TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 25 - 188 | 3e-54 | TIR domain |
| TIR_2 | PF13676 | 27 - 141 | 7.8e-16 | TIR domain |
| NB-ARC | PF00931 | 206 - 372 | 9.3e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 444 - 514 | 1.6e-17 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 633 - 735 | 2.9e-06 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 742 - 846 | 5.6e-08 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 6 cut(s) | 542, 632, 732, 923, 1007, 1463 |
| Acc36I | ACCTGC | 1 cut(s) | 1857 |
| AccB1I | GGYRCC | 1 cut(s) | 1455 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 799 |
| AccII | CGCG | 3 cut(s) | 506, 618, 620 |
| AccIII | TCCGGA | 2 cut(s) | 375, 2365 |
| AciI | CCGC | 6 cut(s) | 506, 620, 1852, 2835, 3038, 3126 |
| AclI | AACGTT | 1 cut(s) | 2730 |
| AclWI | GGATC | 7 cut(s) | 245, 356, 884, 1429, 1442, 2310, 2816 |
| AcoI | YGGCCR | 2 cut(s) | 493, 2881 |
| AcsI | RAATTY | 7 cut(s) | 681, 1817, 1900, 2479, 2644, 2844, 3064 |
| AcuI | CTGAAG | 6 cut(s) | 76, 351, 495, 1407, 1680, 2513 |
| AcvI | CACGTG | 1 cut(s) | 1399 |
| AfeI | AGCGCT | 1 cut(s) | 425 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 799, 1801, 2237 |
| AflIII | ACRYGT | 2 cut(s) | 1396, 2537 |
| AhlI | ACTAGT | 1 cut(s) | 3026 |
| AjnI | CCWGG | 3 cut(s) | 1287, 2089, 2707 |
| AleI | CACNNNNGTG | 1 cut(s) | 1397 |
| Alw21I | GWGCWC | 4 cut(s) | 1098, 1896, 2624, 3219 |
| Alw26I | GTCTC | 6 cut(s) | 373, 871, 969, 1503, 2271, 3035 |
| Alw44I | GTGCAC | 1 cut(s) | 2620 |
| AlwI | GGATC | 7 cut(s) | 245, 356, 884, 1429, 1442, 2310, 2816 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1705 |
| Ama87I | CYCGRG | 2 cut(s) | 1895, 1973 |
| Aor13HI | TCCGGA | 2 cut(s) | 375, 2365 |
| Aor51HI | AGCGCT | 1 cut(s) | 425 |
| AoxI | GGCC | 4 cut(s) | 124, 150, 493, 2881 |
| ApaLI | GTGCAC | 1 cut(s) | 2620 |
| ApeKI | GCWGC | 2 cut(s) | 479, 2277 |
| ApoI | RAATTY | 7 cut(s) | 681, 1817, 1900, 2479, 2644, 2844, 3064 |
| AseI | ATTAAT | 1 cut(s) | 3324 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1026 |
| AspLEI | GCGC | 3 cut(s) | 14, 426, 620 |
| AspS9I | GGNCC | 5 cut(s) | 124, 843, 1127, 2368, 3191 |
| AsuHPI | GGTGA | 7 cut(s) | 36, 110, 310, 1334, 1938, 2831, 3258 |
| AvaI | CYCGRG | 2 cut(s) | 1895, 1973 |
| AvaII | GGWCC | 4 cut(s) | 843, 1127, 2368, 3191 |
| AxyI | CCTNAGG | 1 cut(s) | 2298 |
| BaeGI | GKGCMC | 1 cut(s) | 2624 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1875, 1908, 2211, 2244 |
| BalI | TGGCCA | 2 cut(s) | 495, 2883 |
| BamHI | GGATCC | 1 cut(s) | 1434 |
| BanI | GGYRCC | 1 cut(s) | 1455 |
| BanII | GRGCYC | 1 cut(s) | 1098 |
| BauI | CACGAG | 1 cut(s) | 1278 |
| BbrPI | CACGTG | 1 cut(s) | 1399 |
| BbsI | GAAGAC | 5 cut(s) | 108, 244, 901, 2516, 2534 |
| Bbv12I | GWGCWC | 4 cut(s) | 1098, 1896, 2624, 3219 |
| BbvI | GCAGC | 2 cut(s) | 466, 2264 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3128, 3162 |
| BciT130I | CCWGG | 3 cut(s) | 1289, 2091, 2709 |
| BciVI | GTATCC | 1 cut(s) | 1876 |
| BcoDI | GTCTC | 6 cut(s) | 373, 871, 969, 1503, 2271, 3035 |
| BcuI | ACTAGT | 1 cut(s) | 3026 |
| BfaI | CTAG | 5 cut(s) | 1319, 1643, 1835, 2339, 3027 |
| BfmI | CTRYAG | 4 cut(s) | 711, 870, 1677, 2235 |
| BfoI | RGCGCY | 1 cut(s) | 427 |
| BfuAI | ACCTGC | 1 cut(s) | 1857 |
| BfuI | GTATCC | 1 cut(s) | 1876 |
| BglII | AGATCT | 1 cut(s) | 2335 |
| BisI | GCNGC | 3 cut(s) | 480, 2278, 3127 |
| BlsI | GCNGC | 3 cut(s) | 481, 2279, 3128 |
| Bme1390I | CCNGG | 3 cut(s) | 1289, 2091, 2709 |
| Bme18I | GGWCC | 4 cut(s) | 843, 1127, 2368, 3191 |
| BmeT110I | CYCGRG | 2 cut(s) | 1895, 1973 |
| BmgT120I | GGNCC | 5 cut(s) | 124, 843, 1127, 2368, 3191 |
| BmiI | GGNNCC | 3 cut(s) | 844, 1436, 1457 |
| BmrFI | CCNGG | 3 cut(s) | 1289, 2091, 2709 |
| BmrI | ACTGGG | 2 cut(s) | 335, 1896 |
| BmsI | GCATC | 8 cut(s) | 391, 454, 649, 1482, 1585, 2419, 2628, 2652 |
| BmuI | ACTGGG | 2 cut(s) | 335, 1896 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2373 |
| BpiI | GAAGAC | 5 cut(s) | 108, 244, 901, 2516, 2534 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 451, 483, 453, 485 |
| BpmI | CTGGAG | 3 cut(s) | 717, 1761, 2819 |
| Bpu10I | CCTNAGC | 1 cut(s) | 961 |
| BpuEI | CTTGAG | 7 cut(s) | 106, 217, 308, 1112, 1166, 2063, 2889 |
| BsaAI | YACGTR | 1 cut(s) | 1399 |
| BsaBI | GATNNNNATC | 3 cut(s) | 360, 936, 2334 |
| BsaJI | CCNNGG | 4 cut(s) | 846, 1552, 2089, 2977 |
| BsaWI | WCCGGW | 3 cut(s) | 275, 375, 2365 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1080, 1110 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 799, 1801, 2237 |
| Bse118I | RCCGGY | 1 cut(s) | 8 |
| Bse21I | CCTNAGG | 1 cut(s) | 2298 |
| Bse3DI | GCAATG | 1 cut(s) | 2402 |
| Bse8I | GATNNNNATC | 3 cut(s) | 360, 936, 2334 |
| BseAI | TCCGGA | 2 cut(s) | 375, 2365 |
| BseBI | CCWGG | 3 cut(s) | 1289, 2091, 2709 |
| BseDI | CCNNGG | 4 cut(s) | 846, 1552, 2089, 2977 |
| BseGI | GGATG | 5 cut(s) | 696, 1411, 1576, 2643, 2810 |
| BseJI | GATNNNNATC | 3 cut(s) | 360, 936, 2334 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 799, 1801, 2237 |
| BseMI | GCAATG | 1 cut(s) | 2402 |
| BseMII | CTCAG | 8 cut(s) | 173, 255, 540, 1022, 1697, 2386, 2507, 2621 |
| BseRI | GAGGAG | 4 cut(s) | 204, 305, 3194, 3197 |
| BseSI | GKGCMC | 1 cut(s) | 2624 |
| BseXI | GCAGC | 2 cut(s) | 466, 2264 |
| BseYI | CCCAGC | 1 cut(s) | 3088 |
| BsgI | GTGCAG | 3 cut(s) | 236, 1008, 2610 |
| Bsh1236I | CGCG | 3 cut(s) | 506, 618, 620 |
| BshFI | GGCC | 4 cut(s) | 126, 152, 495, 2883 |
| BshNI | GGYRCC | 1 cut(s) | 1455 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1098, 1896, 2624, 3219 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1895, 1973 |
| BsiSI | CCGG | 5 cut(s) | 9, 153, 276, 376, 2366 |
| BslFI | GGGAC | 3 cut(s) | 856, 3105, 3188 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 799, 1801, 2237 |
| BsmAI | GTCTC | 6 cut(s) | 373, 871, 969, 1503, 2271, 3035 |
| BsmFI | GGGAC | 3 cut(s) | 856, 3105, 3188 |
| BsnI | GGCC | 4 cut(s) | 126, 152, 495, 2883 |
| BsoBI | CYCGRG | 2 cut(s) | 1895, 1973 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1098, 1896, 2624, 3219 |
| Bsp13I | TCCGGA | 2 cut(s) | 375, 2365 |
| Bsp1407I | TGTACA | 2 cut(s) | 1220, 2558 |
| BspACI | CCGC | 6 cut(s) | 506, 620, 1852, 2835, 3038, 3126 |
| BspANI | GGCC | 4 cut(s) | 126, 152, 495, 2883 |
| BspCNI | CTCAG | 8 cut(s) | 174, 254, 541, 1023, 1698, 2385, 2508, 2622 |
| BspEI | TCCGGA | 2 cut(s) | 375, 2365 |
| BspFNI | CGCG | 3 cut(s) | 506, 618, 620 |
| BspLI | GGNNCC | 3 cut(s) | 844, 1436, 1457 |
| BspMAI | CTGCAG | 1 cut(s) | 874 |
| BspMI | ACCTGC | 1 cut(s) | 1857 |
| BspPI | GGATC | 7 cut(s) | 245, 356, 884, 1429, 1442, 2310, 2816 |
| BspQI | GCTCTTC | 1 cut(s) | 414 |
| BspT107I | GGYRCC | 1 cut(s) | 1455 |
| BsrDI | GCAATG | 1 cut(s) | 2402 |
| BsrFI | RCCGGY | 1 cut(s) | 8 |
| BsrGI | TGTACA | 2 cut(s) | 1220, 2558 |
| BssAI | RCCGGY | 1 cut(s) | 8 |
| BssECI | CCNNGG | 4 cut(s) | 846, 1552, 2089, 2977 |
| BssSI | CACGAG | 1 cut(s) | 1278 |
| BssT1I | CCWWGG | 3 cut(s) | 846, 1552, 2977 |
| Bst2BI | CACGAG | 1 cut(s) | 1278 |
| Bst2UI | CCWGG | 3 cut(s) | 1289, 2091, 2709 |
| Bst4CI | ACNGT | 8 cut(s) | 579, 715, 1252, 1455, 1997, 2265, 2472, 2879 |
| Bst6I | CTCTTC | 6 cut(s) | 181, 414, 2202, 2565, 3159, 3171 |
| BstAUI | TGTACA | 2 cut(s) | 1220, 2558 |
| BstBAI | YACGTR | 1 cut(s) | 1399 |
| BstC8I | GCNNGC | 5 cut(s) | 219, 1110, 1152, 1533, 1862 |
| BstF5I | GGATG | 5 cut(s) | 696, 1411, 1576, 2643, 2810 |
| BstFNI | CGCG | 3 cut(s) | 506, 618, 620 |
| BstH2I | RGCGCY | 1 cut(s) | 427 |
| BstHHI | GCGC | 3 cut(s) | 14, 426, 620 |
| BstMAI | GTCTC | 6 cut(s) | 373, 871, 969, 1503, 2271, 3035 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 11, 123, 1492, 1783, 2511, 2963 |
| BstNI | CCWGG | 3 cut(s) | 1289, 2091, 2709 |
| BstNSI | RCATGY | 2 cut(s) | 1112, 2541 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2373 |
| BstSCI | CCNGG | 3 cut(s) | 1287, 2089, 2707 |
| BstSFI | CTRYAG | 4 cut(s) | 711, 870, 1677, 2235 |
| BstSLI | GKGCMC | 1 cut(s) | 2624 |
| BstUI | CGCG | 3 cut(s) | 506, 618, 620 |
| BstV1I | GCAGC | 2 cut(s) | 466, 2264 |
| BstV2I | GAAGAC | 5 cut(s) | 108, 244, 901, 2516, 2534 |
| BstX2I | RGATCY | 4 cut(s) | 237, 1434, 2302, 2335 |
| BstYI | RGATCY | 4 cut(s) | 237, 1434, 2302, 2335 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2298 |
| BsuI | GTATCC | 1 cut(s) | 1876 |
| BsuRI | GGCC | 4 cut(s) | 126, 152, 495, 2883 |
| BtsCI | GGATG | 5 cut(s) | 696, 1411, 1576, 2643, 2810 |
| BtsI | GCAGTG | 1 cut(s) | 2622 |
| BtsIMutI | CAGTG | 6 cut(s) | 249, 323, 471, 1187, 2622, 2627 |
| BveI | ACCTGC | 1 cut(s) | 1857 |
| Cac8I | GCNNGC | 5 cut(s) | 219, 1110, 1152, 1533, 1862 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1705 |
| CfoI | GCGC | 3 cut(s) | 14, 426, 620 |
| Cfr10I | RCCGGY | 1 cut(s) | 8 |
| Cfr13I | GGNCC | 5 cut(s) | 124, 843, 1127, 2368, 3191 |
| CseI | GACGC | 1 cut(s) | 1876 |
| DraI | TTTAAA | 4 cut(s) | 409, 1690, 1914, 2478 |
| EaeI | YGGCCR | 2 cut(s) | 493, 2881 |
| Eam1104I | CTCTTC | 6 cut(s) | 181, 414, 2202, 2565, 3159, 3171 |
| EarI | CTCTTC | 6 cut(s) | 181, 414, 2202, 2565, 3159, 3171 |
| EciI | GGCGGA | 1 cut(s) | 2850 |
| Ecl136II | GAGCTC | 1 cut(s) | 1096 |
| Eco130I | CCWWGG | 3 cut(s) | 846, 1552, 2977 |
| Eco24I | GRGCYC | 1 cut(s) | 1098 |
| Eco32I | GATATC | 1 cut(s) | 832 |
| Eco47I | GGWCC | 4 cut(s) | 843, 1127, 2368, 3191 |
| Eco47III | AGCGCT | 1 cut(s) | 425 |
| Eco53kI | GAGCTC | 1 cut(s) | 1096 |
| Eco57I | CTGAAG | 6 cut(s) | 76, 351, 495, 1407, 1680, 2513 |
| Eco72I | CACGTG | 1 cut(s) | 1399 |
| Eco81I | CCTNAGG | 1 cut(s) | 2298 |
| Eco88I | CYCGRG | 2 cut(s) | 1895, 1973 |
| EcoICRI | GAGCTC | 1 cut(s) | 1096 |
| EcoRII | CCWGG | 3 cut(s) | 1287, 2089, 2707 |
| EcoRV | GATATC | 1 cut(s) | 832 |
| EcoT14I | CCWWGG | 3 cut(s) | 846, 1552, 2977 |
| EcoT22I | ATGCAT | 2 cut(s) | 1114, 1497 |
| EcoT38I | GRGCYC | 1 cut(s) | 1098 |
| ErhI | CCWWGG | 3 cut(s) | 846, 1552, 2977 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1074, 1106 |
| FaqI | GGGAC | 3 cut(s) | 856, 3105, 3188 |
| FauNDI | CATATG | 1 cut(s) | 3160 |
| Fnu4HI | GCNGC | 3 cut(s) | 480, 2278, 3127 |
| FokI | GGATG | 5 cut(s) | 703, 1418, 1563, 2650, 2817 |
| FriOI | GRGCYC | 1 cut(s) | 1098 |
| Fsp4HI | GCNGC | 3 cut(s) | 480, 2278, 3127 |
| FspBI | CTAG | 5 cut(s) | 1319, 1643, 1835, 2339, 3027 |
| GlaI | GCGC | 3 cut(s) | 13, 425, 619 |
| GluI | GCNGC | 3 cut(s) | 480, 2278, 3127 |
| GsaI | CCCAGC | 1 cut(s) | 3092 |
| GsuI | CTGGAG | 3 cut(s) | 717, 1761, 2819 |
| HaeII | RGCGCY | 1 cut(s) | 427 |
| HaeIII | GGCC | 4 cut(s) | 126, 152, 495, 2883 |
| HapII | CCGG | 5 cut(s) | 9, 153, 276, 376, 2366 |
| HgaI | GACGC | 1 cut(s) | 1876 |
| HhaI | GCGC | 3 cut(s) | 14, 426, 620 |
| Hin6I | GCGC | 3 cut(s) | 12, 424, 618 |
| HinP1I | GCGC | 3 cut(s) | 12, 424, 618 |
| HincII | GTYRAC | 1 cut(s) | 1602 |
| HindII | GTYRAC | 1 cut(s) | 1602 |
| HpaII | CCGG | 5 cut(s) | 9, 153, 276, 376, 2366 |
| HphI | GGTGA | 7 cut(s) | 36, 110, 310, 1334, 1938, 2831, 3258 |
| Hpy166II | GTNNAC | 6 cut(s) | 1602, 2017, 2056, 2585, 2597, 2622 |
| Hpy8I | GTNNAC | 6 cut(s) | 1602, 2017, 2056, 2585, 2597, 2622 |
| HpyAV | CCTTC | 9 cut(s) | 221, 375, 1330, 1625, 2516, 2628, 2789, 3182, 3332 |
| HpyCH4III | ACNGT | 8 cut(s) | 579, 715, 1252, 1455, 1997, 2265, 2472, 2879 |
| HpyCH4IV | ACGT | 5 cut(s) | 64, 1398, 1561, 1872, 2730 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 11, 123, 1492, 1783, 2511, 2963 |
| HpySE526I | ACGT | 5 cut(s) | 64, 1398, 1561, 1872, 2730 |
| HspAI | GCGC | 3 cut(s) | 12, 424, 618 |
| Kpn2I | TCCGGA | 2 cut(s) | 375, 2365 |
| LguI | GCTCTTC | 1 cut(s) | 414 |
| LmnI | GCTCC | 2 cut(s) | 1101, 1719 |
| Lsp1109I | GCAGC | 2 cut(s) | 466, 2264 |
| LweI | GCATC | 8 cut(s) | 391, 454, 649, 1482, 1585, 2419, 2628, 2652 |
| MaeI | CTAG | 5 cut(s) | 1319, 1643, 1835, 2339, 3027 |
| MaeII | ACGT | 5 cut(s) | 64, 1398, 1561, 1872, 2730 |
| MaeIII | GTNAC | 6 cut(s) | 850, 1390, 2240, 2466, 2819, 3264 |
| MfeI | CAATTG | 2 cut(s) | 222, 2433 |
| MflI | RGATCY | 4 cut(s) | 237, 1434, 2302, 2335 |
| MhlI | GDGCHC | 4 cut(s) | 1098, 1896, 2624, 3219 |
| MlsI | TGGCCA | 2 cut(s) | 495, 2883 |
| MluNI | TGGCCA | 2 cut(s) | 495, 2883 |
| MlyI | GAGTC | 5 cut(s) | 971, 1449, 2320, 2464, 3383 |
| MmeI | TCCRAC | 4 cut(s) | 47, 583, 658, 1741 |
| Mox20I | TGGCCA | 2 cut(s) | 495, 2883 |
| Mph1103I | ATGCAT | 2 cut(s) | 1114, 1497 |
| MroI | TCCGGA | 2 cut(s) | 375, 2365 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1026 |
| MscI | TGGCCA | 2 cut(s) | 495, 2883 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1173, 1397, 1581, 3293 |
| Msp20I | TGGCCA | 2 cut(s) | 495, 2883 |
| MspA1I | CMGCKG | 1 cut(s) | 181 |
| MspI | CCGG | 5 cut(s) | 9, 153, 276, 376, 2366 |
| MspR9I | CCNGG | 3 cut(s) | 1289, 2091, 2709 |
| MunI | CAATTG | 2 cut(s) | 222, 2433 |
| MvaI | CCWGG | 3 cut(s) | 1289, 2091, 2709 |
| MvnI | CGCG | 3 cut(s) | 506, 618, 620 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 11, 123, 1492, 1783, 2511, 2963 |
| NdeI | CATATG | 1 cut(s) | 3160 |
| NlaIV | GGNNCC | 3 cut(s) | 844, 1436, 1457 |
| NmuCI | GTSAC | 3 cut(s) | 1390, 2819, 3264 |
| NsiI | ATGCAT | 2 cut(s) | 1114, 1497 |
| NspI | RCATGY | 2 cut(s) | 1112, 2541 |
| OliI | CACNNNNGTG | 1 cut(s) | 1397 |
| PaeI | GCATGC | 1 cut(s) | 1112 |
| PaeR7I | CTCGAG | 2 cut(s) | 1895, 1973 |
| PciI | ACATGT | 1 cut(s) | 2537 |
| PciSI | GCTCTTC | 1 cut(s) | 414 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1026 |
| PfeI | GAWTC | 9 cut(s) | 156, 272, 1702, 1943, 2183, 2438, 2446, 2969, 3239 |
| PflFI | GACNNNGTC | 1 cut(s) | 3134 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 799 |
| PfoI | TCCNGGA | 1 cut(s) | 1287 |
| PkrI | GCNGC | 3 cut(s) | 481, 2279, 3128 |
| PleI | GAGTC | 5 cut(s) | 971, 1448, 2319, 2463, 3382 |
| PmaCI | CACGTG | 1 cut(s) | 1399 |
| PmlI | CACGTG | 1 cut(s) | 1399 |
| PpsI | GAGTC | 5 cut(s) | 971, 1448, 2319, 2463, 3382 |
| Ppu21I | YACGTR | 1 cut(s) | 1399 |
| PscI | ACATGT | 1 cut(s) | 2537 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2373 |
| PshBI | ATTAAT | 1 cut(s) | 3324 |
| PsiI | TTATAA | 6 cut(s) | 542, 632, 732, 923, 1007, 1463 |
| Psp124BI | GAGCTC | 1 cut(s) | 1098 |
| Psp1406I | AACGTT | 1 cut(s) | 2730 |
| Psp6I | CCWGG | 3 cut(s) | 1287, 2089, 2707 |
| PspCI | CACGTG | 1 cut(s) | 1399 |
| PspFI | CCCAGC | 1 cut(s) | 3088 |
| PspGI | CCWGG | 3 cut(s) | 1287, 2089, 2707 |
| PspN4I | GGNNCC | 3 cut(s) | 844, 1436, 1457 |
| PspPI | GGNCC | 5 cut(s) | 124, 843, 1127, 2368, 3191 |
| PstI | CTGCAG | 1 cut(s) | 874 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1705 |
| PsuI | RGATCY | 4 cut(s) | 237, 1434, 2302, 2335 |
| PsyI | GACNNNGTC | 1 cut(s) | 3134 |
| PvuII | CAGCTG | 1 cut(s) | 181 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1173, 1397, 1581, 3293 |
| SacI | GAGCTC | 1 cut(s) | 1098 |
| SapI | GCTCTTC | 1 cut(s) | 414 |
| SatI | GCNGC | 3 cut(s) | 480, 2278, 3127 |
| Sau96I | GGNCC | 5 cut(s) | 124, 843, 1127, 2368, 3191 |
| SchI | GAGTC | 5 cut(s) | 971, 1449, 2320, 2464, 3383 |
| ScrFI | CCNGG | 3 cut(s) | 1289, 2091, 2709 |
| SduI | GDGCHC | 4 cut(s) | 1098, 1896, 2624, 3219 |
| SfaNI | GCATC | 8 cut(s) | 391, 454, 649, 1482, 1585, 2419, 2628, 2652 |
| SfcI | CTRYAG | 4 cut(s) | 711, 870, 1677, 2235 |
| Sfr274I | CTCGAG | 2 cut(s) | 1895, 1973 |
| SinI | GGWCC | 4 cut(s) | 843, 1127, 2368, 3191 |
| SlaI | CTCGAG | 2 cut(s) | 1895, 1973 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1173, 1397, 1581, 3293 |
| SmlI | CTYRAG | 9 cut(s) | 85, 232, 287, 1091, 1145, 1895, 1973, 2078, 2904 |
| SmoI | CTYRAG | 9 cut(s) | 85, 232, 287, 1091, 1145, 1895, 1973, 2078, 2904 |
| SpeI | ACTAGT | 1 cut(s) | 3026 |
| SphI | GCATGC | 1 cut(s) | 1112 |
| SsiI | CCGC | 6 cut(s) | 506, 620, 1852, 2835, 3038, 3126 |
| SspI | AATATT | 1 cut(s) | 646 |
| SspMI | CTAG | 5 cut(s) | 1319, 1643, 1835, 2339, 3027 |
| SstI | GAGCTC | 1 cut(s) | 1098 |
| StyD4I | CCNGG | 3 cut(s) | 1287, 2089, 2707 |
| StyI | CCWWGG | 3 cut(s) | 846, 1552, 2977 |
| TaaI | ACNGT | 8 cut(s) | 579, 715, 1252, 1455, 1997, 2265, 2472, 2879 |
| TaiI | ACGT | 5 cut(s) | 67, 1401, 1564, 1875, 2733 |
| TaqI | TCGA | 5 cut(s) | 1507, 1896, 1974, 3138, 3209 |
| TaqII | GACCGA | 3 cut(s) | 1792, 1910, 3208 |
| TatI | WGTACW | 4 cut(s) | 1220, 1247, 2558, 2862 |
| TauI | GCSGC | 1 cut(s) | 3129 |
| TfiI | GAWTC | 9 cut(s) | 156, 272, 1702, 1943, 2183, 2438, 2446, 2969, 3239 |
| TscAI | CASTG | 6 cut(s) | 249, 330, 478, 1194, 2629, 2634 |
| TseFI | GTSAC | 3 cut(s) | 1390, 2819, 3264 |
| TseI | GCWGC | 2 cut(s) | 479, 2277 |
| Tsp45I | GTSAC | 3 cut(s) | 1390, 2819, 3264 |
| TspGWI | ACGGA | 2 cut(s) | 27, 274 |
| TspRI | CASTG | 6 cut(s) | 249, 330, 478, 1194, 2629, 2634 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3134 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 799 |
| VneI | GTGCAC | 1 cut(s) | 2620 |
| VpaK11BI | GGWCC | 4 cut(s) | 843, 1127, 2368, 3191 |
| VspI | ATTAAT | 1 cut(s) | 3324 |
| XapI | RAATTY | 7 cut(s) | 681, 1817, 1900, 2479, 2644, 2844, 3064 |
| XbaI | TCTAGA | 1 cut(s) | 1642 |
| XceI | RCATGY | 2 cut(s) | 1112, 2541 |
| XhoI | CTCGAG | 2 cut(s) | 1895, 1973 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1026 |
| XspI | CTAG | 5 cut(s) | 1319, 1643, 1835, 2339, 3027 |
| Zsp2I | ATGCAT | 2 cut(s) | 1114, 1497 |