Rroxscaffold_3G00250760

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
44535806 .. 44541002
5197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00250760.1

Sequence Viewer

Length: 2055 bp
ATGGAGTGTAGAACAACACTGGGGCAACTAGTCTTTCCAGTATTCTACGATGTTGATCCTTCAGATCTCCGGAAACAGAGTGGTAGTTTTGCAGAGGCATTTGATCAGAAACATGGAGACAAAGATGAAGATAAGGTCAAGAGGTGGAGAGCTGCTCTTACTGAAGCTACAAATTTGTCTGGCTGGGATCTTCGAACTAAAGCTGATGGGCATGAAGGGAACTTTATCAGGATGGTTATTAAGGAGATCACTAAATATCTCAATAACACAGACTTAAATGTAGCAGACAATGAAGTTGGAATAGACTCTCGTATGCAAGATATTATTTCTCATTTAGGTGTTGGAACATCACATGACGTTCGCATTGTTGGAATTTGTGGTATGGGGGGTATCGGAAAAACAACAGTTGCAAAGGCTCTTTACAACAAATTTCGTCAAGACTTTGAAGCTTCAAGTTTCCTTGCCAATGTCAGGGAAACTATGCAAAACAATGGTATGGTGAGTTTGCAAGAAAGCCTTCTTTCTGATATCTCTAAAACAAGCATGACAGAGGTAGGTCATGTTGACAGAGGGATCAATGTGATAAGAAATAGACTCGGATGCAGAAGGGTATTTGTCGTAATTGATGATGTCGACCAAGTGGAGCAATTAAAGGCTTTAGCAATAGACCGTGACTCATTTGGCCTGGGAAGCAGAGTGCTTATAACAACAAGAGATGAACATTTGCTAAAGCAACTTGGAGTGGATTCTATATATCAAGCTCGTGTGATGAATAAAGAAGAAGCTCTCAAACTCTTTACTTTGCATGCCTTTAAAACTCGTTGTCCTCCTAACGAAGAATATCTTAATCTCTCAAGAAGGGTTGTTGATTGTTGTGGAGGTTTGCCACTAGCTCTTAAAGTTCTCGGTTCTTTTCTAGTTAAAAGAAGCACAAAATTTTGGGAAAGTGAAATCAAGAAATTGCAAACAATTCCTCCACTCGAAGTTCAAGAAAAGCTCAAAATAAGTTTTGATGGGCTAAATGATGATACAGAGAGAGACATATTCCTTGATATATCATGTTTCCATATCGGGAAGGAGATGGACCATGTCAAACAAGTATTGGATAGTTGTGGTCTTTTTCCAGATTCAGGAATTGAGGTCCTCGTTCAGCGTTGCCTCGTGACTGTTAATAAGGAAAACAAGCTGATGATGCATGATTTGCTTCGCGACATGGGTAGAGCAATTGTCCGTGCAAAATGCTGTGACAACCCTGGAAAATGGAGTAGAGTGTGGCGCCGGGAAGATGCAATAGAGGTATTGAGGGACGAATCTGGATCTGATGAAATTCAAGGACTCACTCTAGGCATGTGGAGCTTAAAATTAGAGAAAAAGGCTGAATTTAGGACAAAAGCATTTGCAAAAATGAAGAGACTGAGATTTCTCGAACTCAGACATGTAAGGCTCACTGGAGGCTACAAATATCTCCCCAACAAGTTAAGATGGCTCCACTGGACTGGATTCCCTCTAGAGTTCATACCAAAAGACTTTAGTCTAGGAGAAGTAGTTGCTCTCTACCTACCATGTAGCAACCTCAGATACGTTTGCGGAGATTCTGGGGTCCTTGCGAAATTGAAGATTCTTGATCTCAGTGATTCCTATTACTTAAAACAATCACCAGACTTTTCAACGATTCCCAATCTCGAGGAGTTGGTCCTGTATAATTGTTCGCAATTGGCAGAGGTTCACCAGTCCATTGGAGGACTCAAAAGGCTTTCTTTGGTTAATCTTACGGACTGCAAAATTCTTGAGGAGCTTCCAAGTACTTTCTATAAGTTAAACTCTATAGTAACTCTTGTTCTTGATGGCTGTAAAAGATTTGAGAAATTGGATGAGGAAATAGGGGACATGACATCATTGTCTACTCTGCATGCAGATCGCACAGCCATAACAGAACTGCCGTCTTCCATTGGAAGTCTATCTTCCTTGAAAAGTTTACATATAGAACGCAGTAATTTGGCCGTCTTCCATTGGAAGTCTATCTTCCTTGAAAAGTTTACATATAGAACGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

684

Amino Acids

77.67

Weight (kDa)

7.22

Isoelectric Point (pI)

41.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 1 - 93 2.6e-15 TIR domain
NB-ARC PF00931 104 - 273 1.7e-21 NB-ARC domain
WHD_ROQ1 PF23282 344 - 412 1e-20 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 619 - 663 1.2e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36930 AT5G36930 AT5G36930 AT5G36930
fragaria_vesca FvH4_3g45361 FvH4_3g45380 FvH4_5g21061 FvH4_5g21062 FvH4_5g21063 FvH4_5g32050 FvH4_5g32970 FvH4_5g32990 FvH4_5g34190 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34211 FvH4_5g34240 FvH4_5g34250
malus_domestica MD00G1011700.v1.1 MD00G1026100.v1.1 MD00G1026500.v1.1 MD00G1027000.v1.1 MD00G1027100.v1.1 MD00G1027700.v1.1 MD00G1027800.v1.1 MD00G1028000.v1.1 MD00G1220000.v1.1 MD02G1024400.v1.1 MD02G1024800.v1.1 MD02G1026000.v1.1 MD02G1026100.v1.1 MD02G1031800.v1.1 MD02G1038500.v1.1 MD02G1038700.v1.1 MD02G1039200.v1.1 MD02G1040600.v1.1 MD02G1040900.v1.1 MD02G1041200.v1.1 MD02G1041300.v1.1 MD02G1041700.v1.1 MD02G1042000.v1.1 MD02G1043800.v1.1 MD02G1043900.v1.1 MD02G1044300.v1.1 MD02G1045200.v1.1 MD02G1045300.v1.1 MD02G1051200.v1.1 MD02G1052200.v1.1 MD02G1052800.v1.1 MD02G1053100.v1.1 MD02G1053600.v1.1 MD02G1055500.v1.1 MD02G1063300.v1.1 MD02G1063400.v1.1 MD02G1063800.v1.1 MD02G1306500.v1.1 MD02G1306600.v1.1 MD02G1306700.v1.1 MD02G1306900.v1.1 MD02G1307200.v1.1 MD04G1011700.v1.1 MD05G1315400.v1.1 MD05G1316000.v1.1 MD05G1316700.v1.1 MD05G1317000.v1.1 MD05G1317300.v1.1 MD05G1317600.v1.1 MD05G1317700.v1.1 MD07G1102800.v1.1 MD07G1238200.v1.1 MD08G1175900.v1.1 MD08G1203600.v1.1 MD09G1024200.v1.1 MD09G1039600.v1.1 MD09G1044800.v1.1 MD09G1045100.v1.1 MD10G1038700.v1.1 MD10G1039000.v1.1 MD10G1039200.v1.1 MD10G1040000.v1.1 MD10G1040200.v1.1 MD10G1040600.v1.1 MD10G1040800.v1.1 MD10G1297300.v1.1 MD12G1247500.v1.1 MD12G1247900.v1.1 MD12G1248300.v1.1 MD12G1248800.v1.1 MD15G1103700.v1.1 MD15G1103800.v1.1 MD15G1104000.v1.1 MD15G1179600.v1.1 MD15G1182500.v1.1 MD16G1068200.v1.1 MD16G1068300.v1.1 MD17G1024600.v1.1 MD17G1024700.v1.1 MD17G1025000.v1.1 MD17G1025900.v1.1
prunus_persica Prupe.1G539800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G557100_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557300_v2.0.a1
pyrus_communis pycom02g02080 pycom02g02090 pycom02g02110 pycom02g03220 pycom02g03260 pycom02g03370 pycom02g03390 pycom02g03410 pycom02g03420 pycom02g03450 pycom02g03500 pycom02g03730 pycom02g03770 pycom02g04400 pycom02g04410 pycom02g04430 pycom02g04450 pycom02g04460 pycom02g04490 pycom02g05200 pycom02g25710 pycom02g25750 pycom02g25790 pycom02g25810 pycom02g25830 pycom04g00920 pycom04g00930 pycom04g00940 pycom05g29300 pycom05g29310 pycom05g29380 pycom05g29410 pycom07g06310 pycom07g21420 pycom08g15070 pycom08g17540 pycom08g17560 pycom08g17570 pycom10g02670 pycom10g02680 pycom10g02700 pycom10g02770 pycom10g02790 pycom10g02800 pycom10g02810 pycom10g25020 pycom10g25030 pycom10g25050 pycom10g25080 pycom111g01990 pycom111g02000 pycom111g02030 pycom111g02040 pycom111g02050 pycom111g02060 pycom12g22710 pycom12g22720 pycom12g22730 pycom12g22740 pycom12g22750 pycom12g22770 pycom12g22780 pycom12g22790 pycom12g22800 pycom12g22810 pycom12g22830 pycom12g22840 pycom12g22860 pycom15g09440 pycom15g09480 pycom15g16120 pycom15g32380 pycom16g05970 pycom17g02100
rosa_chinensis RchiOBHm_Chr2g0144661 RchiOBHm_Chr4g0407491 RchiOBHm_Chr4g0407501 RchiOBHm_Chr4g0412381 RchiOBHm_Chr7g0208191 RchiOBHm_Chr7g0208201 RchiOBHm_Chr7g0208211 RchiOBHm_Chr7g0208221 RchiOBHm_Chr7g0228071 RchiOBHm_Chr7g0228121 RchiOBHm_Chr7g0230971 RchiOBHm_Chr7g0230981 RchiOBHm_Chr7g0233901 RchiOBHm_Chr7g0233951 RchiOBHm_Chr7g0233961 RchiOBHm_Chr7g0233991 RchiOBHm_Chr7g0234021 RchiOBHm_Chr7g0234151 RchiOBHm_Chr7g0234161 RchiOBHm_Chr7g0234241 RchiOBHm_Chr7g0234501 RchiOBHm_Chr7g0234641 RchiOBHm_Chr7g0234771 RchiOBHm_Chr7g0234781 RchiOBHm_Chr7g0234991 RchiOBHm_Chr7g0241291 RchiOBHm_Chr7g0241301
rosa_laevigata RLG00000001186 RLG00000001187 RLG00000001212 RLG00000001226 RLG00000001233 RLG00000001590 RLG00000003242 RLG00000003243 RLG00000003249 RLG00000008688 RLG00000008690
rosa_multiflora Rmu_co7966574.1_g000001 Rmu_co8120830.1_g000001 Rmu_co8142226.1_g000001 Rmu_co8293083.1_g000001 Rmu_co8351227.1_g000001 Rmu_co8380159.1_g000001 Rmu_co8456505.1_g000001 Rmu_sc0000676.1_g000025 Rmu_sc0000706.1_g000018 Rmu_sc0000706.1_g000040 Rmu_sc0000740.1_g000029 Rmu_sc0000740.1_g000032 Rmu_sc0000740.1_g000037 Rmu_sc0000740.1_g000040 Rmu_sc0000762.1_g000003 Rmu_sc0000762.1_g000019 Rmu_sc0000762.1_g000034 Rmu_sc0000762.1_g000069 Rmu_sc0000892.1_g000001 Rmu_sc0000945.1_g000040 Rmu_sc0001913.1_g000037 Rmu_sc0001913.1_g000041 Rmu_sc0001913.1_g000049 Rmu_sc0002775.1_g000017 Rmu_sc0002775.1_g000018 Rmu_sc0002775.1_g000020 Rmu_sc0002775.1_g000021 Rmu_sc0002775.1_g000022 Rmu_sc0002775.1_g000025 Rmu_sc0002775.1_g000026 Rmu_sc0002775.1_g000028 Rmu_sc0002775.1_g000030 Rmu_sc0004858.1_g000002 Rmu_sc0004864.1_g000022 Rmu_sc0005038.1_g000023 Rmu_sc0005840.1_g000014 Rmu_sc0006724.1_g000003 Rmu_sc0006824.1_g000005 Rmu_sc0007869.1_g000003 Rmu_sc0007869.1_g000005 Rmu_sc0007869.1_g000008 Rmu_sc0008646.1_g000007 Rmu_sc0009637.1_g000009 Rmu_sc0010500.1_g000002 Rmu_sc0010500.1_g000012 Rmu_sc0012403.1_g000025 Rmu_sc0013768.1_g000025 Rmu_sc0015625.1_g000001 Rmu_sc0019715.1_g000001 Rmu_sc0021133.1_g000002 Rmu_sc0021904.1_g000001 Rmu_sc0021904.1_g000003 Rmu_sc0021904.1_g000004 Rmu_sc0022054.1_g000001 Rmu_sc0026025.1_g000001 Rmu_sc0036828.1_g000002 Rmu_sc0041808.1_g000001 Rmu_ssc0000012.1_g000001
rosa_roxburghii Rroxscaffold_3G00226370 Rroxscaffold_3G00226860 Rroxscaffold_3G00226900 Rroxscaffold_3G00226930 Rroxscaffold_3G00226940 Rroxscaffold_3G00226970 Rroxscaffold_3G00226980 Rroxscaffold_3G00231530 Rroxscaffold_3G00237090 Rroxscaffold_3G00250760 Rroxscaffold_3G00250800
rosa_rugosa Rorug04G0082300 Rorug07G0101800 Rorug07G0102000 Rorug07G0102100 Rorug07G0221200 Rorug07G0245700 Rorug07G0245700 Rorug07G0245700 Rorug07G0263900 Rorug07G0264000 Rorug07G0264000 Rorug07G0264500 Rorug07G0282900 Rorug07G0282900 Rorug07G0283100 Rorug07G0283200.1 Rorug07G0283300 Rorug07G0283900 Rorug07G0284000 Rorug07G0284100 Rorug07G0284300 Rorug07G0284400 Rorug07G0284500 Rorug07G0285000 Rorug07G0285200 Rorug07G0285300 Rorug07G0285500 Rorug07G0286800 Rorug07G0286900 Rorug07G0287100 Rorug07G0287200
rosa_samantha Rh7AG236100 Rh7AG236200 Rh7AG236300 Rh7AG440000 Rh7AG440100 Rh7BG411900 Rh7BG412000 Rh7BG412600 Rh7CG251300 Rh7CG417700 Rh7CG460100 Rh7DG242100 Rh7DG242200 Rh7DG242300 Rh7DG429300
rosa_wichuraiana Rw0G005070 Rw0G010780 Rw0G012530 Rw7G020110 Rw7G020160 Rw7G020170 Rw7G033210 Rw7G033230 Rw7G033250 Rw7G034540 Rw7G035150 Rw7G036190 Rw7G036210 Rw7G036260 Rw7G036270 Rw7G036290 Rw7G036300 Rw7G036310 Rw7G036350 Rw7G036360 Rw7G036440 Rw7G036510 Rw7G036530 Rw7G036570 Rw7G036590 Rw7G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 704
AasI GACNNNNNNGTC 1 cut(s) 1897
AccB1I GGYRCC 1 cut(s) 1275
AccI GTMKAC 2 cut(s) 633, 1901
AccII CGCG 1 cut(s) 1209
AccIII TCCGGA 1 cut(s) 69
AciI CCGC 1 cut(s) 1587
AclWI GGATC 4 cut(s) 50, 195, 581, 1324
AcoI YGGCCR 1 cut(s) 1998
AcsI RAATTY 7 cut(s) 172, 372, 428, 935, 1326, 1379, 1782
AcuI CTGAAG 2 cut(s) 45, 183
AcyI GRCGYC 1 cut(s) 1276
AfaI GTAC 1 cut(s) 1804
AfiI CCNNNNNNNGG 2 cut(s) 471, 1130
AflIII ACRYGT 1 cut(s) 1435
AgsI TTSAA 8 cut(s) 446, 453, 989, 1331, 1615, 1668, 1969, 2030
AhlI ACTAGT 1 cut(s) 28
AjnI CCWGG 2 cut(s) 684, 1252
Alw26I GTCTC 3 cut(s) 111, 1032, 1405
AlwI GGATC 4 cut(s) 50, 195, 581, 1324
Ama87I CYCGRG 1 cut(s) 1682
Aor13HI TCCGGA 1 cut(s) 69
AoxI GGCC 2 cut(s) 682, 1998
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 7 cut(s) 172, 372, 428, 935, 1326, 1379, 1782
Asp700I GAANNNNTTC 1 cut(s) 516
AspLEI GCGC 1 cut(s) 1278
AspS9I GGNCC 4 cut(s) 1084, 1141, 1600, 1693
AsuC2I CCSGG 1 cut(s) 1280
AsuHPI GGTGA 3 cut(s) 511, 1647, 1718
AsuII TTCGAA 1 cut(s) 193
AvaI CYCGRG 1 cut(s) 1682
AvaII GGWCC 4 cut(s) 1084, 1141, 1600, 1693
BanI GGYRCC 1 cut(s) 1275
BauI CACGAG 2 cut(s) 762, 1160
BbsI GAAGAC 2 cut(s) 1935, 1996
BbvI GCAGC 1 cut(s) 139
BccI CCATC 6 cut(s) 200, 226, 1007, 1075, 1476, 1838
BceAI ACGGC 2 cut(s) 1924, 1985
BcgI CGANNNNNNTGC 2 cut(s) 1898, 1932
BciT130I CCWGG 2 cut(s) 686, 1254
BclI TGATCA 1 cut(s) 103
BcnI CCSGG 1 cut(s) 1280
BcoDI GTCTC 3 cut(s) 111, 1032, 1405
BcuI ACTAGT 1 cut(s) 28
BfaI CTAG 6 cut(s) 29, 890, 917, 1343, 1508, 1535
BfmI CTRYAG 1 cut(s) 1824
BfoI RGCGCY 1 cut(s) 1279
BglII AGATCT 1 cut(s) 64
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
BmcAI AGTACT 1 cut(s) 1804
Bme1390I CCNGG 3 cut(s) 686, 1254, 1280
Bme18I GGWCC 4 cut(s) 1084, 1141, 1600, 1693
BmeT110I CYCGRG 1 cut(s) 1682
BmgT120I GGNCC 4 cut(s) 1084, 1141, 1600, 1693
BmiI GGNNCC 3 cut(s) 1277, 1487, 1601
BmrFI CCNGG 3 cut(s) 686, 1254, 1280
BmrI ACTGGG 1 cut(s) 29
BmsI GCATC 3 cut(s) 590, 1182, 1276
BmuI ACTGGG 1 cut(s) 29
BoxI GACNNNNGTC 1 cut(s) 1530
BpiI GAAGAC 2 cut(s) 1935, 1996
BplI GAGNNNNNCTC 2 cut(s) 139, 171
BpmI CTGGAG 1 cut(s) 1470
Bpu14I TTCGAA 1 cut(s) 193
BpuEI CTTGAG 2 cut(s) 838, 1808
BpuMI CCSGG 1 cut(s) 1280
BsaBI GATNNNNATC 1 cut(s) 54
BsaHI GRCGYC 1 cut(s) 1276
BsaJI CCNNGG 2 cut(s) 685, 1252
BsaWI WCCGGW 1 cut(s) 69
BsaXI ACNNNNNCTCC 4 cut(s) 958, 988, 1530, 1560
Bsc4I CCNNNNNNNGG 2 cut(s) 471, 1130
Bse1I ACTGG 6 cut(s) 24, 38, 1453, 1496, 1501, 1729
Bse8I GATNNNNATC 1 cut(s) 54
BseAI TCCGGA 1 cut(s) 69
BseBI CCWGG 2 cut(s) 686, 1254
BseDI CCNNGG 2 cut(s) 685, 1252
BseGI GGATG 3 cut(s) 237, 605, 1876
BseJI GATNNNNATC 1 cut(s) 54
BseLI CCNNNNNNNGG 2 cut(s) 471, 1130
BseMII CTCAG 4 cut(s) 1406, 1444, 1588, 1642
BseNI ACTGG 6 cut(s) 24, 38, 1453, 1496, 1501, 1729
BseRI GAGGAG 2 cut(s) 1700, 1805
BseXI GCAGC 1 cut(s) 139
BseYI CCCAGC 1 cut(s) 183
Bsh1236I CGCG 1 cut(s) 1209
BshFI GGCC 2 cut(s) 684, 2000
BshNI GGYRCC 1 cut(s) 1275
BsiHKCI CYCGRG 1 cut(s) 1682
BsiSI CCGG 2 cut(s) 70, 1279
BslFI GGGAC 2 cut(s) 1319, 1898
BslI CCNNNNNNNGG 2 cut(s) 471, 1130
BsmAI GTCTC 3 cut(s) 111, 1032, 1405
BsmFI GGGAC 2 cut(s) 1319, 1898
BsnI GGCC 2 cut(s) 684, 2000
BsoBI CYCGRG 1 cut(s) 1682
Bsp119I TTCGAA 1 cut(s) 193
Bsp13I TCCGGA 1 cut(s) 69
Bsp143I GATC 9 cut(s) 55, 64, 103, 187, 246, 573, 1316, 1624, 1915
Bsp68I TCGCGA 1 cut(s) 1209
BspACI CCGC 1 cut(s) 1587
BspANI GGCC 2 cut(s) 684, 2000
BspCNI CTCAG 4 cut(s) 1407, 1443, 1587, 1641
BspEI TCCGGA 1 cut(s) 69
BspFNI CGCG 1 cut(s) 1209
BspLI GGNNCC 3 cut(s) 1277, 1487, 1601
BspPI GGATC 4 cut(s) 50, 195, 581, 1324
BspT104I TTCGAA 1 cut(s) 193
BspT107I GGYRCC 1 cut(s) 1275
BsrI ACTGG 6 cut(s) 24, 38, 1453, 1496, 1501, 1729
BssECI CCNNGG 2 cut(s) 685, 1252
BssMI GATC 9 cut(s) 55, 64, 103, 187, 246, 573, 1316, 1624, 1915
BssNI GRCGYC 1 cut(s) 1276
BssSI CACGAG 2 cut(s) 762, 1160
Bst2BI CACGAG 2 cut(s) 762, 1160
Bst2UI CCWGG 2 cut(s) 686, 1254
Bst4CI ACNGT 3 cut(s) 406, 671, 1168
Bst6I CTCTTC 1 cut(s) 1403
BstACI GRCGYC 1 cut(s) 1276
BstAPI GCANNNNNTGC 1 cut(s) 1201
BstBI TTCGAA 1 cut(s) 193
BstC8I GCNNGC 2 cut(s) 807, 1911
BstDEI CTNAG 4 cut(s) 1415, 1430, 1574, 1628
BstF5I GGATG 3 cut(s) 237, 605, 1876
BstFNI CGCG 1 cut(s) 1209
BstH2I RGCGCY 1 cut(s) 1279
BstHHI GCGC 1 cut(s) 1278
BstKTI GATC 9 cut(s) 58, 67, 106, 190, 249, 576, 1319, 1627, 1918
BstMAI GTCTC 3 cut(s) 111, 1032, 1405
BstMBI GATC 9 cut(s) 55, 64, 103, 187, 246, 573, 1316, 1624, 1915
BstMWI GCNNNNNNNGC 4 cut(s) 690, 1192, 1201, 1353
BstNI CCWGG 2 cut(s) 686, 1254
BstNSI RCATGY 4 cut(s) 809, 1351, 1439, 1913
BstPAI GACNNNNGTC 1 cut(s) 1530
BstSCI CCNGG 3 cut(s) 684, 1252, 1278
BstSFI CTRYAG 1 cut(s) 1824
BstUI CGCG 1 cut(s) 1209
BstV1I GCAGC 1 cut(s) 139
BstV2I GAAGAC 2 cut(s) 1935, 1996
BstX2I RGATCY 3 cut(s) 64, 187, 1316
BstXI CCANNNNNNTGG 2 cut(s) 1496, 1736
BstYI RGATCY 3 cut(s) 64, 187, 1316
BsuRI GGCC 2 cut(s) 684, 2000
BtsCI GGATG 3 cut(s) 237, 605, 1876
BtsIMutI CAGTG 4 cut(s) 17, 1446, 1489, 1636
BtuMI TCGCGA 1 cut(s) 1209
Cac8I GCNNGC 2 cut(s) 807, 1911
CfoI GCGC 1 cut(s) 1278
Cfr13I GGNCC 4 cut(s) 1084, 1141, 1600, 1693
Csp6I GTAC 1 cut(s) 1803
CviQI GTAC 1 cut(s) 1803
DdeI CTNAG 4 cut(s) 1415, 1430, 1574, 1628
DinI GGCGCC 1 cut(s) 1277
DpnI GATC 9 cut(s) 57, 66, 105, 189, 248, 575, 1318, 1626, 1917
DpnII GATC 9 cut(s) 55, 64, 103, 187, 246, 573, 1316, 1624, 1915
DraI TTTAAA 1 cut(s) 814
DrdI GACNNNNNNGTC 1 cut(s) 1897
DseDI GACNNNNNNGTC 1 cut(s) 1897
EaeI YGGCCR 1 cut(s) 1998
Eam1104I CTCTTC 1 cut(s) 1403
EarI CTCTTC 1 cut(s) 1403
Eco32I GATATC 1 cut(s) 529
Eco47I GGWCC 4 cut(s) 1084, 1141, 1600, 1693
Eco57I CTGAAG 2 cut(s) 45, 183
Eco88I CYCGRG 1 cut(s) 1682
EcoO109I RGGNCCY 2 cut(s) 1141, 1600
EcoRII CCWGG 2 cut(s) 684, 1252
EcoRV GATATC 1 cut(s) 529
EcoT22I ATGCAT 1 cut(s) 1197
EgeI GGCGCC 1 cut(s) 1277
EheI GGCGCC 1 cut(s) 1277
FaqI GGGAC 2 cut(s) 1319, 1898
FbaI TGATCA 1 cut(s) 103
FblI GTMKAC 2 cut(s) 633, 1901
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 3 cut(s) 244, 612, 1883
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 6 cut(s) 29, 890, 917, 1343, 1508, 1535
GlaI GCGC 1 cut(s) 1277
GluI GCNGC 1 cut(s) 153
GsaI CCCAGC 1 cut(s) 187
GsuI CTGGAG 1 cut(s) 1470
HaeII RGCGCY 1 cut(s) 1279
HaeIII GGCC 2 cut(s) 684, 2000
HapII CCGG 2 cut(s) 70, 1279
HhaI GCGC 1 cut(s) 1278
Hin1I GRCGYC 1 cut(s) 1276
Hin6I GCGC 1 cut(s) 1276
HinP1I GCGC 1 cut(s) 1276
HincII GTYRAC 2 cut(s) 565, 634
HindII GTYRAC 2 cut(s) 565, 634
HindIII AAGCTT 1 cut(s) 447
HpaII CCGG 2 cut(s) 70, 1279
HphI GGTGA 3 cut(s) 511, 1647, 1718
Hpy166II GTNNAC 6 cut(s) 565, 634, 1726, 1902, 1976, 2037
Hpy188I TCNGA 8 cut(s) 64, 108, 395, 526, 599, 1321, 1433, 1577
Hpy8I GTNNAC 6 cut(s) 565, 634, 1726, 1902, 1976, 2037
HpyAV CCTTC 6 cut(s) 69, 209, 527, 600, 852, 1069
HpyCH4III ACNGT 3 cut(s) 406, 671, 1168
HpyCH4IV ACGT 2 cut(s) 357, 1581
HpyF10VI GCNNNNNNNGC 4 cut(s) 690, 1192, 1201, 1353
HpyF3I CTNAG 4 cut(s) 1415, 1430, 1574, 1628
HpySE526I ACGT 2 cut(s) 357, 1581
Hsp92I GRCGYC 1 cut(s) 1276
HspAI GCGC 1 cut(s) 1276
KasI GGCGCC 1 cut(s) 1275
Kpn2I TCCGGA 1 cut(s) 69
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 9 cut(s) 55, 64, 103, 187, 246, 573, 1316, 1624, 1915
LmnI GCTCC 4 cut(s) 643, 1353, 1491, 1792
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 3 cut(s) 590, 1182, 1276
MaeI CTAG 6 cut(s) 29, 890, 917, 1343, 1508, 1535
MaeII ACGT 2 cut(s) 357, 1581
MaeIII GTNAC 4 cut(s) 671, 1162, 1244, 1828
MalI GATC 9 cut(s) 57, 66, 105, 189, 248, 575, 1318, 1626, 1917
MboI GATC 9 cut(s) 55, 64, 103, 187, 246, 573, 1316, 1624, 1915
MfeI CAATTG 2 cut(s) 1224, 1712
MflI RGATCY 3 cut(s) 64, 187, 1316
Mly113I GGCGCC 1 cut(s) 1276
MlyI GAGTC 5 cut(s) 299, 588, 668, 1329, 1737
MmeI TCCRAC 3 cut(s) 277, 322, 349
Mph1103I ATGCAT 1 cut(s) 1197
MroI TCCGGA 1 cut(s) 69
MroXI GAANNNNTTC 1 cut(s) 516
MslI CAYNNNNRTG 1 cut(s) 336
MspI CCGG 2 cut(s) 70, 1279
MspR9I CCNGG 3 cut(s) 686, 1254, 1280
MunI CAATTG 2 cut(s) 1224, 1712
MvaI CCWGG 2 cut(s) 686, 1254
MvnI CGCG 1 cut(s) 1209
MwoI GCNNNNNNNGC 4 cut(s) 690, 1192, 1201, 1353
NarI GGCGCC 1 cut(s) 1276
NciI CCSGG 1 cut(s) 1280
NdeII GATC 9 cut(s) 55, 64, 103, 187, 246, 573, 1316, 1624, 1915
NlaIV GGNNCC 3 cut(s) 1277, 1487, 1601
NmuCI GTSAC 3 cut(s) 671, 1162, 1244
NruI TCGCGA 1 cut(s) 1209
NsiI ATGCAT 1 cut(s) 1197
NspI RCATGY 4 cut(s) 809, 1351, 1439, 1913
NspV TTCGAA 1 cut(s) 193
PaeI GCATGC 2 cut(s) 809, 1913
PaeR7I CTCGAG 1 cut(s) 1682
PciI ACATGT 1 cut(s) 1435
PdmI GAANNNNTTC 1 cut(s) 516
PfeI GAWTC 8 cut(s) 746, 1127, 1310, 1500, 1592, 1618, 1634, 1672
PflFI GACNNNGTC 1 cut(s) 1088
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 5 cut(s) 299, 588, 668, 1329, 1737
PluTI GGCGCC 1 cut(s) 1279
PpsI GAGTC 5 cut(s) 299, 588, 668, 1329, 1737
PpuMI RGGWCCY 2 cut(s) 1141, 1600
PscI ACATGT 1 cut(s) 1435
PshAI GACNNNNGTC 1 cut(s) 1530
PsiI TTATAA 1 cut(s) 704
Psp5II RGGWCCY 2 cut(s) 1141, 1600
Psp6I CCWGG 2 cut(s) 684, 1252
PspFI CCCAGC 1 cut(s) 183
PspGI CCWGG 2 cut(s) 684, 1252
PspN4I GGNNCC 3 cut(s) 1277, 1487, 1601
PspPI GGNCC 4 cut(s) 1084, 1141, 1600, 1693
PspPPI RGGWCCY 2 cut(s) 1141, 1600
PsrI GAACNNNNNNTAC 2 cut(s) 1821, 1853
PsuI RGATCY 3 cut(s) 64, 187, 1316
PsyI GACNNNGTC 1 cut(s) 1088
RruI TCGCGA 1 cut(s) 1209
RsaI GTAC 1 cut(s) 1804
RsaNI GTAC 1 cut(s) 1803
RseI CAYNNNNRTG 1 cut(s) 336
SalI GTCGAC 1 cut(s) 632
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 9 cut(s) 55, 64, 103, 187, 246, 573, 1316, 1624, 1915
Sau96I GGNCC 4 cut(s) 1084, 1141, 1600, 1693
ScaI AGTACT 1 cut(s) 1804
SchI GAGTC 5 cut(s) 299, 588, 668, 1329, 1737
ScrFI CCNGG 3 cut(s) 686, 1254, 1280
SfaNI GCATC 3 cut(s) 590, 1182, 1276
SfcI CTRYAG 1 cut(s) 1824
SfoI GGCGCC 1 cut(s) 1277
Sfr274I CTCGAG 1 cut(s) 1682
SfuI TTCGAA 1 cut(s) 193
SinI GGWCC 4 cut(s) 1084, 1141, 1600, 1693
SlaI CTCGAG 1 cut(s) 1682
SmiMI CAYNNNNRTG 1 cut(s) 336
SmlI CTYRAG 3 cut(s) 853, 1682, 1787
SmoI CTYRAG 3 cut(s) 853, 1682, 1787
SpeI ACTAGT 1 cut(s) 28
SphI GCATGC 2 cut(s) 809, 1913
SsiI CCGC 1 cut(s) 1587
SspDI GGCGCC 1 cut(s) 1275
SspMI CTAG 6 cut(s) 29, 890, 917, 1343, 1508, 1535
StyD4I CCNGG 3 cut(s) 684, 1252, 1278
TaaI ACNGT 3 cut(s) 406, 671, 1168
TaiI ACGT 2 cut(s) 360, 1584
TaqI TCGA 5 cut(s) 193, 633, 981, 1425, 1683
TatI WGTACW 1 cut(s) 1802
TfiI GAWTC 8 cut(s) 746, 1127, 1310, 1500, 1592, 1618, 1634, 1672
TscAI CASTG 4 cut(s) 24, 1453, 1496, 1636
TseFI GTSAC 3 cut(s) 671, 1162, 1244
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 3 cut(s) 671, 1162, 1244
TspDTI ATGAA 8 cut(s) 141, 228, 306, 732, 785, 1338, 1421, 1504
TspGWI ACGGA 2 cut(s) 1220, 1787
TspRI CASTG 4 cut(s) 24, 1453, 1496, 1636
Tth111I GACNNNGTC 1 cut(s) 1088
VpaK11BI GGWCC 4 cut(s) 1084, 1141, 1600, 1693
XapI RAATTY 7 cut(s) 172, 372, 428, 935, 1326, 1379, 1782
XbaI TCTAGA 1 cut(s) 1507
XceI RCATGY 4 cut(s) 809, 1351, 1439, 1913
XhoI CTCGAG 1 cut(s) 1682
XmiI GTMKAC 2 cut(s) 633, 1901
XmnI GAANNNNTTC 1 cut(s) 516
XspI CTAG 6 cut(s) 29, 890, 917, 1343, 1508, 1535
ZrmI AGTACT 1 cut(s) 1804
Zsp2I ATGCAT 1 cut(s) 1197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.