TMV resistance protein N-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1836 |
| AccB1I | GGYRCC | 1 cut(s) | 1428 |
| AccII | CGCG | 1 cut(s) | 236 |
| AciI | CCGC | 3 cut(s) | 76, 236, 1831 |
| AcsI | RAATTY | 8 cut(s) | 648, 1115, 1245, 1511, 1618, 2706, 2790, 3083 |
| AcuI | CTGAAG | 4 cut(s) | 43, 462, 513, 2696 |
| AcyI | GRCGYC | 1 cut(s) | 1549 |
| AfaI | GTAC | 9 cut(s) | 233, 551, 891, 1005, 1651, 1704, 1848, 2253, 3223 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 103, 484, 485, 2326, 3073 |
| AflII | CTTAAG | 1 cut(s) | 2057 |
| AflIII | ACRYGT | 4 cut(s) | 45, 546, 1000, 2942 |
| AhlI | ACTAGT | 1 cut(s) | 2468 |
| AjiI | CACGTC | 1 cut(s) | 46 |
| AjnI | CCWGG | 9 cut(s) | 341, 537, 964, 1164, 1635, 1865, 2185, 2587, 2716 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 536, 568, 1104, 1136, 2854, 2886 |
| Alw21I | GWGCWC | 3 cut(s) | 1026, 1074, 2642 |
| Alw26I | GTCTC | 3 cut(s) | 1476, 1669, 2675 |
| Alw44I | GTGCAC | 2 cut(s) | 1022, 2638 |
| Ama87I | CYCGRG | 1 cut(s) | 223 |
| AoxI | GGCC | 3 cut(s) | 90, 295, 922 |
| ApaLI | GTGCAC | 2 cut(s) | 1022, 2638 |
| ApeKI | GCWGC | 3 cut(s) | 1942, 1974, 2118 |
| ApoI | RAATTY | 8 cut(s) | 648, 1115, 1245, 1511, 1618, 2706, 2790, 3083 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 795 |
| AspS9I | GGNCC | 7 cut(s) | 91, 295, 922, 962, 1203, 1825, 3161 |
| AsuC2I | CCSGG | 1 cut(s) | 80 |
| AsuHPI | GGTGA | 6 cut(s) | 386, 1988, 2098, 2275, 3014, 3058 |
| AvaI | CYCGRG | 1 cut(s) | 223 |
| AvaII | GGWCC | 4 cut(s) | 962, 1203, 1825, 3161 |
| BaeGI | GKGCMC | 3 cut(s) | 1026, 2642, 2784 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 835, 868 |
| BamHI | GGATCC | 1 cut(s) | 3076 |
| BanI | GGYRCC | 1 cut(s) | 1428 |
| BanII | GRGCYC | 2 cut(s) | 1074, 3191 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2271, 2303 |
| BauI | CACGAG | 1 cut(s) | 2437 |
| BbsI | GAAGAC | 3 cut(s) | 12, 168, 2375 |
| Bbv12I | GWGCWC | 3 cut(s) | 1026, 1074, 2642 |
| BbvI | GCAGC | 3 cut(s) | 1929, 1961, 2105 |
| BccI | CCATC | 4 cut(s) | 701, 1342, 1740, 2676 |
| BceAI | ACGGC | 1 cut(s) | 105 |
| BciT130I | CCWGG | 9 cut(s) | 343, 539, 966, 1166, 1637, 1867, 2187, 2589, 2718 |
| BciVI | GTATCC | 1 cut(s) | 2325 |
| BcnI | CCSGG | 1 cut(s) | 80 |
| BcoDI | GTCTC | 3 cut(s) | 1476, 1669, 2675 |
| BcuI | ACTAGT | 1 cut(s) | 2468 |
| BfaI | CTAG | 6 cut(s) | 201, 1007, 1641, 2469, 3068, 3219 |
| BfmI | CTRYAG | 3 cut(s) | 1772, 1857, 1975 |
| BfrI | CTTAAG | 1 cut(s) | 2057 |
| BfuAI | ACCTGC | 1 cut(s) | 1836 |
| BfuI | GTATCC | 1 cut(s) | 2325 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1311 |
| BglII | AGATCT | 1 cut(s) | 428 |
| BisI | GCNGC | 3 cut(s) | 1943, 1975, 2119 |
| BlsI | GCNGC | 3 cut(s) | 1944, 1976, 2120 |
| BmcAI | AGTACT | 1 cut(s) | 3223 |
| Bme18I | GGWCC | 4 cut(s) | 962, 1203, 1825, 3161 |
| BmeT110I | CYCGRG | 1 cut(s) | 223 |
| BmgBI | CACGTC | 1 cut(s) | 46 |
| BmgT120I | GGNCC | 7 cut(s) | 91, 295, 922, 962, 1203, 1825, 3161 |
| BmiI | GGNNCC | 2 cut(s) | 1430, 3078 |
| BmrI | ACTGGG | 1 cut(s) | 677 |
| BmsI | GCATC | 4 cut(s) | 869, 943, 1455, 2302 |
| BmuI | ACTGGG | 1 cut(s) | 677 |
| BpiI | GAAGAC | 3 cut(s) | 12, 168, 2375 |
| BpmI | CTGGAG | 2 cut(s) | 560, 2739 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2571 |
| BpuEI | CTTGAG | 6 cut(s) | 86, 1088, 1114, 1895, 1973, 2150 |
| BpuMI | CCSGG | 1 cut(s) | 80 |
| BsaAI | YACGTR | 3 cut(s) | 549, 1702, 2255 |
| BsaBI | GATNNNNATC | 1 cut(s) | 912 |
| BsaHI | GRCGYC | 1 cut(s) | 1549 |
| BsaJI | CCNNGG | 6 cut(s) | 79, 193, 483, 573, 1164, 2550 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 533, 563 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 103, 484, 485, 2326, 3073 |
| Bse1I | ACTGG | 6 cut(s) | 38, 183, 535, 672, 1717, 2643 |
| Bse3DI | GCAATG | 1 cut(s) | 844 |
| Bse8I | GATNNNNATC | 1 cut(s) | 912 |
| BseBI | CCWGG | 9 cut(s) | 343, 539, 966, 1166, 1637, 1867, 2187, 2589, 2718 |
| BseDI | CCNNGG | 6 cut(s) | 79, 193, 483, 573, 1164, 2550 |
| BseGI | GGATG | 6 cut(s) | 8, 562, 884, 1353, 2146, 2687 |
| BseJI | GATNNNNATC | 1 cut(s) | 912 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 103, 484, 485, 2326, 3073 |
| BseMI | GCAATG | 1 cut(s) | 844 |
| BseMII | CTCAG | 7 cut(s) | 1288, 1708, 1912, 1980, 2407, 3197, 3216 |
| BseNI | ACTGG | 6 cut(s) | 38, 183, 535, 672, 1717, 2643 |
| BseRI | GAGGAG | 2 cut(s) | 89, 241 |
| BseSI | GKGCMC | 3 cut(s) | 1026, 2642, 2784 |
| BseXI | GCAGC | 3 cut(s) | 1929, 1961, 2105 |
| BseYI | CCCAGC | 1 cut(s) | 462 |
| BsgI | GTGCAG | 5 cut(s) | 87, 203, 287, 417, 1416 |
| Bsh1236I | CGCG | 1 cut(s) | 236 |
| Bsh1285I | CGRYCG | 1 cut(s) | 401 |
| BshFI | GGCC | 3 cut(s) | 92, 297, 924 |
| BshNI | GGYRCC | 1 cut(s) | 1428 |
| BsiEI | CGRYCG | 1 cut(s) | 401 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1026, 1074, 2642 |
| BsiHKCI | CYCGRG | 1 cut(s) | 223 |
| BsiSI | CCGG | 2 cut(s) | 79, 2917 |
| BslFI | GGGAC | 2 cut(s) | 502, 2913 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 103, 484, 485, 2326, 3073 |
| BsmAI | GTCTC | 3 cut(s) | 1476, 1669, 2675 |
| BsmFI | GGGAC | 2 cut(s) | 502, 2913 |
| BsnI | GGCC | 3 cut(s) | 92, 297, 924 |
| BsoBI | CYCGRG | 1 cut(s) | 223 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1026, 1074, 2642, 2784, 3191 |
| BspACI | CCGC | 3 cut(s) | 76, 236, 1831 |
| BspANI | GGCC | 3 cut(s) | 92, 297, 924 |
| BspCNI | CTCAG | 7 cut(s) | 1287, 1707, 1911, 1981, 2406, 3198, 3217 |
| BspFNI | CGCG | 1 cut(s) | 236 |
| BspHI | TCATGA | 3 cut(s) | 1252, 1461, 2947 |
| BspLI | GGNNCC | 2 cut(s) | 1430, 3078 |
| BspMAI | CTGCAG | 2 cut(s) | 1861, 1979 |
| BspMI | ACCTGC | 1 cut(s) | 1836 |
| BspQI | GCTCTTC | 2 cut(s) | 381, 1176 |
| BspT107I | GGYRCC | 1 cut(s) | 1428 |
| BspTI | CTTAAG | 1 cut(s) | 2057 |
| BsrDI | GCAATG | 1 cut(s) | 844 |
| BsrI | ACTGG | 6 cut(s) | 38, 183, 535, 672, 1717, 2643 |
| BssECI | CCNNGG | 6 cut(s) | 79, 193, 483, 573, 1164, 2550 |
| BssNI | GRCGYC | 1 cut(s) | 1549 |
| BssSI | CACGAG | 1 cut(s) | 2437 |
| BssT1I | CCWWGG | 2 cut(s) | 193, 2550 |
| Bst2BI | CACGAG | 1 cut(s) | 2437 |
| Bst2UI | CCWGG | 9 cut(s) | 343, 539, 966, 1166, 1637, 1867, 2187, 2589, 2718 |
| Bst4CI | ACNGT | 8 cut(s) | 682, 1428, 1441, 1776, 1851, 1923, 2263, 2818 |
| Bst6I | CTCTTC | 5 cut(s) | 381, 1176, 1667, 2181, 2660 |
| BstACI | GRCGYC | 1 cut(s) | 1549 |
| BstAFI | CTTAAG | 1 cut(s) | 2057 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1474 |
| BstBAI | YACGTR | 3 cut(s) | 549, 1702, 2255 |
| BstC8I | GCNNGC | 5 cut(s) | 186, 448, 589, 1086, 2922 |
| BstDSI | CCRYGG | 1 cut(s) | 573 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 101 |
| BstF5I | GGATG | 6 cut(s) | 8, 562, 884, 1353, 2146, 2687 |
| BstFNI | CGCG | 1 cut(s) | 236 |
| BstMAI | GTCTC | 3 cut(s) | 1476, 1669, 2675 |
| BstMCI | CGRYCG | 1 cut(s) | 401 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 793, 1311, 1465, 1474 |
| BstNI | CCWGG | 9 cut(s) | 343, 539, 966, 1166, 1637, 1867, 2187, 2589, 2718 |
| BstNSI | RCATGY | 4 cut(s) | 341, 1004, 1088, 2946 |
| BstSFI | CTRYAG | 3 cut(s) | 1772, 1857, 1975 |
| BstSLI | GKGCMC | 3 cut(s) | 1026, 2642, 2784 |
| BstSNI | TACGTA | 2 cut(s) | 1702, 2255 |
| BstUI | CGCG | 1 cut(s) | 236 |
| BstV1I | GCAGC | 3 cut(s) | 1929, 1961, 2105 |
| BstV2I | GAAGAC | 3 cut(s) | 12, 168, 2375 |
| BstX2I | RGATCY | 8 cut(s) | 36, 204, 403, 428, 466, 2546, 3032, 3076 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2006 |
| BstYI | RGATCY | 8 cut(s) | 36, 204, 403, 428, 466, 2546, 3032, 3076 |
| BsuI | GTATCC | 1 cut(s) | 2325 |
| BsuRI | GGCC | 3 cut(s) | 92, 297, 924 |
| BtgI | CCRYGG | 1 cut(s) | 573 |
| BtrI | CACGTC | 1 cut(s) | 46 |
| BtsCI | GGATG | 6 cut(s) | 8, 562, 884, 1353, 2146, 2687 |
| BtsI | GCAGTG | 1 cut(s) | 2494 |
| BtsIMutI | CAGTG | 5 cut(s) | 31, 528, 1710, 2494, 2931 |
| BveI | ACCTGC | 1 cut(s) | 1836 |
| Cac8I | GCNNGC | 5 cut(s) | 186, 448, 589, 1086, 2922 |
| CciI | TCATGA | 3 cut(s) | 1252, 1461, 2947 |
| Cfr13I | GGNCC | 7 cut(s) | 91, 295, 922, 962, 1203, 1825, 3161 |
| CseI | GACGC | 3 cut(s) | 380, 1402, 1538 |
| Csp6I | GTAC | 9 cut(s) | 232, 550, 890, 1004, 1650, 1703, 1847, 2252, 3222 |
| CviQI | GTAC | 9 cut(s) | 232, 550, 890, 1004, 1650, 1703, 1847, 2252, 3222 |
| DraI | TTTAAA | 3 cut(s) | 1806, 2355, 2805 |
| Eam1104I | CTCTTC | 5 cut(s) | 381, 1176, 1667, 2181, 2660 |
| EarI | CTCTTC | 5 cut(s) | 381, 1176, 1667, 2181, 2660 |
| Ecl136II | GAGCTC | 1 cut(s) | 1072 |
| Eco105I | TACGTA | 2 cut(s) | 1702, 2255 |
| Eco130I | CCWWGG | 2 cut(s) | 193, 2550 |
| Eco24I | GRGCYC | 2 cut(s) | 1074, 3191 |
| Eco32I | GATATC | 1 cut(s) | 808 |
| Eco47I | GGWCC | 4 cut(s) | 962, 1203, 1825, 3161 |
| Eco53kI | GAGCTC | 1 cut(s) | 1072 |
| Eco57I | CTGAAG | 4 cut(s) | 43, 462, 513, 2696 |
| Eco88I | CYCGRG | 1 cut(s) | 223 |
| EcoICRI | GAGCTC | 1 cut(s) | 1072 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 101 |
| EcoRI | GAATTC | 1 cut(s) | 2790 |
| EcoRII | CCWGG | 9 cut(s) | 341, 537, 964, 1164, 1635, 1865, 2185, 2587, 2716 |
| EcoRV | GATATC | 1 cut(s) | 808 |
| EcoT14I | CCWWGG | 2 cut(s) | 193, 2550 |
| EcoT22I | ATGCAT | 4 cut(s) | 937, 958, 1090, 1470 |
| EcoT38I | GRGCYC | 2 cut(s) | 1074, 3191 |
| ErhI | CCWWGG | 2 cut(s) | 193, 2550 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 780, 812, 1050, 1082, 1778, 1810 |
| FaqI | GGGAC | 2 cut(s) | 502, 2913 |
| FauI | CCCGC | 1 cut(s) | 83 |
| FauNDI | CATATG | 2 cut(s) | 918, 3124 |
| Fnu4HI | GCNGC | 3 cut(s) | 1943, 1975, 2119 |
| FokI | GGATG | 5 cut(s) | 569, 891, 1360, 2153, 2694 |
| FriOI | GRGCYC | 2 cut(s) | 1074, 3191 |
| Fsp4HI | GCNGC | 3 cut(s) | 1943, 1975, 2119 |
| FspBI | CTAG | 6 cut(s) | 201, 1007, 1641, 2469, 3068, 3219 |
| GluI | GCNGC | 3 cut(s) | 1943, 1975, 2119 |
| GsaI | CCCAGC | 1 cut(s) | 466 |
| GsuI | CTGGAG | 2 cut(s) | 560, 2739 |
| HaeIII | GGCC | 3 cut(s) | 92, 297, 924 |
| HapII | CCGG | 2 cut(s) | 79, 2917 |
| HgaI | GACGC | 3 cut(s) | 380, 1402, 1538 |
| Hin1I | GRCGYC | 1 cut(s) | 1549 |
| HincII | GTYRAC | 1 cut(s) | 1884 |
| HindII | GTYRAC | 1 cut(s) | 1884 |
| HindIII | AAGCTT | 4 cut(s) | 704, 730, 794, 1282 |
| HpaII | CCGG | 2 cut(s) | 79, 2917 |
| HphI | GGTGA | 6 cut(s) | 386, 1988, 2098, 2275, 3014, 3058 |
| Hpy166II | GTNNAC | 6 cut(s) | 520, 665, 1024, 1884, 1996, 2640 |
| Hpy8I | GTNNAC | 6 cut(s) | 520, 665, 1024, 1884, 1996, 2640 |
| Hpy99I | CGWCG | 1 cut(s) | 47 |
| HpyCH4III | ACNGT | 8 cut(s) | 682, 1428, 1441, 1776, 1851, 1923, 2263, 2818 |
| HpyCH4IV | ACGT | 6 cut(s) | 45, 548, 724, 1701, 2254, 3193 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 793, 1311, 1465, 1474 |
| HpySE526I | ACGT | 6 cut(s) | 45, 548, 724, 1701, 2254, 3193 |
| Hsp92I | GRCGYC | 1 cut(s) | 1549 |
| LguI | GCTCTTC | 2 cut(s) | 381, 1176 |
| LmnI | GCTCC | 5 cut(s) | 145, 259, 334, 1692, 2615 |
| Lsp1109I | GCAGC | 3 cut(s) | 1929, 1961, 2105 |
| LweI | GCATC | 4 cut(s) | 869, 943, 1455, 2302 |
| MaeI | CTAG | 6 cut(s) | 201, 1007, 1641, 2469, 3068, 3219 |
| MaeII | ACGT | 6 cut(s) | 45, 548, 724, 1701, 2254, 3193 |
| MaeIII | GTNAC | 8 cut(s) | 392, 605, 982, 1052, 1363, 1697, 2561, 3002 |
| MflI | RGATCY | 8 cut(s) | 36, 204, 403, 428, 466, 2546, 3032, 3076 |
| MhlI | GDGCHC | 5 cut(s) | 1026, 1074, 2642, 2784, 3191 |
| MlyI | GAGTC | 7 cut(s) | 248, 1119, 1602, 2609, 2677, 3122, 3167 |
| MmeI | TCCRAC | 4 cut(s) | 625, 1714, 1987, 2517 |
| Mph1103I | ATGCAT | 4 cut(s) | 937, 958, 1090, 1470 |
| MroXI | GAANNNNTTC | 1 cut(s) | 795 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1346 |
| MspCI | CTTAAG | 1 cut(s) | 2057 |
| MspI | CCGG | 2 cut(s) | 79, 2917 |
| MvaI | CCWGG | 9 cut(s) | 343, 539, 966, 1166, 1637, 1867, 2187, 2589, 2718 |
| MvnI | CGCG | 1 cut(s) | 236 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 793, 1311, 1465, 1474 |
| NciI | CCSGG | 1 cut(s) | 80 |
| NdeI | CATATG | 2 cut(s) | 918, 3124 |
| NlaIV | GGNNCC | 2 cut(s) | 1430, 3078 |
| NmeAIII | GCCGAG | 1 cut(s) | 508 |
| NmuCI | GTSAC | 6 cut(s) | 392, 605, 1052, 1363, 2561, 3002 |
| NsiI | ATGCAT | 4 cut(s) | 937, 958, 1090, 1470 |
| NspI | RCATGY | 4 cut(s) | 341, 1004, 1088, 2946 |
| PaeI | GCATGC | 1 cut(s) | 1088 |
| PaeR7I | CTCGAG | 1 cut(s) | 223 |
| PagI | TCATGA | 3 cut(s) | 1252, 1461, 2947 |
| PciI | ACATGT | 2 cut(s) | 1000, 2942 |
| PciSI | GCTCTTC | 2 cut(s) | 381, 1176 |
| PdmI | GAANNNNTTC | 1 cut(s) | 795 |
| PfeI | GAWTC | 8 cut(s) | 778, 1061, 1261, 1764, 1862, 2062, 2162, 2623 |
| PfoI | TCCNGGA | 2 cut(s) | 964, 2716 |
| PkrI | GCNGC | 3 cut(s) | 1944, 1976, 2120 |
| Ple19I | CGATCG | 1 cut(s) | 401 |
| PleI | GAGTC | 7 cut(s) | 247, 1119, 1602, 2608, 2676, 3121, 3167 |
| PpsI | GAGTC | 7 cut(s) | 247, 1119, 1602, 2608, 2676, 3121, 3167 |
| Ppu21I | YACGTR | 3 cut(s) | 549, 1702, 2255 |
| PscI | ACATGT | 2 cut(s) | 1000, 2942 |
| Psp124BI | GAGCTC | 1 cut(s) | 1074 |
| Psp6I | CCWGG | 9 cut(s) | 341, 537, 964, 1164, 1635, 1865, 2185, 2587, 2716 |
| PspFI | CCCAGC | 1 cut(s) | 462 |
| PspGI | CCWGG | 9 cut(s) | 341, 537, 964, 1164, 1635, 1865, 2185, 2587, 2716 |
| PspN4I | GGNNCC | 2 cut(s) | 1430, 3078 |
| PspPI | GGNCC | 7 cut(s) | 91, 295, 922, 962, 1203, 1825, 3161 |
| PstI | CTGCAG | 2 cut(s) | 1861, 1979 |
| PsuI | RGATCY | 8 cut(s) | 36, 204, 403, 428, 466, 2546, 3032, 3076 |
| PvuI | CGATCG | 1 cut(s) | 401 |
| RsaI | GTAC | 9 cut(s) | 233, 551, 891, 1005, 1651, 1704, 1848, 2253, 3223 |
| RsaNI | GTAC | 9 cut(s) | 232, 550, 890, 1004, 1650, 1703, 1847, 2252, 3222 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1346 |
| SacI | GAGCTC | 1 cut(s) | 1074 |
| SapI | GCTCTTC | 2 cut(s) | 381, 1176 |
| SatI | GCNGC | 3 cut(s) | 1943, 1975, 2119 |
| Sau96I | GGNCC | 7 cut(s) | 91, 295, 922, 962, 1203, 1825, 3161 |
| ScaI | AGTACT | 1 cut(s) | 3223 |
| SchI | GAGTC | 7 cut(s) | 248, 1119, 1602, 2609, 2677, 3122, 3167 |
| SduI | GDGCHC | 5 cut(s) | 1026, 1074, 2642, 2784, 3191 |
| SfaNI | GCATC | 4 cut(s) | 869, 943, 1455, 2302 |
| SfcI | CTRYAG | 3 cut(s) | 1772, 1857, 1975 |
| Sfr274I | CTCGAG | 1 cut(s) | 223 |
| SinI | GGWCC | 4 cut(s) | 962, 1203, 1825, 3161 |
| SlaI | CTCGAG | 1 cut(s) | 223 |
| SmiI | ATTTAAAT | 1 cut(s) | 2355 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1346 |
| SmlI | CTYRAG | 8 cut(s) | 101, 223, 1067, 1129, 1874, 1952, 2057, 2129 |
| SmoI | CTYRAG | 8 cut(s) | 101, 223, 1067, 1129, 1874, 1952, 2057, 2129 |
| SnaBI | TACGTA | 2 cut(s) | 1702, 2255 |
| SpeI | ACTAGT | 1 cut(s) | 2468 |
| SphI | GCATGC | 1 cut(s) | 1088 |
| SsiI | CCGC | 3 cut(s) | 76, 236, 1831 |
| SspI | AATATT | 1 cut(s) | 1374 |
| SspMI | CTAG | 6 cut(s) | 201, 1007, 1641, 2469, 3068, 3219 |
| SstI | GAGCTC | 1 cut(s) | 1074 |
| StyI | CCWWGG | 2 cut(s) | 193, 2550 |
| SwaI | ATTTAAAT | 1 cut(s) | 2355 |
| TaaI | ACNGT | 8 cut(s) | 682, 1428, 1441, 1776, 1851, 1923, 2263, 2818 |
| TaiI | ACGT | 6 cut(s) | 48, 551, 727, 1704, 2257, 3196 |
| TaqI | TCGA | 5 cut(s) | 224, 1287, 1480, 2275, 2844 |
| TatI | WGTACW | 3 cut(s) | 1003, 1649, 3221 |
| TfiI | GAWTC | 8 cut(s) | 778, 1061, 1261, 1764, 1862, 2062, 2162, 2623 |
| TscAI | CASTG | 5 cut(s) | 38, 535, 1717, 2501, 2938 |
| TseFI | GTSAC | 6 cut(s) | 392, 605, 1052, 1363, 2561, 3002 |
| TseI | GCWGC | 3 cut(s) | 1942, 1974, 2118 |
| Tsp45I | GTSAC | 6 cut(s) | 392, 605, 1052, 1363, 2561, 3002 |
| TspGWI | ACGGA | 1 cut(s) | 1993 |
| TspRI | CASTG | 5 cut(s) | 38, 535, 1717, 2501, 2938 |
| Vha464I | CTTAAG | 1 cut(s) | 2057 |
| VneI | GTGCAC | 2 cut(s) | 1022, 2638 |
| VpaK11BI | GGWCC | 4 cut(s) | 962, 1203, 1825, 3161 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 101 |
| XapI | RAATTY | 8 cut(s) | 648, 1115, 1245, 1511, 1618, 2706, 2790, 3083 |
| XceI | RCATGY | 4 cut(s) | 341, 1004, 1088, 2946 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 956, 2076 |
| XhoI | CTCGAG | 1 cut(s) | 223 |
| XmnI | GAANNNNTTC | 1 cut(s) | 795 |
| XspI | CTAG | 6 cut(s) | 201, 1007, 1641, 2469, 3068, 3219 |
| ZrmI | AGTACT | 1 cut(s) | 3223 |
| Zsp2I | ATGCAT | 4 cut(s) | 937, 958, 1090, 1470 |