FvH4_5g21062

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
12671511 .. 12672349
839 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21062.t1

Sequence Viewer

Length: 429 bp
ATGCATGATTTGATACGAGACATGGGCAGAGCAATTGTTTGGTCAAAATCTCCTCAGGACCCTGGAAAACGTTGTAGACTGTGGGATGATGCAGATGCTACAGATGTATTGAGAGATAAATCTGGATCTGAAGCAATTGAAGGACTCACTCTGAAAATGTTGACATCTGATGCCAAAGCTAGTTTCAGTACAAAAGCATTTTCAAAGATGAAGAGGCTGAGATTGCTCAAACTCAATCACGTACAGCTCAGTGGAGGCTACAAATTTTTTTCCAATAAACTATGTTGGCTCTGCTGGCATGGATTCCCTTTAAAGTCAGTACCTAAAGACTTTAGTCTACAAAATGTAGTTGCAATGGACCTGCAGTACAGCAAACTGATACACCTTTGGGAGGATTCTAGGTTGCTTGAGAAGTTGGAAGATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

143

Amino Acids

16.33

Weight (kDa)

9.17

Isoelectric Point (pI)

53.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36930 AT5G36930 AT5G36930 AT5G36930
fragaria_vesca FvH4_3g45361 FvH4_3g45380 FvH4_5g21061 FvH4_5g21062 FvH4_5g21063 FvH4_5g32050 FvH4_5g32970 FvH4_5g32990 FvH4_5g34190 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34211 FvH4_5g34240 FvH4_5g34250
malus_domestica MD00G1011700.v1.1 MD00G1026100.v1.1 MD00G1026500.v1.1 MD00G1027000.v1.1 MD00G1027100.v1.1 MD00G1027700.v1.1 MD00G1027800.v1.1 MD00G1028000.v1.1 MD00G1220000.v1.1 MD02G1024400.v1.1 MD02G1024800.v1.1 MD02G1026000.v1.1 MD02G1026100.v1.1 MD02G1031800.v1.1 MD02G1038500.v1.1 MD02G1038700.v1.1 MD02G1039200.v1.1 MD02G1040600.v1.1 MD02G1040900.v1.1 MD02G1041200.v1.1 MD02G1041300.v1.1 MD02G1041700.v1.1 MD02G1042000.v1.1 MD02G1043800.v1.1 MD02G1043900.v1.1 MD02G1044300.v1.1 MD02G1045200.v1.1 MD02G1045300.v1.1 MD02G1051200.v1.1 MD02G1052200.v1.1 MD02G1052800.v1.1 MD02G1053100.v1.1 MD02G1053600.v1.1 MD02G1055500.v1.1 MD02G1063300.v1.1 MD02G1063400.v1.1 MD02G1063800.v1.1 MD02G1306500.v1.1 MD02G1306600.v1.1 MD02G1306700.v1.1 MD02G1306900.v1.1 MD02G1307200.v1.1 MD04G1011700.v1.1 MD05G1315400.v1.1 MD05G1316000.v1.1 MD05G1316700.v1.1 MD05G1317000.v1.1 MD05G1317300.v1.1 MD05G1317600.v1.1 MD05G1317700.v1.1 MD07G1102800.v1.1 MD07G1238200.v1.1 MD08G1175900.v1.1 MD08G1203600.v1.1 MD09G1024200.v1.1 MD09G1039600.v1.1 MD09G1044800.v1.1 MD09G1045100.v1.1 MD10G1038700.v1.1 MD10G1039000.v1.1 MD10G1039200.v1.1 MD10G1040000.v1.1 MD10G1040200.v1.1 MD10G1040600.v1.1 MD10G1040800.v1.1 MD10G1297300.v1.1 MD12G1247500.v1.1 MD12G1247900.v1.1 MD12G1248300.v1.1 MD12G1248800.v1.1 MD15G1103700.v1.1 MD15G1103800.v1.1 MD15G1104000.v1.1 MD15G1179600.v1.1 MD15G1182500.v1.1 MD16G1068200.v1.1 MD16G1068300.v1.1 MD17G1024600.v1.1 MD17G1024700.v1.1 MD17G1025000.v1.1 MD17G1025900.v1.1
prunus_persica Prupe.1G539800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G557100_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557300_v2.0.a1
pyrus_communis pycom02g02080 pycom02g02090 pycom02g02110 pycom02g03220 pycom02g03260 pycom02g03370 pycom02g03390 pycom02g03410 pycom02g03420 pycom02g03450 pycom02g03500 pycom02g03730 pycom02g03770 pycom02g04400 pycom02g04410 pycom02g04430 pycom02g04450 pycom02g04460 pycom02g04490 pycom02g05200 pycom02g25710 pycom02g25750 pycom02g25790 pycom02g25810 pycom02g25830 pycom04g00920 pycom04g00930 pycom04g00940 pycom05g29300 pycom05g29310 pycom05g29380 pycom05g29410 pycom07g06310 pycom07g21420 pycom08g15070 pycom08g17540 pycom08g17560 pycom08g17570 pycom10g02670 pycom10g02680 pycom10g02700 pycom10g02770 pycom10g02790 pycom10g02800 pycom10g02810 pycom10g25020 pycom10g25030 pycom10g25050 pycom10g25080 pycom111g01990 pycom111g02000 pycom111g02030 pycom111g02040 pycom111g02050 pycom111g02060 pycom12g22710 pycom12g22720 pycom12g22730 pycom12g22740 pycom12g22750 pycom12g22770 pycom12g22780 pycom12g22790 pycom12g22800 pycom12g22810 pycom12g22830 pycom12g22840 pycom12g22860 pycom15g09440 pycom15g09480 pycom15g16120 pycom15g32380 pycom16g05970 pycom17g02100
rosa_chinensis RchiOBHm_Chr2g0144661 RchiOBHm_Chr4g0407491 RchiOBHm_Chr4g0407501 RchiOBHm_Chr4g0412381 RchiOBHm_Chr7g0208191 RchiOBHm_Chr7g0208201 RchiOBHm_Chr7g0208211 RchiOBHm_Chr7g0208221 RchiOBHm_Chr7g0228071 RchiOBHm_Chr7g0228121 RchiOBHm_Chr7g0230971 RchiOBHm_Chr7g0230981 RchiOBHm_Chr7g0233901 RchiOBHm_Chr7g0233951 RchiOBHm_Chr7g0233961 RchiOBHm_Chr7g0233991 RchiOBHm_Chr7g0234021 RchiOBHm_Chr7g0234151 RchiOBHm_Chr7g0234161 RchiOBHm_Chr7g0234241 RchiOBHm_Chr7g0234501 RchiOBHm_Chr7g0234641 RchiOBHm_Chr7g0234771 RchiOBHm_Chr7g0234781 RchiOBHm_Chr7g0234991 RchiOBHm_Chr7g0241291 RchiOBHm_Chr7g0241301
rosa_laevigata RLG00000001186 RLG00000001187 RLG00000001212 RLG00000001226 RLG00000001233 RLG00000001590 RLG00000003242 RLG00000003243 RLG00000003249 RLG00000008688 RLG00000008690
rosa_multiflora Rmu_co7966574.1_g000001 Rmu_co8120830.1_g000001 Rmu_co8142226.1_g000001 Rmu_co8293083.1_g000001 Rmu_co8351227.1_g000001 Rmu_co8380159.1_g000001 Rmu_co8456505.1_g000001 Rmu_sc0000676.1_g000025 Rmu_sc0000706.1_g000018 Rmu_sc0000706.1_g000040 Rmu_sc0000740.1_g000029 Rmu_sc0000740.1_g000032 Rmu_sc0000740.1_g000037 Rmu_sc0000740.1_g000040 Rmu_sc0000762.1_g000003 Rmu_sc0000762.1_g000019 Rmu_sc0000762.1_g000034 Rmu_sc0000762.1_g000069 Rmu_sc0000892.1_g000001 Rmu_sc0000945.1_g000040 Rmu_sc0001913.1_g000037 Rmu_sc0001913.1_g000041 Rmu_sc0001913.1_g000049 Rmu_sc0002775.1_g000017 Rmu_sc0002775.1_g000018 Rmu_sc0002775.1_g000020 Rmu_sc0002775.1_g000021 Rmu_sc0002775.1_g000022 Rmu_sc0002775.1_g000025 Rmu_sc0002775.1_g000026 Rmu_sc0002775.1_g000028 Rmu_sc0002775.1_g000030 Rmu_sc0004858.1_g000002 Rmu_sc0004864.1_g000022 Rmu_sc0005038.1_g000023 Rmu_sc0005840.1_g000014 Rmu_sc0006724.1_g000003 Rmu_sc0006824.1_g000005 Rmu_sc0007869.1_g000003 Rmu_sc0007869.1_g000005 Rmu_sc0007869.1_g000008 Rmu_sc0008646.1_g000007 Rmu_sc0009637.1_g000009 Rmu_sc0010500.1_g000002 Rmu_sc0010500.1_g000012 Rmu_sc0012403.1_g000025 Rmu_sc0013768.1_g000025 Rmu_sc0015625.1_g000001 Rmu_sc0019715.1_g000001 Rmu_sc0021133.1_g000002 Rmu_sc0021904.1_g000001 Rmu_sc0021904.1_g000003 Rmu_sc0021904.1_g000004 Rmu_sc0022054.1_g000001 Rmu_sc0026025.1_g000001 Rmu_sc0036828.1_g000002 Rmu_sc0041808.1_g000001 Rmu_ssc0000012.1_g000001
rosa_roxburghii Rroxscaffold_3G00226370 Rroxscaffold_3G00226860 Rroxscaffold_3G00226900 Rroxscaffold_3G00226930 Rroxscaffold_3G00226940 Rroxscaffold_3G00226970 Rroxscaffold_3G00226980 Rroxscaffold_3G00231530 Rroxscaffold_3G00237090 Rroxscaffold_3G00250760 Rroxscaffold_3G00250800
rosa_rugosa Rorug04G0082300 Rorug07G0101800 Rorug07G0102000 Rorug07G0102100 Rorug07G0221200 Rorug07G0245700 Rorug07G0245700 Rorug07G0245700 Rorug07G0263900 Rorug07G0264000 Rorug07G0264000 Rorug07G0264500 Rorug07G0282900 Rorug07G0282900 Rorug07G0283100 Rorug07G0283200.1 Rorug07G0283300 Rorug07G0283900 Rorug07G0284000 Rorug07G0284100 Rorug07G0284300 Rorug07G0284400 Rorug07G0284500 Rorug07G0285000 Rorug07G0285200 Rorug07G0285300 Rorug07G0285500 Rorug07G0286800 Rorug07G0286900 Rorug07G0287100 Rorug07G0287200
rosa_samantha Rh7AG236100 Rh7AG236200 Rh7AG236300 Rh7AG440000 Rh7AG440100 Rh7BG411900 Rh7BG412000 Rh7BG412600 Rh7CG251300 Rh7CG417700 Rh7CG460100 Rh7DG242100 Rh7DG242200 Rh7DG242300 Rh7DG429300
rosa_wichuraiana Rw0G005070 Rw0G010780 Rw0G012530 Rw7G020110 Rw7G020160 Rw7G020170 Rw7G033210 Rw7G033230 Rw7G033250 Rw7G034540 Rw7G035150 Rw7G036190 Rw7G036210 Rw7G036260 Rw7G036270 Rw7G036290 Rw7G036300 Rw7G036310 Rw7G036350 Rw7G036360 Rw7G036440 Rw7G036510 Rw7G036530 Rw7G036570 Rw7G036590 Rw7G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 369
AccI GTMKAC 2 cut(s) 76, 337
AclI AACGTT 1 cut(s) 70
AclWI GGATC 1 cut(s) 133
AcsI RAATTY 1 cut(s) 263
AcuI CTGAAG 1 cut(s) 150
AfaI GTAC 4 cut(s) 190, 243, 321, 368
AfiI CCNNNNNNNGG 1 cut(s) 391
AgsI TTSAA 2 cut(s) 140, 204
AjnI CCWGG 1 cut(s) 61
AjuI GAANNNNNNNTTGG 2 cut(s) 167, 199
AluBI AGCT 2 cut(s) 179, 247
AluI AGCT 2 cut(s) 179, 247
Alw26I GTCTC 1 cut(s) 12
AlwI GGATC 1 cut(s) 133
ApoI RAATTY 1 cut(s) 263
AspS9I GGNCC 2 cut(s) 58, 358
AvaII GGWCC 2 cut(s) 58, 358
AxyI CCTNAGG 1 cut(s) 54
BciT130I CCWGG 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 2 cut(s) 180, 399
BfmI CTRYAG 2 cut(s) 99, 362
BfuAI ACCTGC 1 cut(s) 369
Bme1390I CCNGG 1 cut(s) 63
Bme18I GGWCC 2 cut(s) 58, 358
BmgT120I GGNCC 2 cut(s) 58, 358
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 63
BmsI GCATC 3 cut(s) 79, 85, 160
BoxI GACNNNNGTC 1 cut(s) 333
BpuEI CTTGAG 1 cut(s) 428
BsaAI YACGTR 1 cut(s) 241
BsaJI CCNNGG 1 cut(s) 61
Bsc4I CCNNNNNNNGG 1 cut(s) 391
Bse21I CCTNAGG 1 cut(s) 54
Bse3DI GCAATG 1 cut(s) 360
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 61
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 391
BseMI GCAATG 1 cut(s) 360
BseMII CTCAG 3 cut(s) 68, 209, 262
BseRI GAGGAG 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 391
BsmAI GTCTC 1 cut(s) 12
Bsp143I GATC 1 cut(s) 125
BspCNI CTCAG 3 cut(s) 67, 210, 261
BspLI GGNNCC 1 cut(s) 60
BspMAI CTGCAG 1 cut(s) 366
BspMI ACCTGC 1 cut(s) 369
BspPI GGATC 1 cut(s) 133
BsrDI GCAATG 1 cut(s) 360
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 1 cut(s) 125
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 81
Bst6I CTCTTC 1 cut(s) 206
BstBAI YACGTR 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 3 cut(s) 54, 218, 248
BstENI CCTNNNNNAGG 1 cut(s) 389
BstF5I GGATG 1 cut(s) 91
BstKTI GATC 1 cut(s) 128
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 1 cut(s) 125
BstMWI GCNNNNNNNGC 2 cut(s) 223, 295
BstNI CCWGG 1 cut(s) 63
BstPAI GACNNNNGTC 1 cut(s) 333
BstSCI CCNGG 1 cut(s) 61
BstSFI CTRYAG 2 cut(s) 99, 362
BstX2I RGATCY 1 cut(s) 125
BstYI RGATCY 1 cut(s) 125
Bsu36I CCTNAGG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 256
BveI ACCTGC 1 cut(s) 369
Cac8I GCNNGC 1 cut(s) 296
Cfr13I GGNCC 2 cut(s) 58, 358
Csp6I GTAC 4 cut(s) 189, 242, 320, 367
CviAII CATG 3 cut(s) 5, 22, 299
CviJI RGCY 5 cut(s) 179, 217, 247, 258, 289
CviKI_1 RGCY 5 cut(s) 179, 217, 247, 258, 289
CviQI GTAC 4 cut(s) 189, 242, 320, 367
DdeI CTNAG 3 cut(s) 54, 218, 248
DpnI GATC 1 cut(s) 127
DpnII GATC 1 cut(s) 125
DraI TTTAAA 1 cut(s) 312
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Eco47I GGWCC 2 cut(s) 58, 358
Eco57I CTGAAG 1 cut(s) 150
Eco81I CCTNAGG 1 cut(s) 54
EcoNI CCTNNNNNAGG 1 cut(s) 389
EcoO109I RGGNCCY 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 61
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 8, 25, 302
FaiI YATR 4 cut(s) 6, 23, 283, 300
FatI CATG 3 cut(s) 4, 21, 298
FblI GTMKAC 2 cut(s) 76, 337
FokI GGATG 1 cut(s) 98
FspBI CTAG 2 cut(s) 180, 399
Hin1II CATG 3 cut(s) 8, 25, 302
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HinfI GANTC 4 cut(s) 144, 303, 395, 422
Hpy166II GTNNAC 3 cut(s) 77, 162, 338
Hpy188I TCNGA 3 cut(s) 130, 153, 169
Hpy188III TCNNGA 2 cut(s) 56, 123
Hpy8I GTNNAC 3 cut(s) 77, 162, 338
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 1 cut(s) 81
HpyCH4IV ACGT 2 cut(s) 70, 240
HpyCH4V TGCA 4 cut(s) 4, 92, 353, 364
HpyF10VI GCNNNNNNNGC 2 cut(s) 223, 295
HpyF3I CTNAG 3 cut(s) 54, 218, 248
HpySE526I ACGT 2 cut(s) 70, 240
Hsp92II CATG 3 cut(s) 8, 25, 302
Kzo9I GATC 1 cut(s) 125
LpnPI CCDG 6 cut(s) 41, 48, 75, 108, 280, 374
LweI GCATC 3 cut(s) 79, 85, 160
MaeI CTAG 2 cut(s) 180, 399
MaeII ACGT 2 cut(s) 70, 240
MalI GATC 1 cut(s) 127
MboI GATC 1 cut(s) 125
MboII GAAGA 1 cut(s) 223
MfeI CAATTG 2 cut(s) 33, 135
MflI RGATCY 1 cut(s) 125
MluCI AATT 3 cut(s) 33, 135, 263
MlyI GAGTC 1 cut(s) 138
MmeI TCCRAC 1 cut(s) 396
MnlI CCTC 4 cut(s) 63, 207, 248, 385
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 311, 427
MspR9I CCNGG 1 cut(s) 63
MunI CAATTG 2 cut(s) 33, 135
MvaI CCWGG 1 cut(s) 63
MwoI GCNNNNNNNGC 2 cut(s) 223, 295
NdeII GATC 1 cut(s) 125
NlaIII CATG 3 cut(s) 8, 25, 302
NlaIV GGNNCC 1 cut(s) 60
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 3 cut(s) 303, 395, 422
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
Ppu21I YACGTR 1 cut(s) 241
PpuMI RGGWCCY 1 cut(s) 58
PshAI GACNNNNGTC 1 cut(s) 333
Psp1406I AACGTT 1 cut(s) 70
Psp5II RGGWCCY 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 2 cut(s) 58, 358
PspPPI RGGWCCY 1 cut(s) 58
PstI CTGCAG 1 cut(s) 366
PsuI RGATCY 1 cut(s) 125
RsaI GTAC 4 cut(s) 190, 243, 321, 368
RsaNI GTAC 4 cut(s) 189, 242, 320, 367
SaqAI TTAA 2 cut(s) 311, 427
Sau3AI GATC 1 cut(s) 125
Sau96I GGNCC 2 cut(s) 58, 358
SchI GAGTC 1 cut(s) 138
ScrFI CCNGG 1 cut(s) 63
SetI ASST 8 cut(s) 73, 181, 243, 249, 325, 363, 387, 404
SfaNI GCATC 3 cut(s) 79, 85, 160
SfcI CTRYAG 2 cut(s) 99, 362
SinI GGWCC 2 cut(s) 58, 358
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 3 cut(s) 33, 135, 263
SspMI CTAG 2 cut(s) 180, 399
StyD4I CCNGG 1 cut(s) 61
TaaI ACNGT 1 cut(s) 81
TaiI ACGT 2 cut(s) 73, 243
TasI AATT 3 cut(s) 33, 135, 263
TatI WGTACW 2 cut(s) 188, 366
TfiI GAWTC 3 cut(s) 303, 395, 422
Tru1I TTAA 2 cut(s) 311, 427
Tru9I TTAA 2 cut(s) 311, 427
TscAI CASTG 1 cut(s) 256
TspDTI ATGAA 1 cut(s) 224
TspRI CASTG 1 cut(s) 256
VpaK11BI GGWCC 2 cut(s) 58, 358
XagI CCTNNNNNAGG 1 cut(s) 389
XapI RAATTY 1 cut(s) 263
XmiI GTMKAC 2 cut(s) 76, 337
XspI CTAG 2 cut(s) 180, 399
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.