TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 1 - 88 | 1.7e-15 | TIR domain |
| NB-ARC | PF00931 | 103 - 266 | 8.8e-18 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 336 - 402 | 1.5e-17 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 527 - 627 | 2.8e-07 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 666 - 722 | 2e-07 | Leucine rich repeat |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 414 |
| AccB1I | GGYRCC | 1 cut(s) | 1128 |
| AccI | GTMKAC | 2 cut(s) | 609, 2065 |
| AccII | CGCG | 1 cut(s) | 2324 |
| AccIII | TCCGGA | 1 cut(s) | 2695 |
| AciI | CCGC | 4 cut(s) | 174, 860, 1525, 2021 |
| AclI | AACGTT | 1 cut(s) | 2640 |
| AclWI | GGATC | 3 cut(s) | 50, 186, 889 |
| AcoI | YGGCCR | 1 cut(s) | 1890 |
| AcuI | CTGAAG | 1 cut(s) | 1275 |
| AfaI | GTAC | 9 cut(s) | 588, 1351, 1404, 1529, 1905, 1940, 2479, 2626, 2781 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1916 |
| AflII | CTTAAG | 1 cut(s) | 2384 |
| AflIII | ACRYGT | 1 cut(s) | 697 |
| AgeI | ACCGGT | 1 cut(s) | 1125 |
| AhlI | ACTAGT | 2 cut(s) | 1340, 2627 |
| AjnI | CCWGG | 4 cut(s) | 949, 1225, 2308, 2541 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 908, 940 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2690, 2722 |
| Alw21I | GWGCWC | 1 cut(s) | 771 |
| Alw26I | GTCTC | 3 cut(s) | 1331, 1369, 1922 |
| AlwI | GGATC | 3 cut(s) | 50, 186, 889 |
| Ama87I | CYCGRG | 4 cut(s) | 300, 661, 1765, 2332 |
| Aor13HI | TCCGGA | 1 cut(s) | 2695 |
| AoxI | GGCC | 6 cut(s) | 658, 1890, 2128, 2335, 2570, 2862 |
| ApeKI | GCWGC | 4 cut(s) | 542, 622, 1533, 1972 |
| AseI | ATTAAT | 2 cut(s) | 1274, 2610 |
| AsiGI | ACCGGT | 1 cut(s) | 1125 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 295 |
| AspLEI | GCGC | 3 cut(s) | 823, 1360, 2324 |
| AspS9I | GGNCC | 7 cut(s) | 549, 659, 748, 1114, 2128, 2335, 2731 |
| AsuC2I | CCSGG | 4 cut(s) | 662, 663, 1766, 1767 |
| AsuHPI | GGTGA | 3 cut(s) | 367, 1741, 2776 |
| AsuII | TTCGAA | 2 cut(s) | 161, 894 |
| AvaI | CYCGRG | 4 cut(s) | 300, 661, 1765, 2332 |
| AvaII | GGWCC | 4 cut(s) | 549, 748, 1114, 2731 |
| AxyI | CCTNAGG | 2 cut(s) | 2123, 2502 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2461, 2494 |
| BanI | GGYRCC | 1 cut(s) | 1128 |
| BanII | GRGCYC | 1 cut(s) | 771 |
| BauI | CACGAG | 2 cut(s) | 1694, 2574 |
| BbsI | GAAGAC | 1 cut(s) | 2446 |
| Bbv12I | GWGCWC | 1 cut(s) | 771 |
| BbvI | GCAGC | 4 cut(s) | 529, 634, 1545, 1984 |
| BccI | CCATC | 7 cut(s) | 1073, 1440, 1709, 1805, 1877, 1922, 2400 |
| BceAI | ACGGC | 2 cut(s) | 1421, 1905 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1180, 1214, 2213, 2247 |
| BciT130I | CCWGG | 4 cut(s) | 951, 1227, 2310, 2543 |
| BcnI | CCSGG | 4 cut(s) | 662, 663, 1766, 1767 |
| BcoDI | GTCTC | 3 cut(s) | 1331, 1369, 1922 |
| BcuI | ACTAGT | 2 cut(s) | 1340, 2627 |
| BfaI | CTAG | 7 cut(s) | 243, 476, 639, 807, 885, 1341, 2628 |
| BfmI | CTRYAG | 4 cut(s) | 543, 1878, 2399, 2433 |
| BfoI | RGCGCY | 1 cut(s) | 1361 |
| BfrI | CTTAAG | 1 cut(s) | 2384 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2127 |
| BglII | AGATCT | 2 cut(s) | 1708, 2146 |
| BisI | GCNGC | 5 cut(s) | 543, 623, 860, 1534, 1973 |
| BlsI | GCNGC | 5 cut(s) | 544, 624, 861, 1535, 1974 |
| BmcAI | AGTACT | 1 cut(s) | 1351 |
| Bme1390I | CCNGG | 8 cut(s) | 662, 663, 951, 1227, 1766, 1767, 2310, 2543 |
| Bme18I | GGWCC | 4 cut(s) | 549, 748, 1114, 2731 |
| BmeT110I | CYCGRG | 4 cut(s) | 300, 661, 1765, 2332 |
| BmgT120I | GGNCC | 7 cut(s) | 549, 659, 748, 1114, 2128, 2335, 2731 |
| BmiI | GGNNCC | 5 cut(s) | 550, 750, 1130, 2111, 2129 |
| BmrFI | CCNGG | 8 cut(s) | 662, 663, 951, 1227, 1766, 1767, 2310, 2543 |
| BmrI | ACTGGG | 1 cut(s) | 278 |
| BmsI | GCATC | 3 cut(s) | 381, 748, 1155 |
| BmuI | ACTGGG | 1 cut(s) | 278 |
| BpiI | GAAGAC | 1 cut(s) | 2446 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 130, 162 |
| BpmI | CTGGAG | 2 cut(s) | 972, 1946 |
| Bpu14I | TTCGAA | 2 cut(s) | 161, 894 |
| BpuEI | CTTGAG | 4 cut(s) | 785, 1670, 1697, 1775 |
| BpuMI | CCSGG | 4 cut(s) | 662, 663, 1766, 1767 |
| Bsa29I | ATCGAT | 1 cut(s) | 418 |
| BsaAI | YACGTR | 1 cut(s) | 1402 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2277 |
| BsaJI | CCNNGG | 6 cut(s) | 661, 662, 1225, 1765, 1766, 2971 |
| BsaWI | WCCGGW | 2 cut(s) | 1125, 2695 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1916 |
| Bse118I | RCCGGY | 1 cut(s) | 1125 |
| Bse1I | ACTGG | 3 cut(s) | 85, 284, 1929 |
| Bse21I | CCTNAGG | 2 cut(s) | 2123, 2502 |
| Bse3DI | GCAATG | 1 cut(s) | 2427 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2277 |
| BseAI | TCCGGA | 1 cut(s) | 2695 |
| BseBI | CCWGG | 4 cut(s) | 951, 1227, 2310, 2543 |
| BseCI | ATCGAT | 1 cut(s) | 418 |
| BseDI | CCNNGG | 6 cut(s) | 661, 662, 1225, 1765, 1766, 2971 |
| BseGI | GGATG | 4 cut(s) | 228, 1084, 2411, 2656 |
| BseJI | GATNNNNATC | 1 cut(s) | 2277 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1916 |
| BseMI | GCAATG | 1 cut(s) | 2427 |
| BseMII | CTCAG | 9 cut(s) | 222, 1344, 1370, 1609, 2137, 2296, 2353, 2694, 2751 |
| BseNI | ACTGG | 3 cut(s) | 85, 284, 1929 |
| BseXI | GCAGC | 4 cut(s) | 529, 634, 1545, 1984 |
| BseYI | CCCAGC | 1 cut(s) | 2677 |
| Bsh1236I | CGCG | 1 cut(s) | 2324 |
| BshFI | GGCC | 6 cut(s) | 660, 1892, 2130, 2337, 2572, 2864 |
| BshNI | GGYRCC | 1 cut(s) | 1128 |
| BshTI | ACCGGT | 1 cut(s) | 1125 |
| BshVI | ATCGAT | 1 cut(s) | 418 |
| BsiHKAI | GWGCWC | 1 cut(s) | 771 |
| BsiHKCI | CYCGRG | 4 cut(s) | 300, 661, 1765, 2332 |
| BsiSI | CCGG | 4 cut(s) | 662, 1126, 1766, 2696 |
| BsiWI | CGTACG | 1 cut(s) | 1402 |
| BslFI | GGGAC | 3 cut(s) | 562, 1196, 1900 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1916 |
| BsmAI | GTCTC | 3 cut(s) | 1331, 1369, 1922 |
| BsmBI | CGTCTC | 1 cut(s) | 1922 |
| BsmFI | GGGAC | 3 cut(s) | 562, 1196, 1900 |
| BsmI | GAATGC | 1 cut(s) | 2250 |
| BsnI | GGCC | 6 cut(s) | 660, 1892, 2130, 2337, 2572, 2864 |
| BsoBI | CYCGRG | 4 cut(s) | 300, 661, 1765, 2332 |
| Bsp119I | TTCGAA | 2 cut(s) | 161, 894 |
| Bsp1286I | GDGCHC | 1 cut(s) | 771 |
| Bsp13I | TCCGGA | 1 cut(s) | 2695 |
| Bsp143I | GATC | 7 cut(s) | 55, 178, 881, 1609, 1708, 2146, 2181 |
| BspACI | CCGC | 4 cut(s) | 174, 860, 1525, 2021 |
| BspANI | GGCC | 6 cut(s) | 660, 1892, 2130, 2337, 2572, 2864 |
| BspCNI | CTCAG | 9 cut(s) | 223, 1345, 1371, 1608, 2136, 2295, 2352, 2695, 2752 |
| BspDI | ATCGAT | 1 cut(s) | 418 |
| BspEI | TCCGGA | 1 cut(s) | 2695 |
| BspFNI | CGCG | 1 cut(s) | 2324 |
| BspLI | GGNNCC | 5 cut(s) | 550, 750, 1130, 2111, 2129 |
| BspMAI | CTGCAG | 2 cut(s) | 547, 1882 |
| BspPI | GGATC | 3 cut(s) | 50, 186, 889 |
| BspT104I | TTCGAA | 2 cut(s) | 161, 894 |
| BspT107I | GGYRCC | 1 cut(s) | 1128 |
| BspTI | CTTAAG | 1 cut(s) | 2384 |
| BsrDI | GCAATG | 1 cut(s) | 2427 |
| BsrFI | RCCGGY | 1 cut(s) | 1125 |
| BsrI | ACTGG | 3 cut(s) | 85, 284, 1929 |
| BssAI | RCCGGY | 1 cut(s) | 1125 |
| BssECI | CCNNGG | 6 cut(s) | 661, 662, 1225, 1765, 1766, 2971 |
| BssMI | GATC | 7 cut(s) | 55, 178, 881, 1609, 1708, 2146, 2181 |
| BssSI | CACGAG | 2 cut(s) | 1694, 2574 |
| Bst2BI | CACGAG | 2 cut(s) | 1694, 2574 |
| Bst2UI | CCWGG | 4 cut(s) | 951, 1227, 2310, 2543 |
| Bst4CI | ACNGT | 5 cut(s) | 848, 969, 1494, 1673, 1745 |
| Bst6I | CTCTTC | 3 cut(s) | 1329, 1367, 2940 |
| BstAFI | CTTAAG | 1 cut(s) | 2384 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1174 |
| BstBAI | YACGTR | 1 cut(s) | 1402 |
| BstBI | TTCGAA | 2 cut(s) | 161, 894 |
| BstC8I | GCNNGC | 8 cut(s) | 399, 783, 825, 864, 1206, 1457, 1835, 2396 |
| BstDSI | CCRYGG | 1 cut(s) | 2971 |
| BstF5I | GGATG | 4 cut(s) | 228, 1084, 2411, 2656 |
| BstFNI | CGCG | 1 cut(s) | 2324 |
| BstH2I | RGCGCY | 1 cut(s) | 1361 |
| BstHHI | GCGC | 3 cut(s) | 823, 1360, 2324 |
| BstKTI | GATC | 7 cut(s) | 58, 181, 884, 1612, 1711, 2149, 2184 |
| BstMAI | GTCTC | 3 cut(s) | 1331, 1369, 1922 |
| BstMBI | GATC | 7 cut(s) | 55, 178, 881, 1609, 1708, 2146, 2181 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 666, 1174, 1456, 1834, 2118, 2127, 2319, 2807, 2931 |
| BstNI | CCWGG | 4 cut(s) | 951, 1227, 2310, 2543 |
| BstNSI | RCATGY | 6 cut(s) | 68, 701, 785, 1208, 1525, 2266 |
| BstSCI | CCNGG | 8 cut(s) | 660, 661, 949, 1225, 1764, 1765, 2308, 2541 |
| BstSFI | CTRYAG | 4 cut(s) | 543, 1878, 2399, 2433 |
| BstSNI | TACGTA | 1 cut(s) | 1402 |
| BstUI | CGCG | 1 cut(s) | 2324 |
| BstV1I | GCAGC | 4 cut(s) | 529, 634, 1545, 1984 |
| BstV2I | GAAGAC | 1 cut(s) | 2446 |
| BstX2I | RGATCY | 4 cut(s) | 178, 881, 1708, 2146 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 656 |
| BstYI | RGATCY | 4 cut(s) | 178, 881, 1708, 2146 |
| Bsu15I | ATCGAT | 1 cut(s) | 418 |
| Bsu36I | CCTNAGG | 2 cut(s) | 2123, 2502 |
| BsuRI | GGCC | 6 cut(s) | 660, 1892, 2130, 2337, 2572, 2864 |
| BsuTUI | ATCGAT | 1 cut(s) | 418 |
| BtgI | CCRYGG | 1 cut(s) | 2971 |
| BtsCI | GGATG | 4 cut(s) | 228, 1084, 2411, 2656 |
| BtsI | GCAGTG | 1 cut(s) | 541 |
| BtsIMutI | CAGTG | 1 cut(s) | 541 |
| Cac8I | GCNNGC | 8 cut(s) | 399, 783, 825, 864, 1206, 1457, 1835, 2396 |
| CfoI | GCGC | 3 cut(s) | 823, 1360, 2324 |
| Cfr10I | RCCGGY | 1 cut(s) | 1125 |
| Cfr13I | GGNCC | 7 cut(s) | 549, 659, 748, 1114, 2128, 2335, 2731 |
| Cfr9I | CCCGGG | 2 cut(s) | 661, 1765 |
| ClaI | ATCGAT | 1 cut(s) | 418 |
| CseI | GACGC | 2 cut(s) | 585, 1939 |
| Csp6I | GTAC | 9 cut(s) | 587, 1350, 1403, 1528, 1904, 1939, 2478, 2625, 2780 |
| CspAI | ACCGGT | 1 cut(s) | 1125 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 829, 864 |
| CviQI | GTAC | 9 cut(s) | 587, 1350, 1403, 1528, 1904, 1939, 2478, 2625, 2780 |
| DpnI | GATC | 7 cut(s) | 57, 180, 883, 1611, 1710, 2148, 2183 |
| DpnII | GATC | 7 cut(s) | 55, 178, 881, 1609, 1708, 2146, 2181 |
| EaeI | YGGCCR | 1 cut(s) | 1890 |
| Eam1104I | CTCTTC | 3 cut(s) | 1329, 1367, 2940 |
| EarI | CTCTTC | 3 cut(s) | 1329, 1367, 2940 |
| EciI | GGCGGA | 1 cut(s) | 2036 |
| Ecl136II | GAGCTC | 1 cut(s) | 769 |
| Eco105I | TACGTA | 1 cut(s) | 1402 |
| Eco147I | AGGCCT | 2 cut(s) | 2572, 2864 |
| Eco24I | GRGCYC | 1 cut(s) | 771 |
| Eco32I | GATATC | 2 cut(s) | 313, 1198 |
| Eco47I | GGWCC | 4 cut(s) | 549, 748, 1114, 2731 |
| Eco53kI | GAGCTC | 1 cut(s) | 769 |
| Eco57I | CTGAAG | 1 cut(s) | 1275 |
| Eco81I | CCTNAGG | 2 cut(s) | 2123, 2502 |
| Eco88I | CYCGRG | 4 cut(s) | 300, 661, 1765, 2332 |
| EcoICRI | GAGCTC | 1 cut(s) | 769 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1114, 2128 |
| EcoRII | CCWGG | 4 cut(s) | 949, 1225, 2308, 2541 |
| EcoRV | GATATC | 2 cut(s) | 313, 1198 |
| EcoT22I | ATGCAT | 3 cut(s) | 332, 1170, 2219 |
| EcoT38I | GRGCYC | 1 cut(s) | 771 |
| Esp3I | CGTCTC | 1 cut(s) | 1922 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 747, 779 |
| FaqI | GGGAC | 3 cut(s) | 562, 1196, 1900 |
| FauI | CCCGC | 1 cut(s) | 167 |
| FblI | GTMKAC | 2 cut(s) | 609, 2065 |
| Fnu4HI | GCNGC | 5 cut(s) | 543, 623, 860, 1534, 1973 |
| FokI | GGATG | 4 cut(s) | 235, 1091, 2418, 2663 |
| FriOI | GRGCYC | 1 cut(s) | 771 |
| Fsp4HI | GCNGC | 5 cut(s) | 543, 623, 860, 1534, 1973 |
| FspBI | CTAG | 7 cut(s) | 243, 476, 639, 807, 885, 1341, 2628 |
| GlaI | GCGC | 3 cut(s) | 822, 1359, 2323 |
| GluI | GCNGC | 5 cut(s) | 543, 623, 860, 1534, 1973 |
| GsaI | CCCAGC | 1 cut(s) | 2681 |
| GsuI | CTGGAG | 2 cut(s) | 972, 1946 |
| HaeII | RGCGCY | 1 cut(s) | 1361 |
| HaeIII | GGCC | 6 cut(s) | 660, 1892, 2130, 2337, 2572, 2864 |
| HapII | CCGG | 4 cut(s) | 662, 1126, 1766, 2696 |
| HgaI | GACGC | 2 cut(s) | 585, 1939 |
| HhaI | GCGC | 3 cut(s) | 823, 1360, 2324 |
| Hin6I | GCGC | 3 cut(s) | 821, 1358, 2322 |
| HinP1I | GCGC | 3 cut(s) | 821, 1358, 2322 |
| HincII | GTYRAC | 5 cut(s) | 841, 1499, 2355, 2470, 2638 |
| HindII | GTYRAC | 5 cut(s) | 841, 1499, 2355, 2470, 2638 |
| HindIII | AAGCTT | 3 cut(s) | 156, 1831, 2138 |
| HpaI | GTTAAC | 1 cut(s) | 2638 |
| HpaII | CCGG | 4 cut(s) | 662, 1126, 1766, 2696 |
| HphI | GGTGA | 3 cut(s) | 367, 1741, 2776 |
| Hpy188I | TCNGA | 9 cut(s) | 290, 343, 427, 791, 1046, 1706, 1919, 2109, 2342 |
| Hpy99I | CGWCG | 2 cut(s) | 579, 989 |
| HpyAV | CCTTC | 8 cut(s) | 69, 118, 890, 1298, 1920, 1989, 2123, 2714 |
| HpyCH4III | ACNGT | 5 cut(s) | 848, 969, 1494, 1673, 1745 |
| HpyCH4IV | ACGT | 6 cut(s) | 51, 270, 1401, 2640, 2782, 2939 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 666, 1174, 1456, 1834, 2118, 2127, 2319, 2807, 2931 |
| HpySE526I | ACGT | 6 cut(s) | 51, 270, 1401, 2640, 2782, 2939 |
| HspAI | GCGC | 3 cut(s) | 821, 1358, 2322 |
| Kpn2I | TCCGGA | 1 cut(s) | 2695 |
| KspAI | GTTAAC | 1 cut(s) | 2638 |
| Kzo9I | GATC | 7 cut(s) | 55, 178, 881, 1609, 1708, 2146, 2181 |
| LmnI | GCTCC | 3 cut(s) | 666, 774, 2109 |
| Lsp1109I | GCAGC | 4 cut(s) | 529, 634, 1545, 1984 |
| LweI | GCATC | 3 cut(s) | 381, 748, 1155 |
| MaeI | CTAG | 7 cut(s) | 243, 476, 639, 807, 885, 1341, 2628 |
| MaeII | ACGT | 6 cut(s) | 51, 270, 1401, 2640, 2782, 2939 |
| MaeIII | GTNAC | 3 cut(s) | 238, 2093, 2830 |
| MalI | GATC | 7 cut(s) | 57, 180, 883, 1611, 1710, 2148, 2183 |
| MboI | GATC | 7 cut(s) | 55, 178, 881, 1609, 1708, 2146, 2181 |
| MfeI | CAATTG | 1 cut(s) | 923 |
| MflI | RGATCY | 4 cut(s) | 178, 881, 1708, 2146 |
| MhlI | GDGCHC | 1 cut(s) | 771 |
| MlyI | GAGTC | 4 cut(s) | 1336, 1706, 1726, 2957 |
| MmeI | TCCRAC | 3 cut(s) | 268, 2628, 2922 |
| Mph1103I | ATGCAT | 3 cut(s) | 332, 1170, 2219 |
| MroI | TCCGGA | 1 cut(s) | 2695 |
| MroXI | GAANNNNTTC | 1 cut(s) | 295 |
| MslI | CAYNNNNRTG | 2 cut(s) | 114, 2364 |
| MspA1I | CMGCKG | 1 cut(s) | 862 |
| MspCI | CTTAAG | 1 cut(s) | 2384 |
| MspI | CCGG | 4 cut(s) | 662, 1126, 1766, 2696 |
| MspR9I | CCNGG | 8 cut(s) | 662, 663, 951, 1227, 1766, 1767, 2310, 2543 |
| MunI | CAATTG | 1 cut(s) | 923 |
| Mva1269I | GAATGC | 1 cut(s) | 2250 |
| MvaI | CCWGG | 4 cut(s) | 951, 1227, 2310, 2543 |
| MvnI | CGCG | 1 cut(s) | 2324 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 666, 1174, 1456, 1834, 2118, 2127, 2319, 2807, 2931 |
| NciI | CCSGG | 4 cut(s) | 662, 663, 1766, 1767 |
| NdeII | GATC | 7 cut(s) | 55, 178, 881, 1609, 1708, 2146, 2181 |
| NlaIV | GGNNCC | 5 cut(s) | 550, 750, 1130, 2111, 2129 |
| NmeAIII | GCCGAG | 1 cut(s) | 1350 |
| NmuCI | GTSAC | 1 cut(s) | 238 |
| NsiI | ATGCAT | 3 cut(s) | 332, 1170, 2219 |
| NspI | RCATGY | 6 cut(s) | 68, 701, 785, 1208, 1525, 2266 |
| NspV | TTCGAA | 2 cut(s) | 161, 894 |
| PaeI | GCATGC | 2 cut(s) | 785, 1208 |
| PaeR7I | CTCGAG | 1 cut(s) | 300 |
| PceI | AGGCCT | 2 cut(s) | 2572, 2864 |
| PciI | ACATGT | 1 cut(s) | 697 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1407 |
| PctI | GAATGC | 1 cut(s) | 2250 |
| PdmI | GAANNNNTTC | 1 cut(s) | 295 |
| PfeI | GAWTC | 8 cut(s) | 338, 943, 1107, 1249, 1464, 1559, 1585, 2837 |
| Pfl23II | CGTACG | 1 cut(s) | 1402 |
| PfoI | TCCNGGA | 1 cut(s) | 949 |
| PinAI | ACCGGT | 1 cut(s) | 1125 |
| PkrI | GCNGC | 5 cut(s) | 544, 624, 861, 1535, 1974 |
| PleI | GAGTC | 4 cut(s) | 1335, 1705, 1725, 2956 |
| PpsI | GAGTC | 4 cut(s) | 1335, 1705, 1725, 2956 |
| Ppu21I | YACGTR | 1 cut(s) | 1402 |
| PpuMI | RGGWCCY | 1 cut(s) | 1114 |
| PscI | ACATGT | 1 cut(s) | 697 |
| PshBI | ATTAAT | 2 cut(s) | 1274, 2610 |
| PsiI | TTATAA | 1 cut(s) | 414 |
| Psp124BI | GAGCTC | 1 cut(s) | 771 |
| Psp1406I | AACGTT | 1 cut(s) | 2640 |
| Psp5II | RGGWCCY | 1 cut(s) | 1114 |
| Psp6I | CCWGG | 4 cut(s) | 949, 1225, 2308, 2541 |
| PspFI | CCCAGC | 1 cut(s) | 2677 |
| PspGI | CCWGG | 4 cut(s) | 949, 1225, 2308, 2541 |
| PspLI | CGTACG | 1 cut(s) | 1402 |
| PspN4I | GGNNCC | 5 cut(s) | 550, 750, 1130, 2111, 2129 |
| PspPI | GGNCC | 7 cut(s) | 549, 659, 748, 1114, 2128, 2335, 2731 |
| PspPPI | RGGWCCY | 1 cut(s) | 1114 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 245, 277 |
| PstI | CTGCAG | 2 cut(s) | 547, 1882 |
| PsuI | RGATCY | 4 cut(s) | 178, 881, 1708, 2146 |
| RsaI | GTAC | 9 cut(s) | 588, 1351, 1404, 1529, 1905, 1940, 2479, 2626, 2781 |
| RsaNI | GTAC | 9 cut(s) | 587, 1350, 1403, 1528, 1904, 1939, 2478, 2625, 2780 |
| RseI | CAYNNNNRTG | 2 cut(s) | 114, 2364 |
| SacI | GAGCTC | 1 cut(s) | 771 |
| SatI | GCNGC | 5 cut(s) | 543, 623, 860, 1534, 1973 |
| Sau3AI | GATC | 7 cut(s) | 55, 178, 881, 1609, 1708, 2146, 2181 |
| Sau96I | GGNCC | 7 cut(s) | 549, 659, 748, 1114, 2128, 2335, 2731 |
| ScaI | AGTACT | 1 cut(s) | 1351 |
| SchI | GAGTC | 4 cut(s) | 1336, 1706, 1726, 2957 |
| ScrFI | CCNGG | 8 cut(s) | 662, 663, 951, 1227, 1766, 1767, 2310, 2543 |
| SduI | GDGCHC | 1 cut(s) | 771 |
| SfaNI | GCATC | 3 cut(s) | 381, 748, 1155 |
| SfcI | CTRYAG | 4 cut(s) | 543, 1878, 2399, 2433 |
| Sfr274I | CTCGAG | 1 cut(s) | 300 |
| SfuI | TTCGAA | 2 cut(s) | 161, 894 |
| SinI | GGWCC | 4 cut(s) | 549, 748, 1114, 2731 |
| SlaI | CTCGAG | 1 cut(s) | 300 |
| SmaI | CCCGGG | 2 cut(s) | 663, 1767 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 114, 2364 |
| SmlI | CTYRAG | 6 cut(s) | 300, 764, 1649, 1712, 1754, 2384 |
| SmoI | CTYRAG | 6 cut(s) | 300, 764, 1649, 1712, 1754, 2384 |
| SnaBI | TACGTA | 1 cut(s) | 1402 |
| SpeI | ACTAGT | 2 cut(s) | 1340, 2627 |
| SphI | GCATGC | 2 cut(s) | 785, 1208 |
| SseBI | AGGCCT | 2 cut(s) | 2572, 2864 |
| SsiI | CCGC | 4 cut(s) | 174, 860, 1525, 2021 |
| SspI | AATATT | 2 cut(s) | 323, 2899 |
| SspMI | CTAG | 7 cut(s) | 243, 476, 639, 807, 885, 1341, 2628 |
| SstI | GAGCTC | 1 cut(s) | 771 |
| StuI | AGGCCT | 2 cut(s) | 2572, 2864 |
| StyD4I | CCNGG | 8 cut(s) | 660, 661, 949, 1225, 1764, 1765, 2308, 2541 |
| TaaI | ACNGT | 5 cut(s) | 848, 969, 1494, 1673, 1745 |
| TaiI | ACGT | 6 cut(s) | 54, 273, 1404, 2643, 2785, 2942 |
| TatI | WGTACW | 2 cut(s) | 1349, 1938 |
| TauI | GCSGC | 1 cut(s) | 862 |
| TfiI | GAWTC | 8 cut(s) | 338, 943, 1107, 1249, 1464, 1559, 1585, 2837 |
| TscAI | CASTG | 1 cut(s) | 541 |
| TseFI | GTSAC | 1 cut(s) | 238 |
| TseI | GCWGC | 4 cut(s) | 542, 622, 1533, 1972 |
| Tsp45I | GTSAC | 1 cut(s) | 238 |
| TspDTI | ATGAA | 8 cut(s) | 132, 219, 1385, 1468, 2368, 2441, 2892, 2968 |
| TspGWI | ACGGA | 3 cut(s) | 1249, 2477, 2679 |
| TspMI | CCCGGG | 2 cut(s) | 661, 1765 |
| TspRI | CASTG | 1 cut(s) | 541 |
| Vha464I | CTTAAG | 1 cut(s) | 2384 |
| VpaK11BI | GGWCC | 4 cut(s) | 549, 748, 1114, 2731 |
| VspI | ATTAAT | 2 cut(s) | 1274, 2610 |
| XceI | RCATGY | 6 cut(s) | 68, 701, 785, 1208, 1525, 2266 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1921 |
| XhoI | CTCGAG | 1 cut(s) | 300 |
| XmaI | CCCGGG | 2 cut(s) | 661, 1765 |
| XmiI | GTMKAC | 2 cut(s) | 609, 2065 |
| XmnI | GAANNNNTTC | 1 cut(s) | 295 |
| XspI | CTAG | 7 cut(s) | 243, 476, 639, 807, 885, 1341, 2628 |
| ZrmI | AGTACT | 1 cut(s) | 1351 |
| Zsp2I | ATGCAT | 3 cut(s) | 332, 1170, 2219 |