TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 2 - 132 | 3.2e-30 | TIR domain |
| TIR | PF01582 | 151 - 332 | 5.5e-47 | TIR domain |
| TIR_2 | PF13676 | 155 - 250 | 2.6e-15 | TIR domain |
| NB-ARC | PF00931 | 347 - 513 | 2.9e-16 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 582 - 649 | 9.4e-15 | Disease resistance protein Roq1-like, winged-helix domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1152 |
| Acc65I | GGTACC | 1 cut(s) | 1298 |
| AccB1I | GGYRCC | 1 cut(s) | 1298 |
| AccI | GTMKAC | 1 cut(s) | 483 |
| AccII | CGCG | 2 cut(s) | 490, 1398 |
| AciI | CCGC | 2 cut(s) | 477, 653 |
| AclWI | GGATC | 6 cut(s) | 23, 90, 134, 629, 696, 740 |
| AcoI | YGGCCR | 3 cut(s) | 405, 1011, 1926 |
| AcsI | RAATTY | 5 cut(s) | 895, 1101, 1158, 1270, 1949 |
| AcuI | CTGAAG | 3 cut(s) | 1314, 1466, 1572 |
| AfaI | GTAC | 6 cut(s) | 455, 1300, 1338, 2104, 2298, 2658 |
| AflIII | ACRYGT | 5 cut(s) | 112, 400, 459, 718, 1006 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2281 |
| AhlI | ACTAGT | 1 cut(s) | 1246 |
| AjnI | CCWGG | 3 cut(s) | 1411, 1690, 1963 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1384, 1416, 1652, 1684 |
| Alw21I | GWGCWC | 2 cut(s) | 389, 995 |
| AlwI | GGATC | 6 cut(s) | 23, 90, 134, 629, 696, 740 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 284, 890 |
| Ama87I | CYCGRG | 1 cut(s) | 1954 |
| AoxI | GGCC | 5 cut(s) | 405, 505, 1011, 1544, 1926 |
| ApeKI | GCWGC | 2 cut(s) | 284, 890 |
| ApoI | RAATTY | 5 cut(s) | 895, 1101, 1158, 1270, 1949 |
| AseI | ATTAAT | 1 cut(s) | 2343 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 427, 1033 |
| Asp718I | GGTACC | 1 cut(s) | 1298 |
| AspLEI | GCGC | 1 cut(s) | 492 |
| AspS9I | GGNCC | 2 cut(s) | 1409, 1855 |
| AsuC2I | CCSGG | 4 cut(s) | 542, 602, 1955, 1956 |
| AsuHPI | GGTGA | 9 cut(s) | 88, 293, 694, 899, 1706, 1993, 2135, 2367, 2438 |
| AvaI | CYCGRG | 1 cut(s) | 1954 |
| AvaII | GGWCC | 2 cut(s) | 1409, 1855 |
| BaeGI | GKGCMC | 1 cut(s) | 330 |
| BalI | TGGCCA | 3 cut(s) | 407, 1013, 1928 |
| BanI | GGYRCC | 1 cut(s) | 1298 |
| BanII | GRGCYC | 1 cut(s) | 2315 |
| BbsI | GAAGAC | 2 cut(s) | 22, 628 |
| Bbv12I | GWGCWC | 2 cut(s) | 389, 995 |
| BbvI | GCAGC | 2 cut(s) | 271, 877 |
| BccI | CCATC | 3 cut(s) | 1782, 1814, 2602 |
| BceAI | ACGGC | 1 cut(s) | 534 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 481, 515 |
| BciT130I | CCWGG | 3 cut(s) | 1413, 1692, 1965 |
| BciVI | GTATCC | 1 cut(s) | 530 |
| BclI | TGATCA | 1 cut(s) | 2065 |
| BcnI | CCSGG | 4 cut(s) | 542, 602, 1955, 1956 |
| BcuI | ACTAGT | 1 cut(s) | 1246 |
| BfaI | CTAG | 5 cut(s) | 1247, 1736, 2094, 2264, 2713 |
| BfmI | CTRYAG | 1 cut(s) | 285 |
| BfuI | GTATCC | 1 cut(s) | 530 |
| BglII | AGATCT | 1 cut(s) | 1685 |
| BisI | GCNGC | 2 cut(s) | 285, 891 |
| BlsI | GCNGC | 2 cut(s) | 286, 892 |
| Bme1390I | CCNGG | 7 cut(s) | 542, 602, 1413, 1692, 1955, 1956, 1965 |
| Bme18I | GGWCC | 2 cut(s) | 1409, 1855 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2281 |
| BmeT110I | CYCGRG | 1 cut(s) | 1954 |
| BmgT120I | GGNCC | 2 cut(s) | 1409, 1855 |
| BmiI | GGNNCC | 3 cut(s) | 1300, 1856, 2314 |
| BmrFI | CCNGG | 7 cut(s) | 542, 602, 1413, 1692, 1955, 1956, 1965 |
| BmrI | ACTGGG | 2 cut(s) | 333, 939 |
| BmsI | GCATC | 1 cut(s) | 1734 |
| BmuI | ACTGGG | 2 cut(s) | 333, 939 |
| BpiI | GAAGAC | 2 cut(s) | 22, 628 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 256, 288, 862, 894 |
| BpmI | CTGGAG | 4 cut(s) | 1529, 1674, 2052, 2187 |
| BpuEI | CTTGAG | 3 cut(s) | 487, 1555, 1977 |
| BpuMI | CCSGG | 4 cut(s) | 542, 602, 1955, 1956 |
| Bsa29I | ATCGAT | 1 cut(s) | 552 |
| BsaJI | CCNNGG | 3 cut(s) | 1954, 1963, 2519 |
| Bse1I | ACTGG | 7 cut(s) | 322, 328, 934, 1302, 2035, 2118, 2170 |
| Bse3DI | GCAATG | 2 cut(s) | 499, 948 |
| BseBI | CCWGG | 3 cut(s) | 1413, 1692, 1965 |
| BseCI | ATCGAT | 1 cut(s) | 552 |
| BseDI | CCNNGG | 3 cut(s) | 1954, 1963, 2519 |
| BseGI | GGATG | 7 cut(s) | 204, 810, 1162, 1793, 1829, 2573, 2642 |
| BseMI | GCAATG | 2 cut(s) | 499, 948 |
| BseMII | CTCAG | 6 cut(s) | 980, 1052, 2123, 2161, 2362, 2430 |
| BseNI | ACTGG | 7 cut(s) | 322, 328, 934, 1302, 2035, 2118, 2170 |
| BseRI | GAGGAG | 1 cut(s) | 500 |
| BseSI | GKGCMC | 1 cut(s) | 330 |
| BseXI | GCAGC | 2 cut(s) | 271, 877 |
| BsgI | GTGCAG | 2 cut(s) | 112, 718 |
| Bsh1236I | CGCG | 2 cut(s) | 490, 1398 |
| BshFI | GGCC | 5 cut(s) | 407, 507, 1013, 1546, 1928 |
| BshNI | GGYRCC | 1 cut(s) | 1298 |
| BshVI | ATCGAT | 1 cut(s) | 552 |
| BsiHKAI | GWGCWC | 2 cut(s) | 389, 995 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1954 |
| BsiSI | CCGG | 3 cut(s) | 541, 601, 1955 |
| BslFI | GGGAC | 5 cut(s) | 123, 729, 1217, 1805, 2378 |
| BsmFI | GGGAC | 5 cut(s) | 123, 729, 1217, 1805, 2378 |
| BsmI | GAATGC | 1 cut(s) | 1384 |
| BsnI | GGCC | 5 cut(s) | 407, 507, 1013, 1546, 1928 |
| BsoBI | CYCGRG | 1 cut(s) | 1954 |
| Bsp1286I | GDGCHC | 4 cut(s) | 330, 389, 995, 2315 |
| Bsp1407I | TGTACA | 1 cut(s) | 2296 |
| Bsp68I | TCGCGA | 1 cut(s) | 1398 |
| BspACI | CCGC | 2 cut(s) | 477, 653 |
| BspANI | GGCC | 5 cut(s) | 407, 507, 1013, 1546, 1928 |
| BspCNI | CTCAG | 6 cut(s) | 981, 1051, 2124, 2160, 2361, 2431 |
| BspDI | ATCGAT | 1 cut(s) | 552 |
| BspFNI | CGCG | 2 cut(s) | 490, 1398 |
| BspLI | GGNNCC | 3 cut(s) | 1300, 1856, 2314 |
| BspMAI | CTGCAG | 1 cut(s) | 289 |
| BspPI | GGATC | 6 cut(s) | 23, 90, 134, 629, 696, 740 |
| BspT107I | GGYRCC | 1 cut(s) | 1298 |
| BsrDI | GCAATG | 2 cut(s) | 499, 948 |
| BsrGI | TGTACA | 1 cut(s) | 2296 |
| BsrI | ACTGG | 7 cut(s) | 322, 328, 934, 1302, 2035, 2118, 2170 |
| BssECI | CCNNGG | 3 cut(s) | 1954, 1963, 2519 |
| Bst2UI | CCWGG | 3 cut(s) | 1413, 1692, 1965 |
| Bst4CI | ACNGT | 6 cut(s) | 597, 1135, 1592, 1618, 1882, 2498 |
| Bst6I | CTCTTC | 4 cut(s) | 192, 798, 2400, 2520 |
| BstAUI | TGTACA | 1 cut(s) | 2296 |
| BstC8I | GCNNGC | 4 cut(s) | 505, 1523, 1527, 2210 |
| BstDEI | CTNAG | 9 cut(s) | 989, 1038, 2132, 2147, 2348, 2439, 2489, 2507, 2702 |
| BstEII | GGTNACC | 3 cut(s) | 299, 905, 1958 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1551 |
| BstF5I | GGATG | 7 cut(s) | 204, 810, 1162, 1793, 1829, 2573, 2642 |
| BstFNI | CGCG | 2 cut(s) | 490, 1398 |
| BstHHI | GCGC | 1 cut(s) | 492 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 504, 2669 |
| BstNI | CCWGG | 3 cut(s) | 1413, 1692, 1965 |
| BstNSI | RCATGY | 9 cut(s) | 116, 404, 439, 463, 722, 1010, 1529, 2092, 2281 |
| BstPI | GGTNACC | 3 cut(s) | 299, 905, 1958 |
| BstSCI | CCNGG | 7 cut(s) | 540, 600, 1411, 1690, 1953, 1954, 1963 |
| BstSFI | CTRYAG | 1 cut(s) | 285 |
| BstSLI | GKGCMC | 1 cut(s) | 330 |
| BstUI | CGCG | 2 cut(s) | 490, 1398 |
| BstV1I | GCAGC | 2 cut(s) | 271, 877 |
| BstV2I | GAAGAC | 2 cut(s) | 22, 628 |
| BstX2I | RGATCY | 5 cut(s) | 15, 95, 621, 701, 1685 |
| BstYI | RGATCY | 5 cut(s) | 15, 95, 621, 701, 1685 |
| Bsu15I | ATCGAT | 1 cut(s) | 552 |
| BsuI | GTATCC | 1 cut(s) | 530 |
| BsuRI | GGCC | 5 cut(s) | 407, 507, 1013, 1546, 1928 |
| BsuTUI | ATCGAT | 1 cut(s) | 552 |
| BtsCI | GGATG | 7 cut(s) | 204, 810, 1162, 1793, 1829, 2573, 2642 |
| BtsI | GCAGTG | 3 cut(s) | 266, 872, 1291 |
| BtsIMutI | CAGTG | 9 cut(s) | 266, 315, 321, 593, 872, 921, 927, 1291, 2163 |
| BtuMI | TCGCGA | 1 cut(s) | 1398 |
| Cac8I | GCNNGC | 4 cut(s) | 505, 1523, 1527, 2210 |
| CaiI | CAGNNNCTG | 2 cut(s) | 284, 890 |
| CfoI | GCGC | 1 cut(s) | 492 |
| Cfr13I | GGNCC | 2 cut(s) | 1409, 1855 |
| Cfr9I | CCCGGG | 1 cut(s) | 1954 |
| ClaI | ATCGAT | 1 cut(s) | 552 |
| Csp6I | GTAC | 6 cut(s) | 454, 1299, 1337, 2103, 2297, 2657 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1560, 1595 |
| CviQI | GTAC | 6 cut(s) | 454, 1299, 1337, 2103, 2297, 2657 |
| DdeI | CTNAG | 9 cut(s) | 989, 1038, 2132, 2147, 2348, 2439, 2489, 2507, 2702 |
| DraI | TTTAAA | 2 cut(s) | 567, 1639 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2281 |
| EaeI | YGGCCR | 3 cut(s) | 405, 1011, 1926 |
| Eam1104I | CTCTTC | 4 cut(s) | 192, 798, 2400, 2520 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2281 |
| EarI | CTCTTC | 4 cut(s) | 192, 798, 2400, 2520 |
| Eco147I | AGGCCT | 2 cut(s) | 507, 1546 |
| Eco24I | GRGCYC | 1 cut(s) | 2315 |
| Eco32I | GATATC | 1 cut(s) | 1559 |
| Eco47I | GGWCC | 2 cut(s) | 1409, 1855 |
| Eco57I | CTGAAG | 3 cut(s) | 1314, 1466, 1572 |
| Eco88I | CYCGRG | 1 cut(s) | 1954 |
| Eco91I | GGTNACC | 3 cut(s) | 299, 905, 1958 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1551 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1855 |
| EcoO65I | GGTNACC | 3 cut(s) | 299, 905, 1958 |
| EcoRI | GAATTC | 1 cut(s) | 1270 |
| EcoRII | CCWGG | 3 cut(s) | 1411, 1690, 1963 |
| EcoRV | GATATC | 1 cut(s) | 1559 |
| EcoT22I | ATGCAT | 1 cut(s) | 1908 |
| EcoT38I | GRGCYC | 1 cut(s) | 2315 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 324, 356, 930, 962, 1545, 1577, 2461, 2493 |
| FaqI | GGGAC | 5 cut(s) | 123, 729, 1217, 1805, 2378 |
| FbaI | TGATCA | 1 cut(s) | 2065 |
| FblI | GTMKAC | 1 cut(s) | 483 |
| Fnu4HI | GCNGC | 2 cut(s) | 285, 891 |
| FokI | GGATG | 7 cut(s) | 191, 797, 1149, 1800, 1836, 2580, 2629 |
| FriOI | GRGCYC | 1 cut(s) | 2315 |
| Fsp4HI | GCNGC | 2 cut(s) | 285, 891 |
| FspBI | CTAG | 5 cut(s) | 1247, 1736, 2094, 2264, 2713 |
| GlaI | GCGC | 1 cut(s) | 491 |
| GluI | GCNGC | 2 cut(s) | 285, 891 |
| GsuI | CTGGAG | 4 cut(s) | 1529, 1674, 2052, 2187 |
| HaeIII | GGCC | 5 cut(s) | 407, 507, 1013, 1546, 1928 |
| HapII | CCGG | 3 cut(s) | 541, 601, 1955 |
| HhaI | GCGC | 1 cut(s) | 492 |
| Hin6I | GCGC | 1 cut(s) | 490 |
| HinP1I | GCGC | 1 cut(s) | 490 |
| HincII | GTYRAC | 1 cut(s) | 964 |
| HindII | GTYRAC | 1 cut(s) | 964 |
| HindIII | AAGCTT | 1 cut(s) | 338 |
| HpaII | CCGG | 3 cut(s) | 541, 601, 1955 |
| HphI | GGTGA | 9 cut(s) | 88, 293, 694, 899, 1706, 1993, 2135, 2367, 2438 |
| Hpy166II | GTNNAC | 7 cut(s) | 484, 964, 1217, 1465, 1865, 2163, 2485 |
| Hpy8I | GTNNAC | 7 cut(s) | 484, 964, 1217, 1465, 1865, 2163, 2485 |
| HpyAV | CCTTC | 8 cut(s) | 153, 759, 1289, 1547, 1724, 1744, 2036, 2414 |
| HpyCH4III | ACNGT | 6 cut(s) | 597, 1135, 1592, 1618, 1882, 2498 |
| HpyCH4IV | ACGT | 3 cut(s) | 232, 838, 2154 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 504, 2669 |
| HpyF3I | CTNAG | 9 cut(s) | 989, 1038, 2132, 2147, 2348, 2439, 2489, 2507, 2702 |
| HpySE526I | ACGT | 3 cut(s) | 232, 838, 2154 |
| HspAI | GCGC | 1 cut(s) | 490 |
| KpnI | GGTACC | 1 cut(s) | 1302 |
| Ksp22I | TGATCA | 1 cut(s) | 2065 |
| LmnI | GCTCC | 2 cut(s) | 1510, 2318 |
| Lsp1109I | GCAGC | 2 cut(s) | 271, 877 |
| LweI | GCATC | 1 cut(s) | 1734 |
| MaeI | CTAG | 5 cut(s) | 1247, 1736, 2094, 2264, 2713 |
| MaeII | ACGT | 3 cut(s) | 232, 838, 2154 |
| MaeIII | GTNAC | 6 cut(s) | 299, 905, 1804, 1876, 1958, 2084 |
| MflI | RGATCY | 5 cut(s) | 15, 95, 621, 701, 1685 |
| MhlI | GDGCHC | 4 cut(s) | 330, 389, 995, 2315 |
| MlsI | TGGCCA | 3 cut(s) | 407, 1013, 1928 |
| MluNI | TGGCCA | 3 cut(s) | 407, 1013, 1928 |
| MlyI | GAGTC | 2 cut(s) | 17, 2466 |
| MmeI | TCCRAC | 3 cut(s) | 400, 1006, 1078 |
| Mox20I | TGGCCA | 3 cut(s) | 407, 1013, 1928 |
| Mph1103I | ATGCAT | 1 cut(s) | 1908 |
| MroXI | GAANNNNTTC | 2 cut(s) | 427, 1033 |
| MscI | TGGCCA | 3 cut(s) | 407, 1013, 1928 |
| Msp20I | TGGCCA | 3 cut(s) | 407, 1013, 1928 |
| MspI | CCGG | 3 cut(s) | 541, 601, 1955 |
| MspR9I | CCNGG | 7 cut(s) | 542, 602, 1413, 1692, 1955, 1956, 1965 |
| Mva1269I | GAATGC | 1 cut(s) | 1384 |
| MvaI | CCWGG | 3 cut(s) | 1413, 1692, 1965 |
| MvnI | CGCG | 2 cut(s) | 490, 1398 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 504, 2669 |
| NciI | CCSGG | 4 cut(s) | 542, 602, 1955, 1956 |
| NlaIV | GGNNCC | 3 cut(s) | 1300, 1856, 2314 |
| NmuCI | GTSAC | 4 cut(s) | 299, 905, 1804, 2084 |
| NruI | TCGCGA | 1 cut(s) | 1398 |
| NsiI | ATGCAT | 1 cut(s) | 1908 |
| NspI | RCATGY | 9 cut(s) | 116, 404, 439, 463, 722, 1010, 1529, 2092, 2281 |
| PaeI | GCATGC | 1 cut(s) | 1529 |
| PceI | AGGCCT | 2 cut(s) | 507, 1546 |
| PciI | ACATGT | 5 cut(s) | 112, 400, 459, 718, 1006 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 558 |
| PctI | GAATGC | 1 cut(s) | 1384 |
| PdmI | GAANNNNTTC | 2 cut(s) | 427, 1033 |
| PflFI | GACNNNGTC | 1 cut(s) | 1802 |
| PfoI | TCCNGGA | 1 cut(s) | 1411 |
| PkrI | GCNGC | 2 cut(s) | 286, 892 |
| PleI | GAGTC | 2 cut(s) | 16, 2466 |
| PpsI | GAGTC | 2 cut(s) | 16, 2466 |
| PpuMI | RGGWCCY | 1 cut(s) | 1855 |
| PscI | ACATGT | 5 cut(s) | 112, 400, 459, 718, 1006 |
| PshBI | ATTAAT | 1 cut(s) | 2343 |
| PsiI | TTATAA | 1 cut(s) | 1152 |
| Psp5II | RGGWCCY | 1 cut(s) | 1855 |
| Psp6I | CCWGG | 3 cut(s) | 1411, 1690, 1963 |
| PspEI | GGTNACC | 3 cut(s) | 299, 905, 1958 |
| PspGI | CCWGG | 3 cut(s) | 1411, 1690, 1963 |
| PspN4I | GGNNCC | 3 cut(s) | 1300, 1856, 2314 |
| PspPI | GGNCC | 2 cut(s) | 1409, 1855 |
| PspPPI | RGGWCCY | 1 cut(s) | 1855 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 446, 478 |
| PstI | CTGCAG | 1 cut(s) | 289 |
| PstNI | CAGNNNCTG | 2 cut(s) | 284, 890 |
| PsuI | RGATCY | 5 cut(s) | 15, 95, 621, 701, 1685 |
| PsyI | GACNNNGTC | 1 cut(s) | 1802 |
| RruI | TCGCGA | 1 cut(s) | 1398 |
| RsaI | GTAC | 6 cut(s) | 455, 1300, 1338, 2104, 2298, 2658 |
| RsaNI | GTAC | 6 cut(s) | 454, 1299, 1337, 2103, 2297, 2657 |
| SatI | GCNGC | 2 cut(s) | 285, 891 |
| Sau96I | GGNCC | 2 cut(s) | 1409, 1855 |
| SchI | GAGTC | 2 cut(s) | 17, 2466 |
| ScrFI | CCNGG | 7 cut(s) | 542, 602, 1413, 1692, 1955, 1956, 1965 |
| SduI | GDGCHC | 4 cut(s) | 330, 389, 995, 2315 |
| SfaNI | GCATC | 1 cut(s) | 1734 |
| SfcI | CTRYAG | 1 cut(s) | 285 |
| SinI | GGWCC | 2 cut(s) | 1409, 1855 |
| SmaI | CCCGGG | 1 cut(s) | 1956 |
| SmiI | ATTTAAAT | 1 cut(s) | 567 |
| SmlI | CTYRAG | 3 cut(s) | 466, 1570, 1992 |
| SmoI | CTYRAG | 3 cut(s) | 466, 1570, 1992 |
| SpeI | ACTAGT | 1 cut(s) | 1246 |
| SphI | GCATGC | 1 cut(s) | 1529 |
| SseBI | AGGCCT | 2 cut(s) | 507, 1546 |
| SsiI | CCGC | 2 cut(s) | 477, 653 |
| SspI | AATATT | 3 cut(s) | 126, 732, 970 |
| SspMI | CTAG | 5 cut(s) | 1247, 1736, 2094, 2264, 2713 |
| StuI | AGGCCT | 2 cut(s) | 507, 1546 |
| StyD4I | CCNGG | 7 cut(s) | 540, 600, 1411, 1690, 1953, 1954, 1963 |
| SwaI | ATTTAAAT | 1 cut(s) | 567 |
| TaaI | ACNGT | 6 cut(s) | 597, 1135, 1592, 1618, 1882, 2498 |
| TaiI | ACGT | 3 cut(s) | 235, 841, 2157 |
| TaqI | TCGA | 8 cut(s) | 11, 53, 552, 609, 617, 659, 1324, 1728 |
| TatI | WGTACW | 2 cut(s) | 2102, 2296 |
| TscAI | CASTG | 9 cut(s) | 266, 322, 328, 600, 872, 928, 934, 1291, 2170 |
| TseFI | GTSAC | 4 cut(s) | 299, 905, 1804, 2084 |
| TseI | GCWGC | 2 cut(s) | 284, 890 |
| Tsp45I | GTSAC | 4 cut(s) | 299, 905, 1804, 2084 |
| TspDTI | ATGAA | 7 cut(s) | 1151, 1377, 1505, 1509, 1515, 1680, 2138 |
| TspGWI | ACGGA | 2 cut(s) | 404, 1850 |
| TspMI | CCCGGG | 1 cut(s) | 1954 |
| TspRI | CASTG | 9 cut(s) | 266, 322, 328, 600, 872, 928, 934, 1291, 2170 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1802 |
| VpaK11BI | GGWCC | 2 cut(s) | 1409, 1855 |
| VspI | ATTAAT | 1 cut(s) | 2343 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1551 |
| XapI | RAATTY | 5 cut(s) | 895, 1101, 1158, 1270, 1949 |
| XceI | RCATGY | 9 cut(s) | 116, 404, 439, 463, 722, 1010, 1529, 2092, 2281 |
| XmaI | CCCGGG | 1 cut(s) | 1954 |
| XmiI | GTMKAC | 1 cut(s) | 483 |
| XmnI | GAANNNNTTC | 2 cut(s) | 427, 1033 |
| XspI | CTAG | 5 cut(s) | 1247, 1736, 2094, 2264, 2713 |
| Zsp2I | ATGCAT | 1 cut(s) | 1908 |