT | 1 cut(s) | 315 |
| BsuRI | GGCC | 2 cut(s) | 516, 1327 |
| BsuTUI | ATCGAT | 1 cut(s) | 315 |
| BtgI | CCRYGG | 1 cut(s) | 1060 |
| BtsCI | GGATG | 5 cut(s) | 54, 211, 390, 635, 793 |
| BtsIMutI | CAGTG | 1 cut(s) | 829 |
| BveI | ACCTGC | 1 cut(s) | 1037 |
| Cac8I | GCNNGC | 2 cut(s) | 518, 691 |
| CciI | TCATGA | 1 cut(s) | 126 |
| Cfr13I | GGNCC | 3 cut(s) | 375, 583, 1026 |
| ClaI | ATCGAT | 1 cut(s) | 315 |
| Csp6I | GTAC | 3 cut(s) | 340, 1198, 1388 |
| CviAII | CATG | 6 cut(s) | 127, 305, 349, 724, 784, 1201 |
| CviQI | GTAC | 3 cut(s) | 340, 1198, 1388 |
| DdeI | CTNAG | 4 cut(s) | 435, 521, 558, 1240 |
| DpnI | GATC | 8 cut(s) | 102, 168, 314, 347, 642, 938, 1103, 1116 |
| DpnII | GATC | 8 cut(s) | 100, 166, 312, 345, 640, 936, 1101, 1114 |
| EaeI | YGGCCR | 1 cut(s) | 1325 |
| Eam1104I | CTCTTC | 2 cut(s) | 1296, 1372 |
| EarI | CTCTTC | 2 cut(s) | 1296, 1372 |
| Eco130I | CCWWGG | 1 cut(s) | 654 |
| Eco24I | GRGCYC | 1 cut(s) | 436 |
| Eco47I | GGWCC | 3 cut(s) | 375, 583, 1026 |
| EcoO109I | RGGNCCY | 2 cut(s) | 375, 1026 |
| EcoRII | CCWGG | 1 cut(s) | 428 |
| EcoT14I | CCWWGG | 1 cut(s) | 654 |
| EcoT22I | ATGCAT | 1 cut(s) | 1233 |
| EcoT38I | GRGCYC | 1 cut(s) | 436 |
| ErhI | CCWWGG | 1 cut(s) | 654 |
| FaeI | CATG | 6 cut(s) | 130, 308, 352, 727, 787, 1204 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 572, 604 |
| FatI | CATG | 6 cut(s) | 126, 304, 348, 723, 783, 1200 |
| FauNDI | CATATG | 1 cut(s) | 841 |
| FbaI | TGATCA | 2 cut(s) | 166, 1101 |
| Fnu4HI | GCNGC | 4 cut(s) | 264, 272, 504, 1014 |
| FokI | GGATG | 5 cut(s) | 61, 218, 397, 642, 800 |
| FriOI | GRGCYC | 1 cut(s) | 436 |
| Fsp4HI | GCNGC | 4 cut(s) | 264, 272, 504, 1014 |
| FspBI | CTAG | 1 cut(s) | 792 |
| GluI | GCNGC | 4 cut(s) | 264, 272, 504, 1014 |
| HaeIII | GGCC | 2 cut(s) | 516, 1327 |
| HapII | CCGG | 1 cut(s) | 231 |
| Hin1II | CATG | 6 cut(s) | 130, 308, 352, 727, 787, 1204 |
| HincII | GTYRAC | 1 cut(s) | 958 |
| HindII | GTYRAC | 1 cut(s) | 958 |
| HinfI | GANTC | 5 cut(s) | 219, 317, 599, 903, 1321 |
| HpaI | GTTAAC | 1 cut(s) | 958 |
| HpaII | CCGG | 1 cut(s) | 231 |
| HphI | GGTGA | 1 cut(s) | 180 |
| Hpy166II | GTNNAC | 3 cut(s) | 364, 757, 958 |
| Hpy188I | TCNGA | 4 cut(s) | 182, 438, 495, 1441 |
| Hpy8I | GTNNAC | 3 cut(s) | 364, 757, 958 |
| HpyAV | CCTTC | 5 cut(s) | 433, 547, 574, 1309, 1367 |
| HpyCH4III | ACNGT | 7 cut(s) | 71, 614, 824, 1061, 1215, 1271, 1359 |
| HpyCH4IV | ACGT | 1 cut(s) | 972 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 305, 875, 917, 1283 |
| HpyF3I | CTNAG | 4 cut(s) | 435, 521, 558, 1240 |
| HpySE526I | ACGT | 1 cut(s) | 972 |
| Hsp92II | CATG | 6 cut(s) | 130, 308, 352, 727, 787, 1204 |
| Ksp22I | TGATCA | 2 cut(s) | 166, 1101 |
| KspAI | GTTAAC | 1 cut(s) | 958 |
| Kzo9I | GATC | 8 cut(s) | 100, 166, 312, 345, 640, 936, 1101, 1114 |
| LmnI | GCTCC | 2 cut(s) | 355, 496 |
| Lsp1109I | GCAGC | 3 cut(s) | 275, 283, 1025 |
| LweI | GCATC | 6 cut(s) | 42, 375, 676, 778, 856, 1111 |
| MaeI | CTAG | 1 cut(s) | 792 |
| MaeII | ACGT | 1 cut(s) | 972 |
| MaeIII | GTNAC | 2 cut(s) | 709, 1336 |
| MalI | GATC | 8 cut(s) | 102, 168, 314, 347, 642, 938, 1103, 1116 |
| MboI | GATC | 8 cut(s) | 100, 166, 312, 345, 640, 936, 1101, 1114 |
| MboII | GAAGA | 5 cut(s) | 875, 1313, 1389, 1391, 1394 |
| MflI | RGATCY | 1 cut(s) | 640 |
| MhlI | GDGCHC | 2 cut(s) | 436, 493 |
| MluCI | AATT | 9 cut(s) | 32, 64, 183, 496, 621, 646, 1018, 1169, 1394 |
| MlyI | GAGTC | 1 cut(s) | 593 |
| MmeI | TCCRAC | 1 cut(s) | 128 |
| Mph1103I | ATGCAT | 1 cut(s) | 1233 |
| MseI | TTAA | 8 cut(s) | 294, 465, 620, 957, 1043, 1185, 1251, 1352 |
| MslI | CAYNNNNRTG | 1 cut(s) | 840 |
| MspI | CCGG | 1 cut(s) | 231 |
| MspR9I | CCNGG | 1 cut(s) | 430 |
| Mva1269I | GAATGC | 3 cut(s) | 232, 506, 878 |
| MvaI | CCWGG | 1 cut(s) | 430 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 305, 875, 917, 1283 |
| NdeI | CATATG | 1 cut(s) | 841 |
| NdeII | GATC | 8 cut(s) | 100, 166, 312, 345, 640, 936, 1101, 1114 |
| NlaIII | CATG | 6 cut(s) | 130, 308, 352, 727, 787, 1204 |
| NlaIV | GGNNCC | 2 cut(s) | 377, 642 |
| NmuCI | GTSAC | 2 cut(s) | 709, 1336 |
| NsiI | ATGCAT | 1 cut(s) | 1233 |
| PagI | TCATGA | 1 cut(s) | 126 |
| PctI | GAATGC | 3 cut(s) | 232, 506, 878 |
| PfeI | GAWTC | 4 cut(s) | 219, 317, 903, 1321 |
| PkrI | GCNGC | 4 cut(s) | 265, 273, 505, 1015 |
| PleI | GAGTC | 1 cut(s) | 593 |
| PpsI | GAGTC | 1 cut(s) | 593 |
| PpuMI | RGGWCCY | 2 cut(s) | 375, 1026 |
| PshBI | ATTAAT | 2 cut(s) | 620, 1251 |
| PsiI | TTATAA | 1 cut(s) | 1367 |
| Psp5II | RGGWCCY | 2 cut(s) | 375, 1026 |
| Psp6I | CCWGG | 1 cut(s) | 428 |
| PspGI | CCWGG | 1 cut(s) | 428 |
| PspN4I | GGNNCC | 2 cut(s) | 377, 642 |
| PspPI | GGNCC | 3 cut(s) | 375, 583, 1026 |
| PspPPI | RGGWCCY | 2 cut(s) | 375, 1026 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 192, 224 |
| PsuI | RGATCY | 1 cut(s) | 640 |
| RsaI | GTAC | 3 cut(s) | 341, 1199, 1389 |
| RsaNI | GTAC | 3 cut(s) | 340, 1198, 1388 |
| RseI | CAYNNNNRTG | 1 cut(s) | 840 |
| SaqAI | TTAA | 8 cut(s) | 294, 465, 620, 957, 1043, 1185, 1251, 1352 |
| SatI | GCNGC | 4 cut(s) | 264, 272, 504, 1014 |
| Sau3AI | GATC | 8 cut(s) | 100, 166, 312, 345, 640, 936, 1101, 1114 |
| Sau96I | GGNCC | 3 cut(s) | 375, 583, 1026 |
| SchI | GAGTC | 1 cut(s) | 593 |
| ScrFI | CCNGG | 1 cut(s) | 430 |
| SduI | GDGCHC | 2 cut(s) | 436, 493 |
| SfaNI | GCATC | 6 cut(s) | 42, 375, 676, 778, 856, 1111 |
| SinI | GGWCC | 3 cut(s) | 375, 583, 1026 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 840 |
| Sse9I | AATT | 9 cut(s) | 32, 64, 183, 496, 621, 646, 1018, 1169, 1394 |
| SsiI | CCGC | 3 cut(s) | 247, 503, 586 |
| SspMI | CTAG | 1 cut(s) | 792 |
| StyD4I | CCNGG | 1 cut(s) | 428 |
| StyI | CCWWGG | 1 cut(s) | 654 |
| TaaI | ACNGT | 7 cut(s) | 71, 614, 824, 1061, 1215, 1271, 1359 |
| TaiI | ACGT | 1 cut(s) | 975 |
| TaqI | TCGA | 4 cut(s) | 43, 74, 315, 1022 |
| TasI | AATT | 9 cut(s) | 32, 64, 183, 496, 621, 646, 1018, 1169, 1394 |
| TatI | WGTACW | 2 cut(s) | 1197, 1387 |
| TauI | GCSGC | 1 cut(s) | 506 |
| TfiI | GAWTC | 4 cut(s) | 219, 317, 903, 1321 |
| Tru1I | TTAA | 8 cut(s) | 294, 465, 620, 957, 1043, 1185, 1251, 1352 |
| Tru9I | TTAA | 8 cut(s) | 294, 465, 620, 957, 1043, 1185, 1251, 1352 |
| TscAI | CASTG | 1 cut(s) | 829 |
| TseFI | GTSAC | 2 cut(s) | 709, 1336 |
| TseI | GCWGC | 3 cut(s) | 263, 271, 1013 |
| Tsp45I | GTSAC | 2 cut(s) | 709, 1336 |
| TspDTI | ATGAA | 3 cut(s) | 593, 1182, 1217 |
| TspRI | CASTG | 1 cut(s) | 829 |
| VpaK11BI | GGWCC | 3 cut(s) | 375, 583, 1026 |
| VspI | ATTAAT | 2 cut(s) | 620, 1251 |
| XapI | RAATTY | 4 cut(s) | 183, 496, 646, 1394 |
| XspI | CTAG | 1 cut(s) | 792 |
| Zsp2I | ATGCAT | 1 cut(s) | 1233 |