TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 7 - 178 | 3.1e-43 | TIR domain |
| TIR_2 | PF13676 | 10 - 105 | 1.9e-13 | TIR domain |
| NB-ARC | PF00931 | 193 - 362 | 7.8e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 434 - 503 | 1.7e-11 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_RPS2 | PF23247 | 643 - 757 | 3.8e-07 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 149, 965 |
| AccBSI | CCGCTC | 2 cut(s) | 453, 2292 |
| AccII | CGCG | 5 cut(s) | 11, 353, 582, 1353, 2288 |
| AccIII | TCCGGA | 2 cut(s) | 411, 1243 |
| AclI | AACGTT | 1 cut(s) | 1563 |
| AclWI | GGATC | 6 cut(s) | 216, 229, 422, 625, 1430, 1500 |
| AcoI | YGGCCR | 2 cut(s) | 511, 1359 |
| AcsI | RAATTY | 5 cut(s) | 642, 1248, 2119, 2650, 2663 |
| AcuI | CTGAAG | 8 cut(s) | 182, 300, 551, 1020, 1624, 2027, 2375, 2412 |
| AfaI | GTAC | 5 cut(s) | 23, 1407, 1497, 1645, 2596 |
| AflII | CTTAAG | 2 cut(s) | 1262, 1283 |
| AflIII | ACRYGT | 4 cut(s) | 27, 283, 1851, 2724 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1852 |
| AjiI | CACGTC | 1 cut(s) | 28 |
| AjnI | CCWGG | 4 cut(s) | 182, 946, 1293, 2637 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 855, 887 |
| Alw21I | GWGCWC | 3 cut(s) | 1059, 2240, 2575 |
| Alw26I | GTCTC | 3 cut(s) | 1117, 1470, 1704 |
| Alw44I | GTGCAC | 2 cut(s) | 2236, 2571 |
| AlwI | GGATC | 6 cut(s) | 216, 229, 422, 625, 1430, 1500 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1625 |
| Aor13HI | TCCGGA | 2 cut(s) | 411, 1243 |
| AoxI | GGCC | 5 cut(s) | 511, 802, 903, 1359, 1770 |
| ApaLI | GTGCAC | 2 cut(s) | 2236, 2571 |
| ApeKI | GCWGC | 4 cut(s) | 264, 437, 440, 2252 |
| ApoI | RAATTY | 5 cut(s) | 642, 1248, 2119, 2650, 2663 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 574, 1125, 1722 |
| AspLEI | GCGC | 1 cut(s) | 2288 |
| AspS9I | GGNCC | 9 cut(s) | 70, 124, 391, 409, 802, 834, 904, 944, 1348 |
| AsuC2I | CCSGG | 1 cut(s) | 2316 |
| AsuHPI | GGTGA | 3 cut(s) | 1902, 1973, 2312 |
| AvaII | GGWCC | 7 cut(s) | 70, 124, 391, 409, 834, 944, 1348 |
| BaeGI | GKGCMC | 2 cut(s) | 2240, 2575 |
| BalI | TGGCCA | 2 cut(s) | 513, 1361 |
| BamHI | GGATCC | 1 cut(s) | 221 |
| BanII | GRGCYC | 1 cut(s) | 1059 |
| Bbv12I | GWGCWC | 3 cut(s) | 1059, 2240, 2575 |
| BbvCI | CCTCAGC | 1 cut(s) | 1764 |
| BbvI | GCAGC | 4 cut(s) | 276, 427, 449, 2239 |
| BccI | CCATC | 7 cut(s) | 81, 222, 646, 1364, 1734, 1781, 2338 |
| BciT130I | CCWGG | 4 cut(s) | 184, 948, 1295, 2639 |
| BciVI | GTATCC | 1 cut(s) | 1330 |
| BcnI | CCSGG | 1 cut(s) | 2316 |
| BcoDI | GTCTC | 3 cut(s) | 1117, 1470, 1704 |
| BfaI | CTAG | 3 cut(s) | 662, 1503, 2186 |
| BfmI | CTRYAG | 4 cut(s) | 441, 1164, 1531, 2273 |
| BfrI | CTTAAG | 2 cut(s) | 1262, 1283 |
| BfuI | GTATCC | 1 cut(s) | 1330 |
| BisI | GCNGC | 7 cut(s) | 16, 265, 438, 441, 454, 2253, 2375 |
| BlpI | GCTNAGC | 1 cut(s) | 1634 |
| BlsI | GCNGC | 7 cut(s) | 17, 266, 439, 442, 455, 2254, 2376 |
| BmcAI | AGTACT | 2 cut(s) | 1407, 2596 |
| Bme1390I | CCNGG | 5 cut(s) | 184, 948, 1295, 2316, 2639 |
| Bme18I | GGWCC | 7 cut(s) | 70, 124, 391, 409, 834, 944, 1348 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1852 |
| BmgBI | CACGTC | 1 cut(s) | 28 |
| BmgT120I | GGNCC | 9 cut(s) | 70, 124, 391, 409, 802, 834, 904, 944, 1348 |
| BmiI | GGNNCC | 3 cut(s) | 223, 835, 1670 |
| BmrFI | CCNGG | 5 cut(s) | 184, 948, 1295, 2316, 2639 |
| BpmI | CTGGAG | 3 cut(s) | 439, 1602, 1728 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1764 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1634 |
| BpuEI | CTTGAG | 5 cut(s) | 55, 814, 1073, 1099, 1394 |
| BpuMI | CCSGG | 1 cut(s) | 2316 |
| BsaAI | YACGTR | 1 cut(s) | 1499 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1788, 2607 |
| BsaJI | CCNNGG | 4 cut(s) | 9, 837, 1293, 2314 |
| BsaWI | WCCGGW | 2 cut(s) | 411, 1243 |
| Bse1I | ACTGG | 6 cut(s) | 340, 394, 563, 762, 1339, 1711 |
| Bse3DI | GCAATG | 3 cut(s) | 1038, 2097, 2384 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1788, 2607 |
| BseAI | TCCGGA | 2 cut(s) | 411, 1243 |
| BseBI | CCWGG | 4 cut(s) | 184, 948, 1295, 2639 |
| BseDI | CCNNGG | 4 cut(s) | 9, 837, 1293, 2314 |
| BseGI | GGATG | 6 cut(s) | 148, 657, 1375, 1773, 2095, 2365 |
| BseJI | GATNNNNATC | 2 cut(s) | 1788, 2607 |
| BseMI | GCAATG | 3 cut(s) | 1038, 2097, 2384 |
| BseMII | CTCAG | 6 cut(s) | 1664, 1778, 1808, 2169, 2445, 2626 |
| BseNI | ACTGG | 6 cut(s) | 340, 394, 563, 762, 1339, 1711 |
| BseSI | GKGCMC | 2 cut(s) | 2240, 2575 |
| BseXI | GCAGC | 4 cut(s) | 276, 427, 449, 2239 |
| BseYI | CCCAGC | 1 cut(s) | 2512 |
| BsgI | GTGCAG | 2 cut(s) | 283, 2639 |
| Bsh1236I | CGCG | 5 cut(s) | 11, 353, 582, 1353, 2288 |
| BshFI | GGCC | 5 cut(s) | 513, 804, 905, 1361, 1772 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1059, 2240, 2575 |
| BsiSI | CCGG | 3 cut(s) | 412, 1244, 2316 |
| BslFI | GGGAC | 3 cut(s) | 131, 847, 2529 |
| BsmAI | GTCTC | 3 cut(s) | 1117, 1470, 1704 |
| BsmFI | GGGAC | 3 cut(s) | 131, 847, 2529 |
| BsnI | GGCC | 5 cut(s) | 513, 804, 905, 1361, 1772 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1059, 2240, 2575 |
| Bsp13I | TCCGGA | 2 cut(s) | 411, 1243 |
| Bsp143I | GATC | 9 cut(s) | 221, 252, 414, 516, 617, 1435, 1505, 2302, 2323 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1634 |
| BspANI | GGCC | 5 cut(s) | 513, 804, 905, 1361, 1772 |
| BspCNI | CTCAG | 6 cut(s) | 1665, 1777, 1809, 2170, 2446, 2625 |
| BspEI | TCCGGA | 2 cut(s) | 411, 1243 |
| BspFNI | CGCG | 5 cut(s) | 11, 353, 582, 1353, 2288 |
| BspHI | TCATGA | 2 cut(s) | 1252, 1546 |
| BspLI | GGNNCC | 3 cut(s) | 223, 835, 1670 |
| BspMAI | CTGCAG | 1 cut(s) | 445 |
| BspPI | GGATC | 6 cut(s) | 216, 229, 422, 625, 1430, 1500 |
| BspTI | CTTAAG | 2 cut(s) | 1262, 1283 |
| BsrBI | CCGCTC | 2 cut(s) | 453, 2292 |
| BsrDI | GCAATG | 3 cut(s) | 1038, 2097, 2384 |
| BsrI | ACTGG | 6 cut(s) | 340, 394, 563, 762, 1339, 1711 |
| BssECI | CCNNGG | 4 cut(s) | 9, 837, 1293, 2314 |
| BssMI | GATC | 9 cut(s) | 221, 252, 414, 516, 617, 1435, 1505, 2302, 2323 |
| BssT1I | CCWWGG | 1 cut(s) | 837 |
| Bst2UI | CCWGG | 4 cut(s) | 184, 948, 1295, 2639 |
| Bst4CI | ACNGT | 4 cut(s) | 1382, 1466, 2482, 2549 |
| Bst6I | CTCTTC | 1 cut(s) | 2103 |
| BstAFI | CTTAAG | 2 cut(s) | 1262, 1283 |
| BstBAI | YACGTR | 1 cut(s) | 1499 |
| BstC8I | GCNNGC | 8 cut(s) | 13, 168, 189, 584, 1029, 1071, 1770, 2290 |
| BstDEI | CTNAG | 9 cut(s) | 1061, 1512, 1634, 1673, 1764, 1817, 2178, 2454, 2612 |
| BstDSI | CCRYGG | 1 cut(s) | 9 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1095 |
| BstF5I | GGATG | 6 cut(s) | 148, 657, 1375, 1773, 2095, 2365 |
| BstFNI | CGCG | 5 cut(s) | 11, 353, 582, 1353, 2288 |
| BstHHI | GCGC | 1 cut(s) | 2288 |
| BstKTI | GATC | 9 cut(s) | 224, 255, 417, 519, 620, 1438, 1508, 2305, 2326 |
| BstMAI | GTCTC | 3 cut(s) | 1117, 1470, 1704 |
| BstMBI | GATC | 9 cut(s) | 221, 252, 414, 516, 617, 1435, 1505, 2302, 2323 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 45, 54, 434, 1160 |
| BstNI | CCWGG | 4 cut(s) | 184, 948, 1295, 2639 |
| BstNSI | RCATGY | 5 cut(s) | 287, 1020, 1154, 2346, 2728 |
| BstSCI | CCNGG | 5 cut(s) | 182, 946, 1293, 2314, 2637 |
| BstSFI | CTRYAG | 4 cut(s) | 441, 1164, 1531, 2273 |
| BstSLI | GKGCMC | 2 cut(s) | 2240, 2575 |
| BstUI | CGCG | 5 cut(s) | 11, 353, 582, 1353, 2288 |
| BstV1I | GCAGC | 4 cut(s) | 276, 427, 449, 2239 |
| BstX2I | RGATCY | 3 cut(s) | 221, 414, 1505 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2677 |
| BstYI | RGATCY | 3 cut(s) | 221, 414, 1505 |
| BsuI | GTATCC | 1 cut(s) | 1330 |
| BsuRI | GGCC | 5 cut(s) | 513, 804, 905, 1361, 1772 |
| BtgI | CCRYGG | 1 cut(s) | 9 |
| BtgZI | GCGATG | 1 cut(s) | 1432 |
| BtrI | CACGTC | 1 cut(s) | 28 |
| BtsCI | GGATG | 6 cut(s) | 148, 657, 1375, 1773, 2095, 2365 |
| BtsI | GCAGTG | 1 cut(s) | 2247 |
| BtsIMutI | CAGTG | 4 cut(s) | 1704, 2175, 2247, 2451 |
| Cac8I | GCNNGC | 8 cut(s) | 13, 168, 189, 584, 1029, 1071, 1770, 2290 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1625 |
| CciI | TCATGA | 2 cut(s) | 1252, 1546 |
| CfoI | GCGC | 1 cut(s) | 2288 |
| Cfr13I | GGNCC | 9 cut(s) | 70, 124, 391, 409, 802, 834, 904, 944, 1348 |
| Cfr42I | CCGCGG | 1 cut(s) | 12 |
| CseI | GACGC | 2 cut(s) | 1342, 2404 |
| Csp6I | GTAC | 5 cut(s) | 22, 1406, 1496, 1644, 2595 |
| CviQI | GTAC | 5 cut(s) | 22, 1406, 1496, 1644, 2595 |
| DdeI | CTNAG | 9 cut(s) | 1061, 1512, 1634, 1673, 1764, 1817, 2178, 2454, 2612 |
| DpnI | GATC | 9 cut(s) | 223, 254, 416, 518, 619, 1437, 1507, 2304, 2325 |
| DpnII | GATC | 9 cut(s) | 221, 252, 414, 516, 617, 1435, 1505, 2302, 2323 |
| DraI | TTTAAA | 1 cut(s) | 2260 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1852 |
| EaeI | YGGCCR | 2 cut(s) | 511, 1359 |
| Eam1104I | CTCTTC | 1 cut(s) | 2103 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1852 |
| EarI | CTCTTC | 1 cut(s) | 2103 |
| EciI | GGCGGA | 1 cut(s) | 672 |
| Ecl136II | GAGCTC | 1 cut(s) | 1057 |
| Eco130I | CCWWGG | 1 cut(s) | 837 |
| Eco24I | GRGCYC | 1 cut(s) | 1059 |
| Eco47I | GGWCC | 7 cut(s) | 70, 124, 391, 409, 834, 944, 1348 |
| Eco53kI | GAGCTC | 1 cut(s) | 1057 |
| Eco57I | CTGAAG | 8 cut(s) | 182, 300, 551, 1020, 1624, 2027, 2375, 2412 |
| EcoICRI | GAGCTC | 1 cut(s) | 1057 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1095 |
| EcoRII | CCWGG | 4 cut(s) | 182, 946, 1293, 2637 |
| EcoT14I | CCWWGG | 1 cut(s) | 837 |
| EcoT38I | GRGCYC | 1 cut(s) | 1059 |
| ErhI | CCWWGG | 1 cut(s) | 837 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1622, 1654 |
| FaqI | GGGAC | 3 cut(s) | 131, 847, 2529 |
| FauI | CCCGC | 2 cut(s) | 4, 211 |
| FauNDI | CATATG | 1 cut(s) | 2226 |
| Fnu4HI | GCNGC | 7 cut(s) | 16, 265, 438, 441, 454, 2253, 2375 |
| FokI | GGATG | 6 cut(s) | 155, 664, 1382, 1760, 2102, 2372 |
| FriOI | GRGCYC | 1 cut(s) | 1059 |
| Fsp4HI | GCNGC | 7 cut(s) | 16, 265, 438, 441, 454, 2253, 2375 |
| FspBI | CTAG | 3 cut(s) | 662, 1503, 2186 |
| GlaI | GCGC | 1 cut(s) | 2287 |
| GluI | GCNGC | 7 cut(s) | 16, 265, 438, 441, 454, 2253, 2375 |
| GsaI | CCCAGC | 1 cut(s) | 2516 |
| GsuI | CTGGAG | 3 cut(s) | 439, 1602, 1728 |
| HaeIII | GGCC | 5 cut(s) | 513, 804, 905, 1361, 1772 |
| HapII | CCGG | 3 cut(s) | 412, 1244, 2316 |
| HgaI | GACGC | 2 cut(s) | 1342, 2404 |
| HhaI | GCGC | 1 cut(s) | 2288 |
| Hin6I | GCGC | 1 cut(s) | 2286 |
| HinP1I | GCGC | 1 cut(s) | 2286 |
| HincII | GTYRAC | 4 cut(s) | 281, 672, 1807, 2350 |
| HindII | GTYRAC | 4 cut(s) | 281, 672, 1807, 2350 |
| HindIII | AAGCTT | 3 cut(s) | 1259, 1517, 1631 |
| HpaII | CCGG | 3 cut(s) | 412, 1244, 2316 |
| HphI | GGTGA | 3 cut(s) | 1902, 1973, 2312 |
| Hpy99I | CGWCG | 2 cut(s) | 29, 2420 |
| HpyAV | CCTTC | 9 cut(s) | 440, 479, 608, 824, 1091, 1592, 2051, 2225, 2350 |
| HpyCH4III | ACNGT | 4 cut(s) | 1382, 1466, 2482, 2549 |
| HpyCH4IV | ACGT | 7 cut(s) | 27, 931, 1498, 1563, 1800, 1851, 2683 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 45, 54, 434, 1160 |
| HpyF3I | CTNAG | 9 cut(s) | 1061, 1512, 1634, 1673, 1764, 1817, 2178, 2454, 2612 |
| HpySE526I | ACGT | 7 cut(s) | 27, 931, 1498, 1563, 1800, 1851, 2683 |
| HspAI | GCGC | 1 cut(s) | 2286 |
| Kpn2I | TCCGGA | 2 cut(s) | 411, 1243 |
| KspI | CCGCGG | 1 cut(s) | 12 |
| Kzo9I | GATC | 9 cut(s) | 221, 252, 414, 516, 617, 1435, 1505, 2302, 2323 |
| LmnI | GCTCC | 4 cut(s) | 1062, 1414, 2283, 2641 |
| Lsp1109I | GCAGC | 4 cut(s) | 276, 427, 449, 2239 |
| MaeI | CTAG | 3 cut(s) | 662, 1503, 2186 |
| MaeII | ACGT | 7 cut(s) | 27, 931, 1498, 1563, 1800, 1851, 2683 |
| MaeIII | GTNAC | 5 cut(s) | 469, 932, 1376, 1426, 1854 |
| MalI | GATC | 9 cut(s) | 223, 254, 416, 518, 619, 1437, 1507, 2304, 2325 |
| MbiI | CCGCTC | 2 cut(s) | 453, 2292 |
| MboI | GATC | 9 cut(s) | 221, 252, 414, 516, 617, 1435, 1505, 2302, 2323 |
| MfeI | CAATTG | 1 cut(s) | 1997 |
| MflI | RGATCY | 3 cut(s) | 221, 414, 1505 |
| MhlI | GDGCHC | 3 cut(s) | 1059, 2240, 2575 |
| MlsI | TGGCCA | 2 cut(s) | 513, 1361 |
| MluNI | TGGCCA | 2 cut(s) | 513, 1361 |
| MlyI | GAGTC | 5 cut(s) | 188, 890, 929, 2401, 2429 |
| MmeI | TCCRAC | 1 cut(s) | 547 |
| MnlI | CCTC | 7 cut(s) | 38, 373, 1294, 1563, 1773, 1774, 2478 |
| Mox20I | TGGCCA | 2 cut(s) | 513, 1361 |
| MroI | TCCGGA | 2 cut(s) | 411, 1243 |
| MroXI | GAANNNNTTC | 3 cut(s) | 574, 1125, 1722 |
| MscI | TGGCCA | 2 cut(s) | 513, 1361 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1551 |
| Msp20I | TGGCCA | 2 cut(s) | 513, 1361 |
| MspA1I | CMGCKG | 2 cut(s) | 11, 440 |
| MspCI | CTTAAG | 2 cut(s) | 1262, 1283 |
| MspI | CCGG | 3 cut(s) | 412, 1244, 2316 |
| MspR9I | CCNGG | 5 cut(s) | 184, 948, 1295, 2316, 2639 |
| MunI | CAATTG | 1 cut(s) | 1997 |
| MvaI | CCWGG | 4 cut(s) | 184, 948, 1295, 2639 |
| MvnI | CGCG | 5 cut(s) | 11, 353, 582, 1353, 2288 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 45, 54, 434, 1160 |
| NciI | CCSGG | 1 cut(s) | 2316 |
| NdeI | CATATG | 1 cut(s) | 2226 |
| NdeII | GATC | 9 cut(s) | 221, 252, 414, 516, 617, 1435, 1505, 2302, 2323 |
| NlaIV | GGNNCC | 3 cut(s) | 223, 835, 1670 |
| NmuCI | GTSAC | 3 cut(s) | 469, 932, 1854 |
| NspI | RCATGY | 5 cut(s) | 287, 1020, 1154, 2346, 2728 |
| PagI | TCATGA | 2 cut(s) | 1252, 1546 |
| PciI | ACATGT | 2 cut(s) | 283, 2724 |
| PdmI | GAANNNNTTC | 3 cut(s) | 574, 1125, 1722 |
| PflFI | GACNNNGTC | 1 cut(s) | 1352 |
| PfoI | TCCNGGA | 1 cut(s) | 946 |
| PkrI | GCNGC | 7 cut(s) | 17, 266, 439, 442, 455, 2254, 2376 |
| PleI | GAGTC | 5 cut(s) | 187, 890, 929, 2401, 2429 |
| PpsI | GAGTC | 5 cut(s) | 187, 890, 929, 2401, 2429 |
| Ppu21I | YACGTR | 1 cut(s) | 1499 |
| PscI | ACATGT | 2 cut(s) | 283, 2724 |
| PsiI | TTATAA | 2 cut(s) | 149, 965 |
| Psp124BI | GAGCTC | 1 cut(s) | 1059 |
| Psp1406I | AACGTT | 1 cut(s) | 1563 |
| Psp6I | CCWGG | 4 cut(s) | 182, 946, 1293, 2637 |
| PspFI | CCCAGC | 1 cut(s) | 2512 |
| PspGI | CCWGG | 4 cut(s) | 182, 946, 1293, 2637 |
| PspN4I | GGNNCC | 3 cut(s) | 223, 835, 1670 |
| PspPI | GGNCC | 9 cut(s) | 70, 124, 391, 409, 802, 834, 904, 944, 1348 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 14, 46 |
| PstI | CTGCAG | 1 cut(s) | 445 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1625 |
| PsuI | RGATCY | 3 cut(s) | 221, 414, 1505 |
| PsyI | GACNNNGTC | 1 cut(s) | 1352 |
| PvuII | CAGCTG | 1 cut(s) | 440 |
| RsaI | GTAC | 5 cut(s) | 23, 1407, 1497, 1645, 2596 |
| RsaNI | GTAC | 5 cut(s) | 22, 1406, 1496, 1644, 2595 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1551 |
| SacI | GAGCTC | 1 cut(s) | 1059 |
| SacII | CCGCGG | 1 cut(s) | 12 |
| SatI | GCNGC | 7 cut(s) | 16, 265, 438, 441, 454, 2253, 2375 |
| Sau3AI | GATC | 9 cut(s) | 221, 252, 414, 516, 617, 1435, 1505, 2302, 2323 |
| Sau96I | GGNCC | 9 cut(s) | 70, 124, 391, 409, 802, 834, 904, 944, 1348 |
| ScaI | AGTACT | 2 cut(s) | 1407, 2596 |
| SchI | GAGTC | 5 cut(s) | 188, 890, 929, 2401, 2429 |
| ScrFI | CCNGG | 5 cut(s) | 184, 948, 1295, 2316, 2639 |
| SduI | GDGCHC | 3 cut(s) | 1059, 2240, 2575 |
| SfcI | CTRYAG | 4 cut(s) | 441, 1164, 1531, 2273 |
| Sfr303I | CCGCGG | 1 cut(s) | 12 |
| SgrBI | CCGCGG | 1 cut(s) | 12 |
| SinI | GGWCC | 7 cut(s) | 70, 124, 391, 409, 834, 944, 1348 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1551 |
| SmlI | CTYRAG | 7 cut(s) | 34, 793, 1052, 1114, 1262, 1283, 1409 |
| SmoI | CTYRAG | 7 cut(s) | 34, 793, 1052, 1114, 1262, 1283, 1409 |
| SspI | AATATT | 3 cut(s) | 1882, 1936, 2367 |
| SspMI | CTAG | 3 cut(s) | 662, 1503, 2186 |
| SstI | GAGCTC | 1 cut(s) | 1059 |
| StyD4I | CCNGG | 5 cut(s) | 182, 946, 1293, 2314, 2637 |
| StyI | CCWWGG | 1 cut(s) | 837 |
| TaaI | ACNGT | 4 cut(s) | 1382, 1466, 2482, 2549 |
| TaiI | ACGT | 7 cut(s) | 30, 934, 1501, 1566, 1803, 1854, 2686 |
| TaqI | TCGA | 5 cut(s) | 303, 1474, 1812, 1953, 2135 |
| TaqII | GACCGA | 1 cut(s) | 141 |
| TatI | WGTACW | 3 cut(s) | 1405, 1643, 2594 |
| TauI | GCSGC | 3 cut(s) | 18, 456, 2377 |
| TscAI | CASTG | 4 cut(s) | 1711, 2182, 2254, 2458 |
| TseFI | GTSAC | 3 cut(s) | 469, 932, 1854 |
| TseI | GCWGC | 4 cut(s) | 264, 437, 440, 2252 |
| Tsp45I | GTSAC | 3 cut(s) | 469, 932, 1854 |
| TspGWI | ACGGA | 2 cut(s) | 83, 1601 |
| TspRI | CASTG | 4 cut(s) | 1711, 2182, 2254, 2458 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1352 |
| Vha464I | CTTAAG | 2 cut(s) | 1262, 1283 |
| VneI | GTGCAC | 2 cut(s) | 2236, 2571 |
| VpaK11BI | GGWCC | 7 cut(s) | 70, 124, 391, 409, 834, 944, 1348 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1095 |
| XapI | RAATTY | 5 cut(s) | 642, 1248, 2119, 2650, 2663 |
| XceI | RCATGY | 5 cut(s) | 287, 1020, 1154, 2346, 2728 |
| XmnI | GAANNNNTTC | 3 cut(s) | 574, 1125, 1722 |
| XspI | CTAG | 3 cut(s) | 662, 1503, 2186 |
| ZrmI | AGTACT | 2 cut(s) | 1407, 2596 |