MD07G1102800.v1.1

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
11638242 .. 11642018
3777 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1102800.v1.1.491

Sequence Viewer

Length: 2469 bp
ATGGATACCAGGGCAGCCCTTGAAGATTCCTCTTCAAAACAATGGAAACACGACGTGTTCCTAAGCTTCCGAGGTAAAGACACGCGCCGGACCTTCACCGACAACCTTTACTGGGCATTAAAGCACGACAGCGTCAACGTCTTCAGAGACGAAGAAAATCTTCAAAGAGGCGAAACTATAAGAGACGAGTTAGTGGAAGCAATCAAACGGTCTCAGATCGCCATTATTGTCTTCTCAAAAGGGTACGCGGATTCGAGATGGTGTCTTGACGAGCTGGAGACGATCGTGAAGTGTAGATCAACTATGGGGCAAACGGTCTTGCCGATATTCTATGATATTGATCCTTCACATGTTAGGGGTCAAACTGATAGTTTTGCAGAGCCATTTCAGAAATATGAACAGTGCTACCCGAAAGATAAGGTGCTGAGGTGGAGAGATGCTTTGACTCAAGCTGGAAGATTGGCTGGTGGGAATCTTGAAAACACTGATGGGTATGAAGGAAGGTTTATAAGGAAAATTGTTGACGATGTCACTAGAAGACTGAACAACACATACTCAGGTGTAGCCGCCAACCAAGTTGGAATAGATTCTCGTGTGCAACTGATCATCAATGAGTTAGATATTGGAGGATCAGATGATGTTCGCATTATTGGAATTTTGGGTATGGGTGGAACGGGTAAGTCAACGGTTGCACAAGCCATTATCAGCAGATTTAGACAAAGGTTTGACGCTACTTGTTTCCTTTCAAAAGTGAGGGAAGGGGATATGGTTAAATTGCAAAACAAACTTCTTTGTGATATCTTGAAACCAGCCAATGTAGAGGTAAGTACTGTCAATCAAGGGACCGAGGAGATAGAACGAAGACTTGGCAGCAAAAAGGTACTTGTCGTAATTGATGACGTTGATTGTGCGAAACAATTACATCAGTTAGCTATAAAACGTGACACCTTTGGCCCAGGGAGTAGAATTATTATAACAACAAGAGTCAAACAATTGCTAAAGATATTTAAAGTGGATAAGACATGTAACGCACAGATAATGAATAAACAAGAAGCTTTTGAGCTCTTTTGTTGCCATGCCTTTACTGAGCGTTGTCCTCCTGATAAAGAATATCTTGAACTCTCAAGCAAAGTTGTTGATTACTGCGGAGGTTTGCCACTAGCACTTGAGGTTTTAGGTTCTTATTTATGTACAAAACTCAAAAGTGAATGGAAAAGTGCCTTGAGTAAATTGAGAACATATCCTCATATGCAAATTCACGAACAGCTTAAAATAAGCTATGATGGGCTGATTGACGATGATGTGAAGGATATATTCCTTGATATATCTTGTTTCTTTATTGGAATGAACAAGGACCATGTCACAACAATATTGGATGGCTGTGACTTTAATCCAGAAATAGGAATTGGAGAACTACATGATCGATGTCTTGTAGCTATTGATGAAGGGAACAACCTGATAATGCATGATTTGCTTCGAGACATGGGCAGACAAATCGTACGCGCAAAATCCCCTAAAATCCCCGGAAAACGTTGTAGATTGTGGGATCAGGATGATGTCAAAGACGTATTGAGAAACAAATCTGGAACAGAGGAAGTTGAAGGACTCATGTTAGATTTGCAAGAATCCGACAAGCCTATCTTCTGTACAGAAGCACTTAAGGAGATGCAGGGACTGAGGTTGCTCAAACTGAAAGGCGTAAAGTTCACTGGAAACTGCCAACATCTTTCCAAAAAGTTAAGATGGTTGTGCTGGTCTGAGTTTCCTCTAAAGATCATACCAGAAGATTTTAATCAATCATACCTAGTTGATATTGACCTGAGTCATAGCGAAATACAATTTTGGAATGATTCAGACGTGCCGCTTGAGAAGTTGAAGTTTCTTAATCTTGGGTATTGCCGTCGCCTGAAAAGATCACCAGACTTTTCAAAACTCCCAAATCTCGAGAAGCTGCTACTCAATGATTGCGAGAGTTTGTCTAGGATTCACCCTTCCATAGTACAACTGAAGAACCTTAAACATTTATCTCTTGCGAACTGCAATCTAAAAAATGATGCAATTCCTAAGGATCTTGGGGGTCTATCTTCTTTAGAAGTTCTAGATCTACGTGGCAATAATTTTAATGTGCTACCCACCCTCAGTGGCCTTTCCAAGCTTCAACCTTTACAATGGGATAACTGTAAAAACCTTGAGGCAATCCCAGATTTACCAAAAAAATTGGAAATCTTGGAACCGGATGAATGCGCTGCGAAGGAAAAAGTGCCAGATTTTTCACATATGTTGAGTGTGATGGGATTGCATCAGAATCACTTTCCCGAATGGACTGAGATTCCAGGCATGGATAAGTTGTCAGACTCGGTGACAAGGATTCCCATTGAAGGGTGCACCGCTTGTGATGAAATTATCCTGCAGGTCCTCTCTCTCTCTCTTCGACCATCTCTCTCATGCACACATAAATGCATTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

823

Amino Acids

93.37

Weight (kDa)

6.2

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 16 - 186 1.3e-49 TIR domain
TIR_2 PF13676 19 - 115 3.2e-17 TIR domain
NB-ARC PF00931 198 - 363 1.2e-22 NB-ARC domain
WHD_ROQ1 PF23282 436 - 504 5.2e-17 Disease resistance protein Roq1-like, winged-helix domain
LRR_Zer-1 PF25013 621 - 691 1.3e-06 Zer-1-like, Leucine-rich repeats
LRR_14 PF23598 640 - 744 3.9e-09 Leucine-rich repeat region
LRR_8 PF13855 646 - 707 1e-05 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36930 AT5G36930 AT5G36930 AT5G36930
fragaria_vesca FvH4_3g45361 FvH4_3g45380 FvH4_5g21061 FvH4_5g21062 FvH4_5g21063 FvH4_5g32050 FvH4_5g32970 FvH4_5g32990 FvH4_5g34190 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34211 FvH4_5g34240 FvH4_5g34250
malus_domestica MD00G1011700.v1.1 MD00G1026100.v1.1 MD00G1026500.v1.1 MD00G1027000.v1.1 MD00G1027100.v1.1 MD00G1027700.v1.1 MD00G1027800.v1.1 MD00G1028000.v1.1 MD00G1220000.v1.1 MD02G1024400.v1.1 MD02G1024800.v1.1 MD02G1026000.v1.1 MD02G1026100.v1.1 MD02G1031800.v1.1 MD02G1038500.v1.1 MD02G1038700.v1.1 MD02G1039200.v1.1 MD02G1040600.v1.1 MD02G1040900.v1.1 MD02G1041200.v1.1 MD02G1041300.v1.1 MD02G1041700.v1.1 MD02G1042000.v1.1 MD02G1043800.v1.1 MD02G1043900.v1.1 MD02G1044300.v1.1 MD02G1045200.v1.1 MD02G1045300.v1.1 MD02G1051200.v1.1 MD02G1052200.v1.1 MD02G1052800.v1.1 MD02G1053100.v1.1 MD02G1053600.v1.1 MD02G1055500.v1.1 MD02G1063300.v1.1 MD02G1063400.v1.1 MD02G1063800.v1.1 MD02G1306500.v1.1 MD02G1306600.v1.1 MD02G1306700.v1.1 MD02G1306900.v1.1 MD02G1307200.v1.1 MD04G1011700.v1.1 MD05G1315400.v1.1 MD05G1316000.v1.1 MD05G1316700.v1.1 MD05G1317000.v1.1 MD05G1317300.v1.1 MD05G1317600.v1.1 MD05G1317700.v1.1 MD07G1102800.v1.1 MD07G1238200.v1.1 MD08G1175900.v1.1 MD08G1203600.v1.1 MD09G1024200.v1.1 MD09G1039600.v1.1 MD09G1044800.v1.1 MD09G1045100.v1.1 MD10G1038700.v1.1 MD10G1039000.v1.1 MD10G1039200.v1.1 MD10G1040000.v1.1 MD10G1040200.v1.1 MD10G1040600.v1.1 MD10G1040800.v1.1 MD10G1297300.v1.1 MD12G1247500.v1.1 MD12G1247900.v1.1 MD12G1248300.v1.1 MD12G1248800.v1.1 MD15G1103700.v1.1 MD15G1103800.v1.1 MD15G1104000.v1.1 MD15G1179600.v1.1 MD15G1182500.v1.1 MD16G1068200.v1.1 MD16G1068300.v1.1 MD17G1024600.v1.1 MD17G1024700.v1.1 MD17G1025000.v1.1 MD17G1025900.v1.1
prunus_persica Prupe.1G539800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G557100_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557300_v2.0.a1
pyrus_communis pycom02g02080 pycom02g02090 pycom02g02110 pycom02g03220 pycom02g03260 pycom02g03370 pycom02g03390 pycom02g03410 pycom02g03420 pycom02g03450 pycom02g03500 pycom02g03730 pycom02g03770 pycom02g04400 pycom02g04410 pycom02g04430 pycom02g04450 pycom02g04460 pycom02g04490 pycom02g05200 pycom02g25710 pycom02g25750 pycom02g25790 pycom02g25810 pycom02g25830 pycom04g00920 pycom04g00930 pycom04g00940 pycom05g29300 pycom05g29310 pycom05g29380 pycom05g29410 pycom07g06310 pycom07g21420 pycom08g15070 pycom08g17540 pycom08g17560 pycom08g17570 pycom10g02670 pycom10g02680 pycom10g02700 pycom10g02770 pycom10g02790 pycom10g02800 pycom10g02810 pycom10g25020 pycom10g25030 pycom10g25050 pycom10g25080 pycom111g01990 pycom111g02000 pycom111g02030 pycom111g02040 pycom111g02050 pycom111g02060 pycom12g22710 pycom12g22720 pycom12g22730 pycom12g22740 pycom12g22750 pycom12g22770 pycom12g22780 pycom12g22790 pycom12g22800 pycom12g22810 pycom12g22830 pycom12g22840 pycom12g22860 pycom15g09440 pycom15g09480 pycom15g16120 pycom15g32380 pycom16g05970 pycom17g02100
rosa_chinensis RchiOBHm_Chr2g0144661 RchiOBHm_Chr4g0407491 RchiOBHm_Chr4g0407501 RchiOBHm_Chr4g0412381 RchiOBHm_Chr7g0208191 RchiOBHm_Chr7g0208201 RchiOBHm_Chr7g0208211 RchiOBHm_Chr7g0208221 RchiOBHm_Chr7g0228071 RchiOBHm_Chr7g0228121 RchiOBHm_Chr7g0230971 RchiOBHm_Chr7g0230981 RchiOBHm_Chr7g0233901 RchiOBHm_Chr7g0233951 RchiOBHm_Chr7g0233961 RchiOBHm_Chr7g0233991 RchiOBHm_Chr7g0234021 RchiOBHm_Chr7g0234151 RchiOBHm_Chr7g0234161 RchiOBHm_Chr7g0234241 RchiOBHm_Chr7g0234501 RchiOBHm_Chr7g0234641 RchiOBHm_Chr7g0234771 RchiOBHm_Chr7g0234781 RchiOBHm_Chr7g0234991 RchiOBHm_Chr7g0241291 RchiOBHm_Chr7g0241301
rosa_laevigata RLG00000001186 RLG00000001187 RLG00000001212 RLG00000001226 RLG00000001233 RLG00000001590 RLG00000003242 RLG00000003243 RLG00000003249 RLG00000008688 RLG00000008690
rosa_multiflora Rmu_co7966574.1_g000001 Rmu_co8120830.1_g000001 Rmu_co8142226.1_g000001 Rmu_co8293083.1_g000001 Rmu_co8351227.1_g000001 Rmu_co8380159.1_g000001 Rmu_co8456505.1_g000001 Rmu_sc0000676.1_g000025 Rmu_sc0000706.1_g000018 Rmu_sc0000706.1_g000040 Rmu_sc0000740.1_g000029 Rmu_sc0000740.1_g000032 Rmu_sc0000740.1_g000037 Rmu_sc0000740.1_g000040 Rmu_sc0000762.1_g000003 Rmu_sc0000762.1_g000019 Rmu_sc0000762.1_g000034 Rmu_sc0000762.1_g000069 Rmu_sc0000892.1_g000001 Rmu_sc0000945.1_g000040 Rmu_sc0001913.1_g000037 Rmu_sc0001913.1_g000041 Rmu_sc0001913.1_g000049 Rmu_sc0002775.1_g000017 Rmu_sc0002775.1_g000018 Rmu_sc0002775.1_g000020 Rmu_sc0002775.1_g000021 Rmu_sc0002775.1_g000022 Rmu_sc0002775.1_g000025 Rmu_sc0002775.1_g000026 Rmu_sc0002775.1_g000028 Rmu_sc0002775.1_g000030 Rmu_sc0004858.1_g000002 Rmu_sc0004864.1_g000022 Rmu_sc0005038.1_g000023 Rmu_sc0005840.1_g000014 Rmu_sc0006724.1_g000003 Rmu_sc0006824.1_g000005 Rmu_sc0007869.1_g000003 Rmu_sc0007869.1_g000005 Rmu_sc0007869.1_g000008 Rmu_sc0008646.1_g000007 Rmu_sc0009637.1_g000009 Rmu_sc0010500.1_g000002 Rmu_sc0010500.1_g000012 Rmu_sc0012403.1_g000025 Rmu_sc0013768.1_g000025 Rmu_sc0015625.1_g000001 Rmu_sc0019715.1_g000001 Rmu_sc0021133.1_g000002 Rmu_sc0021904.1_g000001 Rmu_sc0021904.1_g000003 Rmu_sc0021904.1_g000004 Rmu_sc0022054.1_g000001 Rmu_sc0026025.1_g000001 Rmu_sc0036828.1_g000002 Rmu_sc0041808.1_g000001 Rmu_ssc0000012.1_g000001
rosa_roxburghii Rroxscaffold_3G00226370 Rroxscaffold_3G00226860 Rroxscaffold_3G00226900 Rroxscaffold_3G00226930 Rroxscaffold_3G00226940 Rroxscaffold_3G00226970 Rroxscaffold_3G00226980 Rroxscaffold_3G00231530 Rroxscaffold_3G00237090 Rroxscaffold_3G00250760 Rroxscaffold_3G00250800
rosa_rugosa Rorug04G0082300 Rorug07G0101800 Rorug07G0102000 Rorug07G0102100 Rorug07G0221200 Rorug07G0245700 Rorug07G0245700 Rorug07G0245700 Rorug07G0263900 Rorug07G0264000 Rorug07G0264000 Rorug07G0264500 Rorug07G0282900 Rorug07G0282900 Rorug07G0283100 Rorug07G0283200.1 Rorug07G0283300 Rorug07G0283900 Rorug07G0284000 Rorug07G0284100 Rorug07G0284300 Rorug07G0284400 Rorug07G0284500 Rorug07G0285000 Rorug07G0285200 Rorug07G0285300 Rorug07G0285500 Rorug07G0286800 Rorug07G0286900 Rorug07G0287100 Rorug07G0287200
rosa_samantha Rh7AG236100 Rh7AG236200 Rh7AG236300 Rh7AG440000 Rh7AG440100 Rh7BG411900 Rh7BG412000 Rh7BG412600 Rh7CG251300 Rh7CG417700 Rh7CG460100 Rh7DG242100 Rh7DG242200 Rh7DG242300 Rh7DG429300
rosa_wichuraiana Rw0G005070 Rw0G010780 Rw0G012530 Rw7G020110 Rw7G020160 Rw7G020170 Rw7G033210 Rw7G033230 Rw7G033250 Rw7G034540 Rw7G035150 Rw7G036190 Rw7G036210 Rw7G036260 Rw7G036270 Rw7G036290 Rw7G036300 Rw7G036310 Rw7G036350 Rw7G036360 Rw7G036440 Rw7G036510 Rw7G036530 Rw7G036570 Rw7G036590 Rw7G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 509, 974
Acc36I ACCTGC 1 cut(s) 2401
AccII CGCG 3 cut(s) 85, 248, 1503
AciI CCGC 5 cut(s) 248, 567, 1146, 1862, 2388
AclI AACGTT 1 cut(s) 1531
AclWI GGATC 4 cut(s) 335, 637, 1554, 2076
AcsI RAATTY 2 cut(s) 654, 1254
AcuI CTGAAG 2 cut(s) 127, 2027
AdeI CACNNNGTG 1 cut(s) 55
AfaI GTAC 7 cut(s) 245, 829, 882, 1192, 1500, 1648, 2001
AfiI CCNNNNNNNGG 4 cut(s) 112, 1400, 2378, 2379
AflII CTTAAG 1 cut(s) 1658
AflIII ACRYGT 3 cut(s) 54, 349, 1022
AjiI CACGTC 2 cut(s) 55, 1858
AjnI CCWGG 3 cut(s) 8, 955, 2332
AjuI GAANNNNNNNTTGG 4 cut(s) 849, 881, 1389, 1421
Alw21I GWGCWC 2 cut(s) 1065, 2387
Alw26I GTCTC 5 cut(s) 141, 177, 216, 272, 1473
Alw44I GTGCAC 1 cut(s) 2383
AlwI GGATC 4 cut(s) 335, 637, 1554, 2076
AlwNI CAGNNNCTG 1 cut(s) 1675
Ama87I CYCGRG 1 cut(s) 1943
AoxI GGCC 2 cut(s) 952, 2143
ApaLI GTGCAC 1 cut(s) 2383
ApeKI GCWGC 4 cut(s) 14, 870, 1951, 2246
ApoI RAATTY 2 cut(s) 654, 1254
Asp700I GAANNNNTTC 2 cut(s) 159, 586
AspLEI GCGC 3 cut(s) 87, 1505, 2246
AspS9I GGNCC 5 cut(s) 90, 843, 953, 1354, 2413
AsuC2I CCSGG 1 cut(s) 1524
AsuHPI GGTGA 4 cut(s) 88, 1908, 1979, 2371
AvaI CYCGRG 1 cut(s) 1943
AvaII GGWCC 4 cut(s) 90, 843, 1354, 2413
AxyI CCTNAGG 1 cut(s) 2064
BaeGI GKGCMC 1 cut(s) 2387
BanII GRGCYC 1 cut(s) 1065
BauI CACGAG 1 cut(s) 591
BbsI GAAGAC 4 cut(s) 133, 223, 544, 868
Bbv12I GWGCWC 2 cut(s) 1065, 2387
BbvCI CCTCAGC 1 cut(s) 425
BbvI GCAGC 4 cut(s) 26, 882, 1938, 2233
BccI CCATC 7 cut(s) 252, 482, 1277, 1370, 1737, 2284, 2443
BceAI ACGGC 1 cut(s) 1884
BcgI CGANNNNNNTGC 2 cut(s) 1477, 1511
BciT130I CCWGG 3 cut(s) 10, 957, 2334
BclI TGATCA 1 cut(s) 603
BcnI CCSGG 1 cut(s) 1524
BcoDI GTCTC 5 cut(s) 141, 177, 216, 272, 1473
BfaI CTAG 5 cut(s) 534, 1160, 1805, 1980, 2099
BfmI CTRYAG 1 cut(s) 2408
BfrI CTTAAG 1 cut(s) 1658
BfuAI ACCTGC 1 cut(s) 2401
BglII AGATCT 1 cut(s) 2101
BisI GCNGC 6 cut(s) 15, 567, 871, 1862, 1952, 2247
BlsI GCNGC 6 cut(s) 16, 568, 872, 1863, 1953, 2248
BmcAI AGTACT 1 cut(s) 829
Bme1390I CCNGG 4 cut(s) 10, 957, 1524, 2334
Bme18I GGWCC 4 cut(s) 90, 843, 1354, 2413
BmeT110I CYCGRG 1 cut(s) 1943
BmgBI CACGTC 2 cut(s) 55, 1858
BmgT120I GGNCC 5 cut(s) 90, 843, 953, 1354, 2413
BmiI GGNNCC 2 cut(s) 844, 2232
BmrFI CCNGG 4 cut(s) 10, 957, 1524, 2334
BmrI ACTGGG 1 cut(s) 121
BmsI GCATC 4 cut(s) 427, 1656, 2044, 2308
BmuI ACTGGG 1 cut(s) 121
BoxI GACNNNNGTC 1 cut(s) 1821
BpiI GAAGAC 4 cut(s) 133, 223, 544, 868
BpmI CTGGAG 1 cut(s) 296
Bpu10I CCTNAGC 2 cut(s) 62, 425
BpuEI CTTGAG 6 cut(s) 432, 1108, 1187, 1243, 1886, 2210
BpuMI CCSGG 1 cut(s) 1524
Bsa29I ATCGAT 1 cut(s) 1423
BsaAI YACGTR 1 cut(s) 2108
BsaBI GATNNNNATC 2 cut(s) 339, 1791
BsaI GGTCTC 1 cut(s) 216
BsaJI CCNNGG 6 cut(s) 9, 70, 846, 955, 956, 1522
BsaWI WCCGGW 1 cut(s) 2233
Bsc4I CCNNNNNNNGG 4 cut(s) 112, 1400, 2378, 2379
Bse1I ACTGG 2 cut(s) 116, 1714
Bse21I CCTNAGG 1 cut(s) 2064
Bse8I GATNNNNATC 2 cut(s) 339, 1791
BseBI CCWGG 3 cut(s) 10, 957, 2334
BseCI ATCGAT 1 cut(s) 1423
BseDI CCNNGG 6 cut(s) 9, 70, 846, 955, 956, 1522
BseGI GGATG 3 cut(s) 1381, 1558, 2242
BseJI GATNNNNATC 2 cut(s) 339, 1791
BseLI CCNNNNNNNGG 4 cut(s) 112, 1400, 2378, 2379
BseMII CTCAG 9 cut(s) 227, 416, 570, 1077, 1667, 1749, 1811, 2152, 2316
BseNI ACTGG 2 cut(s) 116, 1714
BseRI GAGGAG 1 cut(s) 863
BseSI GKGCMC 1 cut(s) 2387
BseXI GCAGC 4 cut(s) 26, 882, 1938, 2233
Bsh1236I CGCG 3 cut(s) 85, 248, 1503
Bsh1285I CGRYCG 1 cut(s) 285
BshFI GGCC 2 cut(s) 954, 2145
BshVI ATCGAT 1 cut(s) 1423
BsiEI CGRYCG 1 cut(s) 285
BsiHKAI GWGCWC 2 cut(s) 1065, 2387
BsiHKCI CYCGRG 1 cut(s) 1943
BsiSI CCGG 3 cut(s) 88, 1524, 2234
BsiWI CGTACG 1 cut(s) 1498
BslFI GGGAC 2 cut(s) 856, 1686
BslI CCNNNNNNNGG 4 cut(s) 112, 1400, 2378, 2379
BsmAI GTCTC 5 cut(s) 141, 177, 216, 272, 1473
BsmBI CGTCTC 3 cut(s) 141, 177, 272
BsmFI GGGAC 2 cut(s) 856, 1686
BsmI GAATGC 1 cut(s) 2246
BsnI GGCC 2 cut(s) 954, 2145
Bso31I GGTCTC 1 cut(s) 216
BsoBI CYCGRG 1 cut(s) 1943
Bsp1286I GDGCHC 2 cut(s) 1065, 2387
Bsp1407I TGTACA 2 cut(s) 1190, 1646
BspACI CCGC 5 cut(s) 248, 567, 1146, 1862, 2388
BspANI GGCC 2 cut(s) 954, 2145
BspCNI CTCAG 9 cut(s) 226, 417, 569, 1078, 1668, 1750, 1812, 2151, 2317
BspDI ATCGAT 1 cut(s) 1423
BspFNI CGCG 3 cut(s) 85, 248, 1503
BspLI GGNNCC 2 cut(s) 844, 2232
BspMAI CTGCAG 1 cut(s) 2412
BspMI ACCTGC 1 cut(s) 2401
BspPI GGATC 4 cut(s) 335, 637, 1554, 2076
BspTI CTTAAG 1 cut(s) 1658
BspTNI GGTCTC 1 cut(s) 216
BsrGI TGTACA 2 cut(s) 1190, 1646
BsrI ACTGG 2 cut(s) 116, 1714
BssECI CCNNGG 6 cut(s) 9, 70, 846, 955, 956, 1522
BssSI CACGAG 1 cut(s) 591
Bst2BI CACGAG 1 cut(s) 591
Bst2UI CCWGG 3 cut(s) 10, 957, 2334
Bst4CI ACNGT 6 cut(s) 210, 316, 402, 688, 832, 2180
Bst6I CTCTTC 2 cut(s) 37, 2433
BstAFI CTTAAG 1 cut(s) 1658
BstAPI GCANNNNNTGC 1 cut(s) 1471
BstAUI TGTACA 2 cut(s) 1190, 1646
BstBAI YACGTR 1 cut(s) 2108
BstF5I GGATG 3 cut(s) 1381, 1558, 2242
BstFNI CGCG 3 cut(s) 85, 248, 1503
BstHHI GCGC 3 cut(s) 87, 1505, 2246
BstMAI GTCTC 5 cut(s) 141, 177, 216, 272, 1473
BstMCI CGRYCG 1 cut(s) 285
BstMWI GCNNNNNNNGC 1 cut(s) 1471
BstNI CCWGG 3 cut(s) 10, 957, 2334
BstNSI RCATGY 2 cut(s) 353, 1026
BstPAI GACNNNNGTC 1 cut(s) 1821
BstSCI CCNGG 4 cut(s) 8, 955, 1522, 2332
BstSFI CTRYAG 1 cut(s) 2408
BstSLI GKGCMC 1 cut(s) 2387
BstUI CGCG 3 cut(s) 85, 248, 1503
BstV1I GCAGC 4 cut(s) 26, 882, 1938, 2233
BstV2I GAAGAC 4 cut(s) 133, 223, 544, 868
BstX2I RGATCY 2 cut(s) 2068, 2101
BstYI RGATCY 2 cut(s) 2068, 2101
Bsu15I ATCGAT 1 cut(s) 1423
Bsu36I CCTNAGG 1 cut(s) 2064
BsuRI GGCC 2 cut(s) 954, 2145
BsuTUI ATCGAT 1 cut(s) 1423
BtrI CACGTC 2 cut(s) 55, 1858
BtsCI GGATG 3 cut(s) 1381, 1558, 2242
BtsIMutI CAGTG 4 cut(s) 407, 483, 1707, 2146
BveI ACCTGC 1 cut(s) 2401
CaiI CAGNNNCTG 1 cut(s) 1675
CfoI GCGC 3 cut(s) 87, 1505, 2246
Cfr13I GGNCC 5 cut(s) 90, 843, 953, 1354, 2413
ClaI ATCGAT 1 cut(s) 1423
CseI GACGC 2 cut(s) 121, 737
Csp6I GTAC 7 cut(s) 244, 828, 881, 1191, 1499, 1647, 2000
CviQI GTAC 7 cut(s) 244, 828, 881, 1191, 1499, 1647, 2000
DraI TTTAAA 1 cut(s) 1009
DraIII CACNNNGTG 1 cut(s) 55
Eam1104I CTCTTC 2 cut(s) 37, 2433
EarI CTCTTC 2 cut(s) 37, 2433
Ecl136II GAGCTC 1 cut(s) 1063
Eco24I GRGCYC 1 cut(s) 1065
Eco31I GGTCTC 1 cut(s) 216
Eco32I GATATC 1 cut(s) 799
Eco47I GGWCC 4 cut(s) 90, 843, 1354, 2413
Eco53kI GAGCTC 1 cut(s) 1063
Eco57I CTGAAG 2 cut(s) 127, 2027
Eco81I CCTNAGG 1 cut(s) 2064
Eco88I CYCGRG 1 cut(s) 1943
EcoICRI GAGCTC 1 cut(s) 1063
EcoO109I RGGNCCY 1 cut(s) 2413
EcoRII CCWGG 3 cut(s) 8, 955, 2332
EcoRV GATATC 1 cut(s) 799
EcoT22I ATGCAT 2 cut(s) 1467, 2462
EcoT38I GRGCYC 1 cut(s) 1065
Esp3I CGTCTC 3 cut(s) 141, 177, 272
FalI AAGNNNNNCTT 6 cut(s) 144, 176, 1098, 1130, 1625, 1657
FaqI GGGAC 2 cut(s) 856, 1686
FauNDI CATATG 2 cut(s) 1248, 2277
FbaI TGATCA 1 cut(s) 603
Fnu4HI GCNGC 6 cut(s) 15, 567, 871, 1862, 1952, 2247
FokI GGATG 3 cut(s) 1388, 1565, 2249
FriOI GRGCYC 1 cut(s) 1065
Fsp4HI GCNGC 6 cut(s) 15, 567, 871, 1862, 1952, 2247
FspBI CTAG 5 cut(s) 534, 1160, 1805, 1980, 2099
GlaI GCGC 3 cut(s) 86, 1504, 2245
GluI GCNGC 6 cut(s) 15, 567, 871, 1862, 1952, 2247
GsuI CTGGAG 1 cut(s) 296
HaeIII GGCC 2 cut(s) 954, 2145
HapII CCGG 3 cut(s) 88, 1524, 2234
HgaI GACGC 2 cut(s) 121, 737
HhaI GCGC 3 cut(s) 87, 1505, 2246
Hin6I GCGC 3 cut(s) 85, 1503, 2244
HinP1I GCGC 3 cut(s) 85, 1503, 2244
HincII GTYRAC 3 cut(s) 136, 523, 684
HindII GTYRAC 3 cut(s) 136, 523, 684
HindIII AAGCTT 3 cut(s) 64, 1053, 2153
HpaII CCGG 3 cut(s) 88, 1524, 2234
HphI GGTGA 4 cut(s) 88, 1908, 1979, 2371
Hpy166II GTNNAC 5 cut(s) 136, 523, 684, 1707, 2385
Hpy8I GTNNAC 5 cut(s) 136, 523, 684, 1707, 2385
Hpy99I CGWCG 2 cut(s) 56, 1905
HpyCH4III ACNGT 6 cut(s) 210, 316, 402, 688, 832, 2180
HpyCH4IV ACGT 8 cut(s) 54, 138, 900, 940, 1531, 1566, 1857, 2107
HpyF10VI GCNNNNNNNGC 1 cut(s) 1471
HpySE526I ACGT 8 cut(s) 54, 138, 900, 940, 1531, 1566, 1857, 2107
HspAI GCGC 3 cut(s) 85, 1503, 2244
Ksp22I TGATCA 1 cut(s) 603
Lsp1109I GCAGC 4 cut(s) 26, 882, 1938, 2233
LweI GCATC 4 cut(s) 427, 1656, 2044, 2308
MaeI CTAG 5 cut(s) 534, 1160, 1805, 1980, 2099
MaeII ACGT 8 cut(s) 54, 138, 900, 940, 1531, 1566, 1857, 2107
MaeIII GTNAC 6 cut(s) 529, 941, 1025, 1360, 1382, 2359
MfeI CAATTG 1 cut(s) 992
MflI RGATCY 2 cut(s) 2068, 2101
MhlI GDGCHC 2 cut(s) 1065, 2387
MlyI GAGTC 5 cut(s) 439, 993, 1599, 1831, 2348
MmeI TCCRAC 2 cut(s) 559, 1653
Mph1103I ATGCAT 2 cut(s) 1467, 2462
MroXI GAANNNNTTC 2 cut(s) 159, 586
MslI CAYNNNNRTG 1 cut(s) 2455
MspCI CTTAAG 1 cut(s) 1658
MspI CCGG 3 cut(s) 88, 1524, 2234
MspR9I CCNGG 4 cut(s) 10, 957, 1524, 2334
MunI CAATTG 1 cut(s) 992
Mva1269I GAATGC 1 cut(s) 2246
MvaI CCWGG 3 cut(s) 10, 957, 2334
MvnI CGCG 3 cut(s) 85, 248, 1503
MwoI GCNNNNNNNGC 1 cut(s) 1471
NciI CCSGG 1 cut(s) 1524
NdeI CATATG 2 cut(s) 1248, 2277
NlaIV GGNNCC 2 cut(s) 844, 2232
NmuCI GTSAC 5 cut(s) 529, 941, 1360, 1382, 2359
NsiI ATGCAT 2 cut(s) 1467, 2462
NspI RCATGY 2 cut(s) 353, 1026
PaeR7I CTCGAG 1 cut(s) 1943
PasI CCCWGGG 1 cut(s) 956
PciI ACATGT 2 cut(s) 349, 1022
PcsI WCGNNNNNNNCGW 1 cut(s) 320
PctI GAATGC 1 cut(s) 2246
PdmI GAANNNNTTC 2 cut(s) 159, 586
Pfl23II CGTACG 1 cut(s) 1498
PflFI GACNNNGTC 3 cut(s) 131, 527, 1358
PkrI GCNGC 6 cut(s) 16, 568, 872, 1863, 1953, 2248
Ple19I CGATCG 1 cut(s) 285
PleI GAGTC 5 cut(s) 439, 992, 1599, 1830, 2348
PpsI GAGTC 5 cut(s) 439, 992, 1599, 1830, 2348
Ppu21I YACGTR 1 cut(s) 2108
PpuMI RGGWCCY 1 cut(s) 2413
PscI ACATGT 2 cut(s) 349, 1022
PshAI GACNNNNGTC 1 cut(s) 1821
PsiI TTATAA 2 cut(s) 509, 974
Psp124BI GAGCTC 1 cut(s) 1065
Psp1406I AACGTT 1 cut(s) 1531
Psp5II RGGWCCY 1 cut(s) 2413
Psp6I CCWGG 3 cut(s) 8, 955, 2332
PspGI CCWGG 3 cut(s) 8, 955, 2332
PspLI CGTACG 1 cut(s) 1498
PspN4I GGNNCC 2 cut(s) 844, 2232
PspPI GGNCC 5 cut(s) 90, 843, 953, 1354, 2413
PspPPI RGGWCCY 1 cut(s) 2413
PsrI GAACNNNNNNTAC 2 cut(s) 536, 568
PstI CTGCAG 1 cut(s) 2412
PstNI CAGNNNCTG 1 cut(s) 1675
PsuI RGATCY 2 cut(s) 2068, 2101
PsyI GACNNNGTC 3 cut(s) 131, 527, 1358
PvuI CGATCG 1 cut(s) 285
RsaI GTAC 7 cut(s) 245, 829, 882, 1192, 1500, 1648, 2001
RsaNI GTAC 7 cut(s) 244, 828, 881, 1191, 1499, 1647, 2000
RseI CAYNNNNRTG 1 cut(s) 2455
SacI GAGCTC 1 cut(s) 1065
SatI GCNGC 6 cut(s) 15, 567, 871, 1862, 1952, 2247
Sau96I GGNCC 5 cut(s) 90, 843, 953, 1354, 2413
SbfI CCTGCAGG 1 cut(s) 2412
ScaI AGTACT 1 cut(s) 829
SchI GAGTC 5 cut(s) 439, 993, 1599, 1831, 2348
ScrFI CCNGG 4 cut(s) 10, 957, 1524, 2334
SdaI CCTGCAGG 1 cut(s) 2412
SduI GDGCHC 2 cut(s) 1065, 2387
SfaNI GCATC 4 cut(s) 427, 1656, 2044, 2308
SfcI CTRYAG 1 cut(s) 2408
Sfr274I CTCGAG 1 cut(s) 1943
SinI GGWCC 4 cut(s) 90, 843, 1354, 2413
SlaI CTCGAG 1 cut(s) 1943
SmiMI CAYNNNNRTG 1 cut(s) 2455
SmlI CTYRAG 8 cut(s) 447, 1123, 1166, 1222, 1658, 1865, 1943, 2189
SmoI CTYRAG 8 cut(s) 447, 1123, 1166, 1222, 1658, 1865, 1943, 2189
Sse8387I CCTGCAGG 1 cut(s) 2412
SsiI CCGC 5 cut(s) 248, 567, 1146, 1862, 2388
SspI AATATT 1 cut(s) 1371
SspMI CTAG 5 cut(s) 534, 1160, 1805, 1980, 2099
SstI GAGCTC 1 cut(s) 1065
StyD4I CCNGG 4 cut(s) 8, 955, 1522, 2332
TaaI ACNGT 6 cut(s) 210, 316, 402, 688, 832, 2180
TaiI ACGT 8 cut(s) 57, 141, 903, 943, 1534, 1569, 1860, 2110
TaqI TCGA 5 cut(s) 254, 1423, 1477, 1944, 2431
TaqII GACCGA 1 cut(s) 860
TatI WGTACW 4 cut(s) 827, 1190, 1646, 1999
TauI GCSGC 2 cut(s) 569, 1864
TscAI CASTG 4 cut(s) 407, 490, 1714, 2146
TseFI GTSAC 5 cut(s) 529, 941, 1360, 1382, 2359
TseI GCWGC 4 cut(s) 14, 870, 1951, 2246
Tsp45I GTSAC 5 cut(s) 529, 941, 1360, 1382, 2359
TspDTI ATGAA 7 cut(s) 411, 510, 1055, 1361, 1458, 2253, 2412
TspRI CASTG 4 cut(s) 407, 490, 1714, 2146
Tth111I GACNNNGTC 3 cut(s) 131, 527, 1358
Vha464I CTTAAG 1 cut(s) 1658
VneI GTGCAC 1 cut(s) 2383
VpaK11BI GGWCC 4 cut(s) 90, 843, 1354, 2413
XapI RAATTY 2 cut(s) 654, 1254
XbaI TCTAGA 1 cut(s) 2098
XceI RCATGY 2 cut(s) 353, 1026
XhoI CTCGAG 1 cut(s) 1943
XmnI GAANNNNTTC 2 cut(s) 159, 586
XspI CTAG 5 cut(s) 534, 1160, 1805, 1980, 2099
ZrmI AGTACT 1 cut(s) 829
Zsp2I ATGCAT 2 cut(s) 1467, 2462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.