TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 2 - 117 | 2.4e-22 | TIR domain |
| NB-ARC | PF00931 | 131 - 301 | 8.3e-24 | NB-ARC domain |
| NACHT | PF05729 | 153 - 293 | 7.6e-06 | NACHT domain |
| WHD_ROQ1 | PF23282 | 368 - 438 | 1e-15 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 812 - 928 | 2.2e-07 | Leucine-rich repeat region |
| LRR_4 | PF12799 | 854 - 895 | 1e-05 | Leucine Rich repeats (2 copies) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 507, 3101 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2841 |
| AccII | CGCG | 1 cut(s) | 558 |
| AciI | CCGC | 7 cut(s) | 8, 839, 1833, 2916, 3055, 3063, 3225 |
| AclWI | GGATC | 2 cut(s) | 95, 439 |
| AcoI | YGGCCR | 3 cut(s) | 259, 366, 1287 |
| AcsI | RAATTY | 5 cut(s) | 456, 513, 530, 1047, 3252 |
| AcuI | CTGAAG | 2 cut(s) | 159, 1074 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1357, 1796, 2336, 2728, 2841 |
| AflII | CTTAAG | 3 cut(s) | 2369, 2527, 3086 |
| AflIII | ACRYGT | 2 cut(s) | 73, 361 |
| AhlI | ACTAGT | 3 cut(s) | 1433, 1603, 2143 |
| AjnI | CCWGG | 7 cut(s) | 766, 1324, 1858, 2237, 2398, 2722, 2809 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 739, 771, 1013, 1045 |
| Alw21I | GWGCWC | 4 cut(s) | 876, 1503, 2864, 3213 |
| Alw26I | GTCTC | 5 cut(s) | 51, 633, 934, 1883, 2423 |
| Alw44I | GTGCAC | 1 cut(s) | 2860 |
| AlwI | GGATC | 2 cut(s) | 95, 439 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 245 |
| AoxI | GGCC | 4 cut(s) | 259, 366, 1287, 3129 |
| ApaLI | GTGCAC | 1 cut(s) | 2860 |
| ApoI | RAATTY | 5 cut(s) | 456, 513, 530, 1047, 3252 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 144, 1047 |
| AspS9I | GGNCC | 3 cut(s) | 764, 3407, 3431 |
| AsuHPI | GGTGA | 8 cut(s) | 49, 1313, 1354, 1707, 1778, 1834, 2318, 2374 |
| AvaII | GGWCC | 3 cut(s) | 764, 3407, 3431 |
| BaeGI | GKGCMC | 2 cut(s) | 2864, 2984 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 637, 670, 3129, 3162 |
| BalI | TGGCCA | 3 cut(s) | 261, 368, 1289 |
| BanII | GRGCYC | 3 cut(s) | 876, 1503, 3213 |
| BauI | CACGAG | 1 cut(s) | 1841 |
| Bbv12I | GWGCWC | 4 cut(s) | 876, 1503, 2864, 3213 |
| BccI | CCATC | 5 cut(s) | 273, 278, 460, 1175, 2898 |
| BceAI | ACGGC | 1 cut(s) | 1606 |
| BciT130I | CCWGG | 7 cut(s) | 768, 1326, 1860, 2239, 2400, 2724, 2811 |
| BclI | TGATCA | 1 cut(s) | 3016 |
| BcoDI | GTCTC | 5 cut(s) | 51, 633, 934, 1883, 2423 |
| BcuI | ACTAGT | 3 cut(s) | 1433, 1603, 2143 |
| BfaI | CTAG | 6 cut(s) | 968, 1434, 1604, 2144, 3308, 3348 |
| BfmI | CTRYAG | 1 cut(s) | 2897 |
| BfrI | CTTAAG | 3 cut(s) | 2369, 2527, 3086 |
| BlpI | GCTNAGC | 1 cut(s) | 1487 |
| Bme1390I | CCNGG | 7 cut(s) | 768, 1326, 1860, 2239, 2400, 2724, 2811 |
| Bme18I | GGWCC | 3 cut(s) | 764, 3407, 3431 |
| BmgT120I | GGNCC | 3 cut(s) | 764, 3407, 3431 |
| BmiI | GGNNCC | 5 cut(s) | 341, 1349, 1654, 2194, 2808 |
| BmrFI | CCNGG | 7 cut(s) | 768, 1326, 1860, 2239, 2400, 2724, 2811 |
| BmrI | ACTGGG | 1 cut(s) | 3373 |
| BmsI | GCATC | 5 cut(s) | 724, 2058, 2087, 2148, 3455 |
| BmuI | ACTGGG | 1 cut(s) | 3373 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3196 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 217, 249, 219, 251 |
| BpmI | CTGGAG | 1 cut(s) | 890 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1829 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1487 |
| BpuEI | CTTGAG | 1 cut(s) | 2970 |
| Bsa29I | ATCGAT | 1 cut(s) | 714 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3177 |
| BsaJI | CCNNGG | 6 cut(s) | 1324, 1859, 2399, 2722, 2835, 2938 |
| BsaWI | WCCGGW | 2 cut(s) | 720, 1717 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1357, 1796, 2336, 2728, 2841 |
| Bse1I | ACTGG | 5 cut(s) | 1396, 1638, 2262, 2778, 3368 |
| Bse3DI | GCAATG | 2 cut(s) | 227, 2928 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3177 |
| BseBI | CCWGG | 7 cut(s) | 768, 1326, 1860, 2239, 2400, 2724, 2811 |
| BseCI | ATCGAT | 1 cut(s) | 714 |
| BseDI | CCNNGG | 6 cut(s) | 1324, 1859, 2399, 2722, 2835, 2938 |
| BseJI | GATNNNNATC | 1 cut(s) | 3177 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1357, 1796, 2336, 2728, 2841 |
| BseMI | GCAATG | 2 cut(s) | 227, 2928 |
| BseMII | CTCAG | 7 cut(s) | 1463, 1501, 1702, 2075, 2242, 2629, 2793 |
| BseNI | ACTGG | 5 cut(s) | 1396, 1638, 2262, 2778, 3368 |
| BseSI | GKGCMC | 2 cut(s) | 2864, 2984 |
| BsgI | GTGCAG | 1 cut(s) | 73 |
| Bsh1236I | CGCG | 1 cut(s) | 558 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3012 |
| BshFI | GGCC | 4 cut(s) | 261, 368, 1289, 3131 |
| BshVI | ATCGAT | 1 cut(s) | 714 |
| BsiEI | CGRYCG | 1 cut(s) | 3012 |
| BsiHKAI | GWGCWC | 4 cut(s) | 876, 1503, 2864, 3213 |
| BsiSI | CCGG | 3 cut(s) | 721, 1718, 2741 |
| BsiWI | CGTACG | 1 cut(s) | 3116 |
| BslFI | GGGAC | 4 cut(s) | 1718, 2258, 3204, 3329 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1357, 1796, 2336, 2728, 2841 |
| BsmAI | GTCTC | 5 cut(s) | 51, 633, 934, 1883, 2423 |
| BsmFI | GGGAC | 4 cut(s) | 1718, 2258, 3204, 3329 |
| BsmI | GAATGC | 1 cut(s) | 396 |
| BsnI | GGCC | 4 cut(s) | 261, 368, 1289, 3131 |
| Bsp1286I | GDGCHC | 5 cut(s) | 876, 1503, 2864, 2984, 3213 |
| Bsp1407I | TGTACA | 1 cut(s) | 2669 |
| Bsp143I | GATC | 8 cut(s) | 42, 100, 415, 431, 1684, 2224, 3016, 3082 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1487 |
| Bsp19I | CCATGG | 2 cut(s) | 2835, 2938 |
| Bsp68I | TCGCGA | 1 cut(s) | 558 |
| BspACI | CCGC | 7 cut(s) | 8, 839, 1833, 2916, 3055, 3063, 3225 |
| BspANI | GGCC | 4 cut(s) | 261, 368, 1289, 3131 |
| BspCNI | CTCAG | 7 cut(s) | 1464, 1500, 1701, 2076, 2241, 2628, 2794 |
| BspDI | ATCGAT | 1 cut(s) | 714 |
| BspFNI | CGCG | 1 cut(s) | 558 |
| BspHI | TCATGA | 1 cut(s) | 783 |
| BspLI | GGNNCC | 5 cut(s) | 341, 1349, 1654, 2194, 2808 |
| BspPI | GGATC | 2 cut(s) | 95, 439 |
| BspTI | CTTAAG | 3 cut(s) | 2369, 2527, 3086 |
| BsrDI | GCAATG | 2 cut(s) | 227, 2928 |
| BsrGI | TGTACA | 1 cut(s) | 2669 |
| BsrI | ACTGG | 5 cut(s) | 1396, 1638, 2262, 2778, 3368 |
| BssECI | CCNNGG | 6 cut(s) | 1324, 1859, 2399, 2722, 2835, 2938 |
| BssMI | GATC | 8 cut(s) | 42, 100, 415, 431, 1684, 2224, 3016, 3082 |
| BssSI | CACGAG | 1 cut(s) | 1841 |
| BssT1I | CCWWGG | 2 cut(s) | 2835, 2938 |
| Bst2BI | CACGAG | 1 cut(s) | 1841 |
| Bst2UI | CCWGG | 7 cut(s) | 768, 1326, 1860, 2239, 2400, 2724, 2811 |
| Bst4CI | ACNGT | 3 cut(s) | 1243, 1352, 3198 |
| Bst6I | CTCTTC | 6 cut(s) | 1740, 1860, 1899, 2280, 2400, 2439 |
| BstAFI | CTTAAG | 3 cut(s) | 2369, 2527, 3086 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1273 |
| BstAUI | TGTACA | 1 cut(s) | 2669 |
| BstC8I | GCNNGC | 4 cut(s) | 888, 2709, 3129, 3388 |
| BstDSI | CCRYGG | 2 cut(s) | 2835, 2938 |
| BstEII | GGTNACC | 1 cut(s) | 1360 |
| BstFNI | CGCG | 1 cut(s) | 558 |
| BstKTI | GATC | 8 cut(s) | 45, 103, 418, 434, 1687, 2227, 3019, 3085 |
| BstMAI | GTCTC | 5 cut(s) | 51, 633, 934, 1883, 2423 |
| BstMBI | GATC | 8 cut(s) | 42, 100, 415, 431, 1684, 2224, 3016, 3082 |
| BstMCI | CGRYCG | 1 cut(s) | 3012 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1273, 3054, 3217 |
| BstNI | CCWGG | 7 cut(s) | 768, 1326, 1860, 2239, 2400, 2724, 2811 |
| BstNSI | RCATGY | 5 cut(s) | 77, 113, 365, 890, 1621 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3196 |
| BstPI | GGTNACC | 1 cut(s) | 1360 |
| BstSCI | CCNGG | 7 cut(s) | 766, 1324, 1858, 2237, 2398, 2722, 2809 |
| BstSFI | CTRYAG | 1 cut(s) | 2897 |
| BstSLI | GKGCMC | 2 cut(s) | 2864, 2984 |
| BstUI | CGCG | 1 cut(s) | 558 |
| Bsu15I | ATCGAT | 1 cut(s) | 714 |
| BsuRI | GGCC | 4 cut(s) | 261, 368, 1289, 3131 |
| BsuTUI | ATCGAT | 1 cut(s) | 714 |
| BtgI | CCRYGG | 2 cut(s) | 2835, 2938 |
| BtsI | GCAGTG | 1 cut(s) | 2168 |
| BtsIMutI | CAGTG | 5 cut(s) | 1219, 2168, 2255, 2623, 2799 |
| BtuMI | TCGCGA | 1 cut(s) | 558 |
| Cac8I | GCNNGC | 4 cut(s) | 888, 2709, 3129, 3388 |
| CaiI | CAGNNNCTG | 1 cut(s) | 245 |
| CciI | TCATGA | 1 cut(s) | 783 |
| Cfr13I | GGNCC | 3 cut(s) | 764, 3407, 3431 |
| ClaI | ATCGAT | 1 cut(s) | 714 |
| CseI | GACGC | 1 cut(s) | 3452 |
| DpnI | GATC | 8 cut(s) | 44, 102, 417, 433, 1686, 2226, 3018, 3084 |
| DpnII | GATC | 8 cut(s) | 42, 100, 415, 431, 1684, 2224, 3016, 3082 |
| DraI | TTTAAA | 5 cut(s) | 895, 1000, 1566, 2106, 3028 |
| EaeI | YGGCCR | 3 cut(s) | 259, 366, 1287 |
| Eam1104I | CTCTTC | 6 cut(s) | 1740, 1860, 1899, 2280, 2400, 2439 |
| EarI | CTCTTC | 6 cut(s) | 1740, 1860, 1899, 2280, 2400, 2439 |
| Ecl136II | GAGCTC | 3 cut(s) | 874, 1501, 3211 |
| Eco130I | CCWWGG | 2 cut(s) | 2835, 2938 |
| Eco24I | GRGCYC | 3 cut(s) | 876, 1503, 3213 |
| Eco32I | GATATC | 3 cut(s) | 712, 1953, 2493 |
| Eco47I | GGWCC | 3 cut(s) | 764, 3407, 3431 |
| Eco53kI | GAGCTC | 3 cut(s) | 874, 1501, 3211 |
| Eco57I | CTGAAG | 2 cut(s) | 159, 1074 |
| Eco91I | GGTNACC | 1 cut(s) | 1360 |
| EcoICRI | GAGCTC | 3 cut(s) | 874, 1501, 3211 |
| EcoO65I | GGTNACC | 1 cut(s) | 1360 |
| EcoRI | GAATTC | 2 cut(s) | 530, 1047 |
| EcoRII | CCWGG | 7 cut(s) | 766, 1324, 1858, 2237, 2398, 2722, 2809 |
| EcoRV | GATATC | 3 cut(s) | 712, 1953, 2493 |
| EcoT14I | CCWWGG | 2 cut(s) | 2835, 2938 |
| EcoT22I | ATGCAT | 1 cut(s) | 1269 |
| EcoT38I | GRGCYC | 3 cut(s) | 876, 1503, 3213 |
| ErhI | CCWWGG | 2 cut(s) | 2835, 2938 |
| FaqI | GGGAC | 4 cut(s) | 1718, 2258, 3204, 3329 |
| FauI | CCCGC | 1 cut(s) | 3218 |
| FauNDI | CATATG | 1 cut(s) | 522 |
| FbaI | TGATCA | 1 cut(s) | 3016 |
| FriOI | GRGCYC | 3 cut(s) | 876, 1503, 3213 |
| FspBI | CTAG | 6 cut(s) | 968, 1434, 1604, 2144, 3308, 3348 |
| GsuI | CTGGAG | 1 cut(s) | 890 |
| HaeIII | GGCC | 4 cut(s) | 261, 368, 1289, 3131 |
| HapII | CCGG | 3 cut(s) | 721, 1718, 2741 |
| HgaI | GACGC | 1 cut(s) | 3452 |
| HincII | GTYRAC | 3 cut(s) | 319, 646, 2974 |
| HindII | GTYRAC | 3 cut(s) | 319, 646, 2974 |
| HindIII | AAGCTT | 2 cut(s) | 1084, 2384 |
| HpaII | CCGG | 3 cut(s) | 721, 1718, 2741 |
| HphI | GGTGA | 8 cut(s) | 49, 1313, 1354, 1707, 1778, 1834, 2318, 2374 |
| Hpy166II | GTNNAC | 8 cut(s) | 319, 572, 646, 826, 1825, 2365, 2862, 2974 |
| Hpy8I | GTNNAC | 8 cut(s) | 319, 572, 646, 826, 1825, 2365, 2862, 2974 |
| Hpy99I | CGWCG | 1 cut(s) | 554 |
| HpyCH4III | ACNGT | 3 cut(s) | 1243, 1352, 3198 |
| HpyCH4IV | ACGT | 4 cut(s) | 96, 193, 552, 1494 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1273, 3054, 3217 |
| HpySE526I | ACGT | 4 cut(s) | 96, 193, 552, 1494 |
| Ksp22I | TGATCA | 1 cut(s) | 3016 |
| Kzo9I | GATC | 8 cut(s) | 42, 100, 415, 431, 1684, 2224, 3016, 3082 |
| LmnI | GCTCC | 4 cut(s) | 345, 871, 2166, 3383 |
| LweI | GCATC | 5 cut(s) | 724, 2058, 2087, 2148, 3455 |
| MaeI | CTAG | 6 cut(s) | 968, 1434, 1604, 2144, 3308, 3348 |
| MaeII | ACGT | 4 cut(s) | 96, 193, 552, 1494 |
| MaeIII | GTNAC | 5 cut(s) | 749, 1237, 1360, 1838, 1910 |
| MalI | GATC | 8 cut(s) | 44, 102, 417, 433, 1686, 2226, 3018, 3084 |
| MboI | GATC | 8 cut(s) | 42, 100, 415, 431, 1684, 2224, 3016, 3082 |
| MfeI | CAATTG | 3 cut(s) | 378, 728, 1028 |
| MhlI | GDGCHC | 5 cut(s) | 876, 1503, 2864, 2984, 3213 |
| MlsI | TGGCCA | 3 cut(s) | 261, 368, 1289 |
| MluNI | TGGCCA | 3 cut(s) | 261, 368, 1289 |
| MlyI | GAGTC | 2 cut(s) | 1885, 2425 |
| MmeI | TCCRAC | 2 cut(s) | 433, 1529 |
| Mox20I | TGGCCA | 3 cut(s) | 261, 368, 1289 |
| Mph1103I | ATGCAT | 1 cut(s) | 1269 |
| MroXI | GAANNNNTTC | 2 cut(s) | 144, 1047 |
| MscI | TGGCCA | 3 cut(s) | 261, 368, 1289 |
| MslI | CAYNNNNRTG | 2 cut(s) | 3396, 3420 |
| Msp20I | TGGCCA | 3 cut(s) | 261, 368, 1289 |
| MspA1I | CMGCKG | 1 cut(s) | 2876 |
| MspCI | CTTAAG | 3 cut(s) | 2369, 2527, 3086 |
| MspI | CCGG | 3 cut(s) | 721, 1718, 2741 |
| MspR9I | CCNGG | 7 cut(s) | 768, 1326, 1860, 2239, 2400, 2724, 2811 |
| MunI | CAATTG | 3 cut(s) | 378, 728, 1028 |
| Mva1269I | GAATGC | 1 cut(s) | 396 |
| MvaI | CCWGG | 7 cut(s) | 768, 1326, 1860, 2239, 2400, 2724, 2811 |
| MvnI | CGCG | 1 cut(s) | 558 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1273, 3054, 3217 |
| NcoI | CCATGG | 2 cut(s) | 2835, 2938 |
| NdeI | CATATG | 1 cut(s) | 522 |
| NdeII | GATC | 8 cut(s) | 42, 100, 415, 431, 1684, 2224, 3016, 3082 |
| NlaIV | GGNNCC | 5 cut(s) | 341, 1349, 1654, 2194, 2808 |
| NmuCI | GTSAC | 3 cut(s) | 749, 1360, 1838 |
| NruI | TCGCGA | 1 cut(s) | 558 |
| NsiI | ATGCAT | 1 cut(s) | 1269 |
| NspI | RCATGY | 5 cut(s) | 77, 113, 365, 890, 1621 |
| PaeI | GCATGC | 1 cut(s) | 890 |
| PagI | TCATGA | 1 cut(s) | 783 |
| PciI | ACATGT | 2 cut(s) | 73, 361 |
| PctI | GAATGC | 1 cut(s) | 396 |
| PdmI | GAANNNNTTC | 2 cut(s) | 144, 1047 |
| PfeI | GAWTC | 9 cut(s) | 11, 118, 384, 1209, 1783, 2023, 2323, 2563, 2786 |
| Pfl23II | CGTACG | 1 cut(s) | 3116 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2841 |
| PfoI | TCCNGGA | 1 cut(s) | 766 |
| PleI | GAGTC | 2 cut(s) | 1885, 2425 |
| PpsI | GAGTC | 2 cut(s) | 1885, 2425 |
| PscI | ACATGT | 2 cut(s) | 73, 361 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3196 |
| PsiI | TTATAA | 2 cut(s) | 507, 3101 |
| Psp124BI | GAGCTC | 3 cut(s) | 876, 1503, 3213 |
| Psp6I | CCWGG | 7 cut(s) | 766, 1324, 1858, 2237, 2398, 2722, 2809 |
| PspEI | GGTNACC | 1 cut(s) | 1360 |
| PspGI | CCWGG | 7 cut(s) | 766, 1324, 1858, 2237, 2398, 2722, 2809 |
| PspLI | CGTACG | 1 cut(s) | 3116 |
| PspN4I | GGNNCC | 5 cut(s) | 341, 1349, 1654, 2194, 2808 |
| PspPI | GGNCC | 3 cut(s) | 764, 3407, 3431 |
| PstNI | CAGNNNCTG | 1 cut(s) | 245 |
| PvuII | CAGCTG | 1 cut(s) | 2876 |
| RruI | TCGCGA | 1 cut(s) | 558 |
| RseI | CAYNNNNRTG | 2 cut(s) | 3396, 3420 |
| SacI | GAGCTC | 3 cut(s) | 876, 1503, 3213 |
| Sau3AI | GATC | 8 cut(s) | 42, 100, 415, 431, 1684, 2224, 3016, 3082 |
| Sau96I | GGNCC | 3 cut(s) | 764, 3407, 3431 |
| SchI | GAGTC | 2 cut(s) | 1885, 2425 |
| ScrFI | CCNGG | 7 cut(s) | 768, 1326, 1860, 2239, 2400, 2724, 2811 |
| SduI | GDGCHC | 5 cut(s) | 876, 1503, 2864, 2984, 3213 |
| SfaNI | GCATC | 5 cut(s) | 724, 2058, 2087, 2148, 3455 |
| SfcI | CTRYAG | 1 cut(s) | 2897 |
| SinI | GGWCC | 3 cut(s) | 764, 3407, 3431 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 3396, 3420 |
| SmlI | CTYRAG | 4 cut(s) | 2369, 2527, 2985, 3086 |
| SmoI | CTYRAG | 4 cut(s) | 2369, 2527, 2985, 3086 |
| SpeI | ACTAGT | 3 cut(s) | 1433, 1603, 2143 |
| SphI | GCATGC | 1 cut(s) | 890 |
| SsiI | CCGC | 7 cut(s) | 8, 839, 1833, 2916, 3055, 3063, 3225 |
| SspI | AATATT | 3 cut(s) | 87, 328, 1176 |
| SspMI | CTAG | 6 cut(s) | 968, 1434, 1604, 2144, 3308, 3348 |
| SstI | GAGCTC | 3 cut(s) | 876, 1503, 3213 |
| StyD4I | CCNGG | 7 cut(s) | 766, 1324, 1858, 2237, 2398, 2722, 2809 |
| StyI | CCWWGG | 2 cut(s) | 2835, 2938 |
| TaaI | ACNGT | 3 cut(s) | 1243, 1352, 3198 |
| TaiI | ACGT | 4 cut(s) | 99, 196, 555, 1497 |
| TaqI | TCGA | 6 cut(s) | 14, 714, 1279, 2634, 3200, 3256 |
| TaqII | GACCGA | 1 cut(s) | 3026 |
| TatI | WGTACW | 2 cut(s) | 1442, 2669 |
| TfiI | GAWTC | 9 cut(s) | 11, 118, 384, 1209, 1783, 2023, 2323, 2563, 2786 |
| TscAI | CASTG | 5 cut(s) | 1219, 2168, 2262, 2623, 2806 |
| TseFI | GTSAC | 3 cut(s) | 749, 1360, 1838 |
| Tsp45I | GTSAC | 3 cut(s) | 749, 1360, 1838 |
| TspDTI | ATGAA | 9 cut(s) | 186, 292, 506, 866, 927, 1478, 2867, 3183, 3341 |
| TspGWI | ACGGA | 1 cut(s) | 141 |
| TspRI | CASTG | 5 cut(s) | 1219, 2168, 2262, 2623, 2806 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2841 |
| Vha464I | CTTAAG | 3 cut(s) | 2369, 2527, 3086 |
| VneI | GTGCAC | 1 cut(s) | 2860 |
| VpaK11BI | GGWCC | 3 cut(s) | 764, 3407, 3431 |
| XapI | RAATTY | 5 cut(s) | 456, 513, 530, 1047, 3252 |
| XceI | RCATGY | 5 cut(s) | 77, 113, 365, 890, 1621 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3148 |
| XmnI | GAANNNNTTC | 2 cut(s) | 144, 1047 |
| XspI | CTAG | 6 cut(s) | 968, 1434, 1604, 2144, 3308, 3348 |
| Zsp2I | ATGCAT | 1 cut(s) | 1269 |