FvH4_3g45380

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000055
Physical Location & Seq
Reverse (-)
37654866 .. 37657617
2752 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g45380.t1

Sequence Viewer

Length: 2322 bp
ATGAAGCCGTCGTCGTCCTCGTCGCCGCCCCCATCAATTTCCCCTTCCTGGAGACACTGGAAGTACGATGTGTTCTTGAGCTTCAGAGGTGAAGACACACGCAGGACCTTCACGGACCACCTCTACGCGGCACTAGAACGTGCGGGAGTCTGGACGTTTAGGGATGCGGAGGGACTAAGGAGAGGTGAATACATAGCTGAAACATTAATGTGTGTAATCCTAGAGTGTAGGATCTCTCTCATTGTCTTCTCAGAGAATTACGCGGATTCACATTGGTGTCTCGAGGAGCTGGTGCAGATCATGGACTGTAGAAGAACACAAAAGCAACTGGTTTTCCCCATATTCTATCACGTTGTTCCTTCACATGTCAGGAAGCAGGTAGGTAGTTTTGGCAAGGCATTTGAGAAACATGAAGCTAAACTATTAACTGAAGGTAGAGATAAGATACCCAGGTGGAGAGCTGTTCTCAGAGAAGCTGCAAGTTTGGCTGGCTTCGATATTGCTGATAGGCATGAAGCAGAGTTTATTAACAGCATTGTTGACGAGATATGCAGACGGCTAACCAACACATACTTGAACTTAGCTGTCTACCCAGTTGGAATAGATTCTCGTGTTGAAGATATCAGTAATTCTTTGTGTGTTGGAGTAGGTGATGATGTTCGCATGGTTGGAATTTGGGGTATGGGTGGATCCGGCAAAACAACACTTGCCAAAGCCATCTATAACAAATTTTATCATCACTTTGACAGTAAAAGTTTCCTAGCGGATGTTAGGGAGACTGCAAAGGATTCACGTGGTAAGATTTATCTGCAAGAAAGACTGCTTTCTGATGTCCTAACACCAACCAAGATAGAGGTAGGTCATGTTGACAAAGGGATCAACGTGATAAGAGAACGACTTGGAAAAAAAAAAGTACTCGTCATTGTCGACGATGTTGATCATGAGGACCAATTGCATGCATTGGCTATAAGCCGTGAATCTTTTGGTCTGGGAAGTAGAATTATTATAACAACAAGAGATGAACATATACTAGAACTTCTGAAAGTGGATACAGTACATCTAACCCGAGAAATGAATGAAGAAGAAGGTCTTGAGCTCTTCAGTCAGCATGCCTTTGGAAAGCATTCTCCTGATGAAGACTATATTGAACTCTCAAGAAGGGTGGTTATGTACTGTGGAGGTTTACCACTGGCTCTTGAAGTTTTAGGGTCTTTTCTGTTTAAAAAGAGTGCAAGAGAATGGGAAAGCACACTGAAGAAATTGGAAAACGTTCCTGATGTCAGAATTCAGTCAAAGCTCAGAATAAGCTTTGATGCAATTGATGAGAGCCAGAAGAACATATTCCTCCATATATCTTGTTACTTCATTGGAATGGACAAGAATTATGTCATGGAAATACTAAAAGGCTGTGGTTTTTATCCAGAAACAGATATCAGTGTCCTGCAGCAACGTTGCCTTGTAACTGTCAGTGAGAAAAACAAGCTCATGATGCATGATCTGCTTCGAGACATGGGCAGAGAAGTTGTTCGTGAAGAATCCCCTAACAGCCCTGAAAGACGCAGTAGATTGTGGCGTCGGGAAGATGTAATAGATGTATTGACAGATGAATCTGGAACTGAAGTGACTGAAGGACTCTCTCTAAATTTGCAAAGATCTGAGTCATCTGACAACATGTGTACTGTCAGTACAAAAGCGTTTAGAAACATGAAGAGGCTGAAATTGCTCCAACTCAACTATTTGCATCTCAAGGGAGACTACGACAACTTCCCCAAAAAGTTGAGCTGGCTCTGCTTGCGAGGATACTCTGCCCAGGTCATACCTATTGGGTTTCTTAATGAGAGAAAACTGGTTTCTATCGACCTGCGGTACAGCAATCTCGAACTTTTTTGGCATACCAGGCGCCTTGTGAAATTGGTGATACTTAATCTCAGTCATTCACGTTACCTAAGACAATCATCAAACTTTTCACAAGTCCCATTTCTACAGTATCTGGTCCTTAAAGACTGTGTGAGATTGTCAAAAATTGACGAGTCCATTGGAAGTCTTTCTGGACTTGCATTGCTAAATCTGAAAGGTTGCACGATGCTCAAGAACCTTCCGGAGGATTTCTATAAGTTGCGTTGTGTTAGGACTCTTGTTCTCTCTGGCTGTTCGAGATTTAAGCATTTGAGCACGAATATAGGAAATATGACTCGTTTGGAAACTCTTCTTATAAGTGGCACAGCTATAAGTGAAGTACCATCCACAGTAGATAACTTGAAATGGCTGAAATTTTCATCTCGACATGGCCTGAGTGGACTACAACGTCATTTCCATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

774

Amino Acids

88.74

Weight (kDa)

8.59

Isoelectric Point (pI)

48.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 21 - 191 1.9e-48 TIR domain
TIR_2 PF13676 24 - 120 9e-13 TIR domain
NB-ARC PF00931 203 - 374 1.8e-23 NB-ARC domain
WHD_ROQ1 PF23282 442 - 513 4.1e-18 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 651 - 754 1.8e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G36930 AT5G36930 AT5G36930 AT5G36930
fragaria_vesca FvH4_3g45361 FvH4_3g45380 FvH4_5g21061 FvH4_5g21062 FvH4_5g21063 FvH4_5g32050 FvH4_5g32970 FvH4_5g32990 FvH4_5g34190 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34210 FvH4_5g34211 FvH4_5g34240 FvH4_5g34250
malus_domestica MD00G1011700.v1.1 MD00G1026100.v1.1 MD00G1026500.v1.1 MD00G1027000.v1.1 MD00G1027100.v1.1 MD00G1027700.v1.1 MD00G1027800.v1.1 MD00G1028000.v1.1 MD00G1220000.v1.1 MD02G1024400.v1.1 MD02G1024800.v1.1 MD02G1026000.v1.1 MD02G1026100.v1.1 MD02G1031800.v1.1 MD02G1038500.v1.1 MD02G1038700.v1.1 MD02G1039200.v1.1 MD02G1040600.v1.1 MD02G1040900.v1.1 MD02G1041200.v1.1 MD02G1041300.v1.1 MD02G1041700.v1.1 MD02G1042000.v1.1 MD02G1043800.v1.1 MD02G1043900.v1.1 MD02G1044300.v1.1 MD02G1045200.v1.1 MD02G1045300.v1.1 MD02G1051200.v1.1 MD02G1052200.v1.1 MD02G1052800.v1.1 MD02G1053100.v1.1 MD02G1053600.v1.1 MD02G1055500.v1.1 MD02G1063300.v1.1 MD02G1063400.v1.1 MD02G1063800.v1.1 MD02G1306500.v1.1 MD02G1306600.v1.1 MD02G1306700.v1.1 MD02G1306900.v1.1 MD02G1307200.v1.1 MD04G1011700.v1.1 MD05G1315400.v1.1 MD05G1316000.v1.1 MD05G1316700.v1.1 MD05G1317000.v1.1 MD05G1317300.v1.1 MD05G1317600.v1.1 MD05G1317700.v1.1 MD07G1102800.v1.1 MD07G1238200.v1.1 MD08G1175900.v1.1 MD08G1203600.v1.1 MD09G1024200.v1.1 MD09G1039600.v1.1 MD09G1044800.v1.1 MD09G1045100.v1.1 MD10G1038700.v1.1 MD10G1039000.v1.1 MD10G1039200.v1.1 MD10G1040000.v1.1 MD10G1040200.v1.1 MD10G1040600.v1.1 MD10G1040800.v1.1 MD10G1297300.v1.1 MD12G1247500.v1.1 MD12G1247900.v1.1 MD12G1248300.v1.1 MD12G1248800.v1.1 MD15G1103700.v1.1 MD15G1103800.v1.1 MD15G1104000.v1.1 MD15G1179600.v1.1 MD15G1182500.v1.1 MD16G1068200.v1.1 MD16G1068300.v1.1 MD17G1024600.v1.1 MD17G1024700.v1.1 MD17G1025000.v1.1 MD17G1025900.v1.1
prunus_persica Prupe.1G539800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G550800_v2.0.a1 Prupe.1G557100_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557200_v2.0.a1 Prupe.1G557300_v2.0.a1
pyrus_communis pycom02g02080 pycom02g02090 pycom02g02110 pycom02g03220 pycom02g03260 pycom02g03370 pycom02g03390 pycom02g03410 pycom02g03420 pycom02g03450 pycom02g03500 pycom02g03730 pycom02g03770 pycom02g04400 pycom02g04410 pycom02g04430 pycom02g04450 pycom02g04460 pycom02g04490 pycom02g05200 pycom02g25710 pycom02g25750 pycom02g25790 pycom02g25810 pycom02g25830 pycom04g00920 pycom04g00930 pycom04g00940 pycom05g29300 pycom05g29310 pycom05g29380 pycom05g29410 pycom07g06310 pycom07g21420 pycom08g15070 pycom08g17540 pycom08g17560 pycom08g17570 pycom10g02670 pycom10g02680 pycom10g02700 pycom10g02770 pycom10g02790 pycom10g02800 pycom10g02810 pycom10g25020 pycom10g25030 pycom10g25050 pycom10g25080 pycom111g01990 pycom111g02000 pycom111g02030 pycom111g02040 pycom111g02050 pycom111g02060 pycom12g22710 pycom12g22720 pycom12g22730 pycom12g22740 pycom12g22750 pycom12g22770 pycom12g22780 pycom12g22790 pycom12g22800 pycom12g22810 pycom12g22830 pycom12g22840 pycom12g22860 pycom15g09440 pycom15g09480 pycom15g16120 pycom15g32380 pycom16g05970 pycom17g02100
rosa_chinensis RchiOBHm_Chr2g0144661 RchiOBHm_Chr4g0407491 RchiOBHm_Chr4g0407501 RchiOBHm_Chr4g0412381 RchiOBHm_Chr7g0208191 RchiOBHm_Chr7g0208201 RchiOBHm_Chr7g0208211 RchiOBHm_Chr7g0208221 RchiOBHm_Chr7g0228071 RchiOBHm_Chr7g0228121 RchiOBHm_Chr7g0230971 RchiOBHm_Chr7g0230981 RchiOBHm_Chr7g0233901 RchiOBHm_Chr7g0233951 RchiOBHm_Chr7g0233961 RchiOBHm_Chr7g0233991 RchiOBHm_Chr7g0234021 RchiOBHm_Chr7g0234151 RchiOBHm_Chr7g0234161 RchiOBHm_Chr7g0234241 RchiOBHm_Chr7g0234501 RchiOBHm_Chr7g0234641 RchiOBHm_Chr7g0234771 RchiOBHm_Chr7g0234781 RchiOBHm_Chr7g0234991 RchiOBHm_Chr7g0241291 RchiOBHm_Chr7g0241301
rosa_laevigata RLG00000001186 RLG00000001187 RLG00000001212 RLG00000001226 RLG00000001233 RLG00000001590 RLG00000003242 RLG00000003243 RLG00000003249 RLG00000008688 RLG00000008690
rosa_multiflora Rmu_co7966574.1_g000001 Rmu_co8120830.1_g000001 Rmu_co8142226.1_g000001 Rmu_co8293083.1_g000001 Rmu_co8351227.1_g000001 Rmu_co8380159.1_g000001 Rmu_co8456505.1_g000001 Rmu_sc0000676.1_g000025 Rmu_sc0000706.1_g000018 Rmu_sc0000706.1_g000040 Rmu_sc0000740.1_g000029 Rmu_sc0000740.1_g000032 Rmu_sc0000740.1_g000037 Rmu_sc0000740.1_g000040 Rmu_sc0000762.1_g000003 Rmu_sc0000762.1_g000019 Rmu_sc0000762.1_g000034 Rmu_sc0000762.1_g000069 Rmu_sc0000892.1_g000001 Rmu_sc0000945.1_g000040 Rmu_sc0001913.1_g000037 Rmu_sc0001913.1_g000041 Rmu_sc0001913.1_g000049 Rmu_sc0002775.1_g000017 Rmu_sc0002775.1_g000018 Rmu_sc0002775.1_g000020 Rmu_sc0002775.1_g000021 Rmu_sc0002775.1_g000022 Rmu_sc0002775.1_g000025 Rmu_sc0002775.1_g000026 Rmu_sc0002775.1_g000028 Rmu_sc0002775.1_g000030 Rmu_sc0004858.1_g000002 Rmu_sc0004864.1_g000022 Rmu_sc0005038.1_g000023 Rmu_sc0005840.1_g000014 Rmu_sc0006724.1_g000003 Rmu_sc0006824.1_g000005 Rmu_sc0007869.1_g000003 Rmu_sc0007869.1_g000005 Rmu_sc0007869.1_g000008 Rmu_sc0008646.1_g000007 Rmu_sc0009637.1_g000009 Rmu_sc0010500.1_g000002 Rmu_sc0010500.1_g000012 Rmu_sc0012403.1_g000025 Rmu_sc0013768.1_g000025 Rmu_sc0015625.1_g000001 Rmu_sc0019715.1_g000001 Rmu_sc0021133.1_g000002 Rmu_sc0021904.1_g000001 Rmu_sc0021904.1_g000003 Rmu_sc0021904.1_g000004 Rmu_sc0022054.1_g000001 Rmu_sc0026025.1_g000001 Rmu_sc0036828.1_g000002 Rmu_sc0041808.1_g000001 Rmu_ssc0000012.1_g000001
rosa_roxburghii Rroxscaffold_3G00226370 Rroxscaffold_3G00226860 Rroxscaffold_3G00226900 Rroxscaffold_3G00226930 Rroxscaffold_3G00226940 Rroxscaffold_3G00226970 Rroxscaffold_3G00226980 Rroxscaffold_3G00231530 Rroxscaffold_3G00237090 Rroxscaffold_3G00250760 Rroxscaffold_3G00250800
rosa_rugosa Rorug04G0082300 Rorug07G0101800 Rorug07G0102000 Rorug07G0102100 Rorug07G0221200 Rorug07G0245700 Rorug07G0245700 Rorug07G0245700 Rorug07G0263900 Rorug07G0264000 Rorug07G0264000 Rorug07G0264500 Rorug07G0282900 Rorug07G0282900 Rorug07G0283100 Rorug07G0283200.1 Rorug07G0283300 Rorug07G0283900 Rorug07G0284000 Rorug07G0284100 Rorug07G0284300 Rorug07G0284400 Rorug07G0284500 Rorug07G0285000 Rorug07G0285200 Rorug07G0285300 Rorug07G0285500 Rorug07G0286800 Rorug07G0286900 Rorug07G0287100 Rorug07G0287200
rosa_samantha Rh7AG236100 Rh7AG236200 Rh7AG236300 Rh7AG440000 Rh7AG440100 Rh7BG411900 Rh7BG412000 Rh7BG412600 Rh7CG251300 Rh7CG417700 Rh7CG460100 Rh7DG242100 Rh7DG242200 Rh7DG242300 Rh7DG429300
rosa_wichuraiana Rw0G005070 Rw0G010780 Rw0G012530 Rw7G020110 Rw7G020160 Rw7G020170 Rw7G033210 Rw7G033230 Rw7G033250 Rw7G034540 Rw7G035150 Rw7G036190 Rw7G036210 Rw7G036260 Rw7G036270 Rw7G036290 Rw7G036300 Rw7G036310 Rw7G036350 Rw7G036360 Rw7G036440 Rw7G036510 Rw7G036530 Rw7G036570 Rw7G036590 Rw7G036730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1007, 2213
AasI GACNNNNNNGTC 1 cut(s) 2304
Acc36I ACCTGC 2 cut(s) 367, 1869
AccB1I GGYRCC 1 cut(s) 1899
AccI GTMKAC 2 cut(s) 588, 927
AccII CGCG 2 cut(s) 128, 263
AccIII TCCGGA 1 cut(s) 2098
AciI CCGC 7 cut(s) 26, 128, 143, 167, 263, 764, 1864
AclI AACGTT 2 cut(s) 1269, 1450
AclWI GGATC 4 cut(s) 239, 684, 697, 884
AcsI RAATTY 5 cut(s) 672, 728, 1284, 1642, 2270
AcuI CTGAAG 6 cut(s) 67, 450, 1084, 1274, 1638, 1647
AcvI CACGTG 1 cut(s) 794
AcyI GRCGYC 2 cut(s) 1573, 1900
AfaI GTAC 8 cut(s) 65, 915, 1056, 1172, 1678, 1687, 1868, 2238
AfiI CCNNNNNNNGG 3 cut(s) 48, 127, 2101
AflIII ACRYGT 2 cut(s) 364, 1671
AgsI TTSAA 5 cut(s) 577, 617, 1148, 1199, 2260
AjnI CCWGG 4 cut(s) 47, 449, 1809, 1895
AleI CACNNNNGTG 1 cut(s) 274
Alw21I GWGCWC 2 cut(s) 1098, 2174
Alw26I GTCTC 5 cut(s) 46, 284, 770, 1500, 1746
AlwI GGATC 4 cut(s) 239, 684, 697, 884
AlwNI CAGNNNCTG 1 cut(s) 1990
Ama87I CYCGRG 2 cut(s) 281, 1065
Aor13HI TCCGGA 1 cut(s) 2098
AoxI GGCC 1 cut(s) 2287
ApeKI GCWGC 2 cut(s) 476, 1444
ApoI RAATTY 5 cut(s) 672, 728, 1284, 1642, 2270
AseI ATTAAT 1 cut(s) 206
Asp700I GAANNNNTTC 7 cut(s) 604, 1123, 1269, 1340, 1524, 2044, 2205
AspLEI GCGC 1 cut(s) 1902
AspS9I GGNCC 4 cut(s) 105, 115, 946, 1993
AsuHPI GGTGA 4 cut(s) 101, 197, 662, 1927
AvaI CYCGRG 2 cut(s) 281, 1065
AvaII GGWCC 4 cut(s) 105, 115, 946, 1993
BaeI ACNNNNGTAYC 2 cut(s) 437, 470
BamHI GGATCC 1 cut(s) 689
BanI GGYRCC 1 cut(s) 1899
BanII GRGCYC 1 cut(s) 1098
BauI CACGAG 1 cut(s) 609
BbrPI CACGTG 1 cut(s) 794
BbsI GAAGAC 3 cut(s) 99, 238, 1143
Bbv12I GWGCWC 2 cut(s) 1098, 2174
BbvI GCAGC 2 cut(s) 463, 1456
BccI CCATC 3 cut(s) 40, 725, 2248
BceAI ACGGC 2 cut(s) 572, 957
BciT130I CCWGG 4 cut(s) 49, 451, 1811, 1897
BciVI GTATCC 2 cut(s) 1042, 1793
BclI TGATCA 1 cut(s) 937
BcoDI GTCTC 5 cut(s) 46, 284, 770, 1500, 1746
BfaI CTAG 4 cut(s) 134, 221, 761, 1031
BfmI CTRYAG 3 cut(s) 307, 1442, 1982
BfoI RGCGCY 1 cut(s) 1903
BfuAI ACCTGC 2 cut(s) 367, 1869
BfuI GTATCC 2 cut(s) 1042, 1793
BglII AGATCT 1 cut(s) 1652
BisI GCNGC 4 cut(s) 26, 129, 477, 1445
BlsI GCNGC 4 cut(s) 27, 130, 478, 1446
BmcAI AGTACT 1 cut(s) 915
Bme1390I CCNGG 4 cut(s) 49, 451, 1811, 1897
Bme18I GGWCC 4 cut(s) 105, 115, 946, 1993
BmeT110I CYCGRG 2 cut(s) 281, 1065
BmgT120I GGNCC 4 cut(s) 105, 115, 946, 1993
BmiI GGNNCC 2 cut(s) 691, 1901
BmrFI CCNGG 4 cut(s) 49, 451, 1811, 1897
BmrI ACTGGG 1 cut(s) 587
BmsI GCATC 5 cut(s) 154, 1303, 1479, 1750, 2073
BmuI ACTGGG 1 cut(s) 587
BpiI GAAGAC 3 cut(s) 99, 238, 1143
BplI GAGNNNNNCTC 2 cut(s) 450, 482
BpmI CTGGAG 1 cut(s) 70
BpuEI CTTGAG 5 cut(s) 97, 1112, 1138, 1730, 2072
BsaAI YACGTR 1 cut(s) 794
BsaBI GATNNNNATC 1 cut(s) 936
BsaHI GRCGYC 2 cut(s) 1573, 1900
BsaJI CCNNGG 2 cut(s) 449, 1809
BsaWI WCCGGW 1 cut(s) 2098
Bsc4I CCNNNNNNNGG 3 cut(s) 48, 127, 2101
Bse1I ACTGG 5 cut(s) 62, 333, 593, 1194, 1851
Bse3DI GCAATG 1 cut(s) 2057
Bse8I GATNNNNATC 1 cut(s) 936
BseAI TCCGGA 1 cut(s) 2098
BseBI CCWGG 4 cut(s) 49, 451, 1811, 1897
BseDI CCNNGG 2 cut(s) 449, 1809
BseGI GGATG 3 cut(s) 169, 772, 2240
BseJI GATNNNNATC 1 cut(s) 936
BseLI CCNNNNNNNGG 3 cut(s) 48, 127, 2101
BseMI GCAATG 1 cut(s) 2057
BseMII CTCAG 6 cut(s) 264, 481, 1312, 1647, 1942, 2282
BseNI ACTGG 5 cut(s) 62, 333, 593, 1194, 1851
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 2 cut(s) 463, 1456
BsgI GTGCAG 1 cut(s) 314
Bsh1236I CGCG 2 cut(s) 128, 263
BshFI GGCC 1 cut(s) 2289
BshNI GGYRCC 1 cut(s) 1899
BsiHKAI GWGCWC 2 cut(s) 1098, 2174
BsiHKCI CYCGRG 2 cut(s) 281, 1065
BsiSI CCGG 2 cut(s) 693, 2099
BslFI GGGAC 2 cut(s) 186, 1958
BslI CCNNNNNNNGG 3 cut(s) 48, 127, 2101
BsmAI GTCTC 5 cut(s) 46, 284, 770, 1500, 1746
BsmFI GGGAC 2 cut(s) 186, 1958
BsmI GAATGC 1 cut(s) 1123
BsnI GGCC 1 cut(s) 2289
BsoBI CYCGRG 2 cut(s) 281, 1065
Bsp1286I GDGCHC 2 cut(s) 1098, 2174
Bsp13I TCCGGA 1 cut(s) 2098
Bsp143I GATC 7 cut(s) 231, 297, 689, 876, 937, 1495, 1652
BspACI CCGC 7 cut(s) 26, 128, 143, 167, 263, 764, 1864
BspANI GGCC 1 cut(s) 2289
BspCNI CTCAG 6 cut(s) 263, 480, 1311, 1648, 1941, 2283
BspEI TCCGGA 1 cut(s) 2098
BspFNI CGCG 2 cut(s) 128, 263
BspHI TCATGA 2 cut(s) 940, 1485
BspLI GGNNCC 2 cut(s) 691, 1901
BspMAI CTGCAG 1 cut(s) 1446
BspMI ACCTGC 2 cut(s) 367, 1869
BspPI GGATC 4 cut(s) 239, 684, 697, 884
BspQI GCTCTTC 1 cut(s) 1103
BspT107I GGYRCC 1 cut(s) 1899
BsrDI GCAATG 1 cut(s) 2057
BsrI ACTGG 5 cut(s) 62, 333, 593, 1194, 1851
BssECI CCNNGG 2 cut(s) 449, 1809
BssMI GATC 7 cut(s) 231, 297, 689, 876, 937, 1495, 1652
BssNI GRCGYC 2 cut(s) 1573, 1900
BssSI CACGAG 1 cut(s) 609
Bst2BI CACGAG 1 cut(s) 609
Bst2UI CCWGG 4 cut(s) 49, 451, 1811, 1897
Bst4CI ACNGT 9 cut(s) 308, 749, 1054, 1175, 1465, 1681, 1986, 2006, 2248
Bst6I CTCTTC 3 cut(s) 1103, 1703, 2211
BstACI GRCGYC 2 cut(s) 1573, 1900
BstAPI GCANNNNNTGC 1 cut(s) 1498
BstBAI YACGTR 1 cut(s) 794
BstC8I GCNNGC 5 cut(s) 490, 957, 1110, 1784, 1793
BstDEI CTNAG 9 cut(s) 176, 250, 467, 580, 1298, 1656, 1928, 1946, 2291
BstENI CCTNNNNNAGG 1 cut(s) 2099
BstF5I GGATG 3 cut(s) 169, 772, 2240
BstFNI CGCG 2 cut(s) 128, 263
BstH2I RGCGCY 1 cut(s) 1903
BstHHI GCGC 1 cut(s) 1902
BstKTI GATC 7 cut(s) 234, 300, 692, 879, 940, 1498, 1655
BstMAI GTCTC 5 cut(s) 46, 284, 770, 1500, 1746
BstMBI GATC 7 cut(s) 231, 297, 689, 876, 937, 1495, 1652
BstMWI GCNNNNNNNGC 7 cut(s) 485, 1489, 1498, 1720, 1788, 1792, 1897
BstNI CCWGG 4 cut(s) 49, 451, 1811, 1897
BstNSI RCATGY 4 cut(s) 368, 959, 1112, 1675
BstSCI CCNGG 4 cut(s) 47, 449, 1809, 1895
BstSFI CTRYAG 3 cut(s) 307, 1442, 1982
BstUI CGCG 2 cut(s) 128, 263
BstV1I GCAGC 2 cut(s) 463, 1456
BstV2I GAAGAC 3 cut(s) 99, 238, 1143
BstX2I RGATCY 3 cut(s) 231, 689, 1652
BstYI RGATCY 3 cut(s) 231, 689, 1652
BsuI GTATCC 2 cut(s) 1042, 1793
BsuRI GGCC 1 cut(s) 2289
BtsCI GGATG 3 cut(s) 169, 772, 2240
BtsIMutI CAGTG 5 cut(s) 55, 1187, 1250, 1441, 1474
BveI ACCTGC 2 cut(s) 367, 1869
Cac8I GCNNGC 5 cut(s) 490, 957, 1110, 1784, 1793
CaiI CAGNNNCTG 1 cut(s) 1990
CciI TCATGA 2 cut(s) 940, 1485
CfoI GCGC 1 cut(s) 1902
Cfr13I GGNCC 4 cut(s) 105, 115, 946, 1993
CseI GACGC 2 cut(s) 1562, 1566
Csp6I GTAC 8 cut(s) 64, 914, 1055, 1171, 1677, 1686, 1867, 2237
CspCI CAANNNNNGTGG 2 cut(s) 1143, 1178
CviQI GTAC 8 cut(s) 64, 914, 1055, 1171, 1677, 1686, 1867, 2237
DdeI CTNAG 9 cut(s) 176, 250, 467, 580, 1298, 1656, 1928, 1946, 2291
DinI GGCGCC 1 cut(s) 1901
DpnI GATC 7 cut(s) 233, 299, 691, 878, 939, 1497, 1654
DpnII GATC 7 cut(s) 231, 297, 689, 876, 937, 1495, 1652
DraI TTTAAA 1 cut(s) 1222
DrdI GACNNNNNNGTC 1 cut(s) 2304
DseDI GACNNNNNNGTC 1 cut(s) 2304
Eam1104I CTCTTC 3 cut(s) 1103, 1703, 2211
EarI CTCTTC 3 cut(s) 1103, 1703, 2211
Ecl136II GAGCTC 1 cut(s) 1096
Eco24I GRGCYC 1 cut(s) 1098
Eco32I GATATC 2 cut(s) 622, 1432
Eco47I GGWCC 4 cut(s) 105, 115, 946, 1993
Eco53kI GAGCTC 1 cut(s) 1096
Eco57I CTGAAG 6 cut(s) 67, 450, 1084, 1274, 1638, 1647
Eco72I CACGTG 1 cut(s) 794
Eco88I CYCGRG 2 cut(s) 281, 1065
EcoICRI GAGCTC 1 cut(s) 1096
EcoNI CCTNNNNNAGG 1 cut(s) 2099
EcoO109I RGGNCCY 1 cut(s) 105
EcoRI GAATTC 1 cut(s) 1284
EcoRII CCWGG 4 cut(s) 47, 449, 1809, 1895
EcoRV GATATC 2 cut(s) 622, 1432
EcoT22I ATGCAT 3 cut(s) 961, 1494, 2320
EcoT38I GRGCYC 1 cut(s) 1098
EgeI GGCGCC 1 cut(s) 1901
EheI GGCGCC 1 cut(s) 1901
FalI AAGNNNNNCTT 2 cut(s) 1074, 1106
FaqI GGGAC 2 cut(s) 186, 1958
FauI CCCGC 1 cut(s) 136
FbaI TGATCA 1 cut(s) 937
FblI GTMKAC 2 cut(s) 588, 927
Fnu4HI GCNGC 4 cut(s) 26, 129, 477, 1445
FokI GGATG 3 cut(s) 176, 779, 2227
FriOI GRGCYC 1 cut(s) 1098
Fsp4HI GCNGC 4 cut(s) 26, 129, 477, 1445
FspBI CTAG 4 cut(s) 134, 221, 761, 1031
GlaI GCGC 1 cut(s) 1901
GluI GCNGC 4 cut(s) 26, 129, 477, 1445
GsuI CTGGAG 1 cut(s) 70
HaeII RGCGCY 1 cut(s) 1903
HaeIII GGCC 1 cut(s) 2289
HapII CCGG 2 cut(s) 693, 2099
HgaI GACGC 2 cut(s) 1562, 1566
HhaI GCGC 1 cut(s) 1902
Hin1I GRCGYC 2 cut(s) 1573, 1900
Hin6I GCGC 1 cut(s) 1900
HinP1I GCGC 1 cut(s) 1900
HincII GTYRAC 3 cut(s) 541, 868, 928
HindII GTYRAC 3 cut(s) 541, 868, 928
HindIII AAGCTT 1 cut(s) 1306
HpaII CCGG 2 cut(s) 693, 2099
HphI GGTGA 4 cut(s) 101, 197, 662, 1927
Hpy166II GTNNAC 7 cut(s) 541, 589, 868, 928, 1184, 1677, 2297
Hpy8I GTNNAC 7 cut(s) 541, 589, 868, 928, 1184, 1677, 2297
Hpy99I CGWCG 5 cut(s) 13, 16, 25, 932, 1578
HpyAV CCTTC 8 cut(s) 54, 118, 369, 425, 1079, 1152, 1622, 2105
HpyCH4III ACNGT 9 cut(s) 308, 749, 1054, 1175, 1465, 1681, 1986, 2006, 2248
HpyCH4IV ACGT 9 cut(s) 139, 155, 351, 793, 882, 1269, 1450, 1939, 2305
HpyF10VI GCNNNNNNNGC 7 cut(s) 485, 1489, 1498, 1720, 1788, 1792, 1897
HpyF3I CTNAG 9 cut(s) 176, 250, 467, 580, 1298, 1656, 1928, 1946, 2291
HpySE526I ACGT 9 cut(s) 139, 155, 351, 793, 882, 1269, 1450, 1939, 2305
Hsp92I GRCGYC 2 cut(s) 1573, 1900
HspAI GCGC 1 cut(s) 1900
KasI GGCGCC 1 cut(s) 1899
Kpn2I TCCGGA 1 cut(s) 2098
Ksp22I TGATCA 1 cut(s) 937
Kzo9I GATC 7 cut(s) 231, 297, 689, 876, 937, 1495, 1652
LguI GCTCTTC 1 cut(s) 1103
LmnI GCTCC 2 cut(s) 286, 1728
Lsp1109I GCAGC 2 cut(s) 463, 1456
LweI GCATC 5 cut(s) 154, 1303, 1479, 1750, 2073
MaeI CTAG 4 cut(s) 134, 221, 761, 1031
MaeII ACGT 9 cut(s) 139, 155, 351, 793, 882, 1269, 1450, 1939, 2305
MaeIII GTNAC 4 cut(s) 1358, 1459, 1621, 1940
MalI GATC 7 cut(s) 233, 299, 691, 878, 939, 1497, 1654
MboI GATC 7 cut(s) 231, 297, 689, 876, 937, 1495, 1652
MfeI CAATTG 2 cut(s) 950, 1317
MflI RGATCY 3 cut(s) 231, 689, 1652
MhlI GDGCHC 2 cut(s) 1098, 2174
Mly113I GGCGCC 1 cut(s) 1900
MlyI GAGTC 6 cut(s) 156, 1626, 1667, 2039, 2125, 2185
MmeI TCCRAC 4 cut(s) 577, 622, 649, 1750
Mph1103I ATGCAT 3 cut(s) 961, 1494, 2320
MroI TCCGGA 1 cut(s) 2098
MroXI GAANNNNTTC 7 cut(s) 604, 1123, 1269, 1340, 1524, 2044, 2205
MseI TTAA 8 cut(s) 206, 425, 528, 1221, 1833, 1923, 1998, 2160
MslI CAYNNNNRTG 4 cut(s) 208, 274, 1370, 2313
MspI CCGG 2 cut(s) 693, 2099
MspR9I CCNGG 4 cut(s) 49, 451, 1811, 1897
MunI CAATTG 2 cut(s) 950, 1317
Mva1269I GAATGC 1 cut(s) 1123
MvaI CCWGG 4 cut(s) 49, 451, 1811, 1897
MvnI CGCG 2 cut(s) 128, 263
MwoI GCNNNNNNNGC 7 cut(s) 485, 1489, 1498, 1720, 1788, 1792, 1897
NarI GGCGCC 1 cut(s) 1900
NdeII GATC 7 cut(s) 231, 297, 689, 876, 937, 1495, 1652
NlaIV GGNNCC 2 cut(s) 691, 1901
NmuCI GTSAC 1 cut(s) 1621
NsiI ATGCAT 3 cut(s) 961, 1494, 2320
NspI RCATGY 4 cut(s) 368, 959, 1112, 1675
OliI CACNNNNGTG 1 cut(s) 274
PaeI GCATGC 2 cut(s) 959, 1112
PaeR7I CTCGAG 1 cut(s) 281
PagI TCATGA 2 cut(s) 940, 1485
PciI ACATGT 2 cut(s) 364, 1671
PciSI GCTCTTC 1 cut(s) 1103
PcsI WCGNNNNNNNCGW 2 cut(s) 17, 924
PctI GAATGC 1 cut(s) 1123
PdmI GAANNNNTTC 7 cut(s) 604, 1123, 1269, 1340, 1524, 2044, 2205
PfeI GAWTC 6 cut(s) 266, 605, 788, 977, 1535, 1607
PfoI TCCNGGA 1 cut(s) 47
PkrI GCNGC 4 cut(s) 27, 130, 478, 1446
PleI GAGTC 6 cut(s) 155, 1626, 1666, 2038, 2125, 2185
PluTI GGCGCC 1 cut(s) 1903
PmaCI CACGTG 1 cut(s) 794
PmlI CACGTG 1 cut(s) 794
PpsI GAGTC 6 cut(s) 155, 1626, 1666, 2038, 2125, 2185
Ppu21I YACGTR 1 cut(s) 794
PpuMI RGGWCCY 1 cut(s) 105
PscI ACATGT 2 cut(s) 364, 1671
PshBI ATTAAT 1 cut(s) 206
PsiI TTATAA 2 cut(s) 1007, 2213
Psp124BI GAGCTC 1 cut(s) 1098
Psp1406I AACGTT 2 cut(s) 1269, 1450
Psp5II RGGWCCY 1 cut(s) 105
Psp6I CCWGG 4 cut(s) 47, 449, 1809, 1895
PspCI CACGTG 1 cut(s) 794
PspGI CCWGG 4 cut(s) 47, 449, 1809, 1895
PspN4I GGNNCC 2 cut(s) 691, 1901
PspPI GGNCC 4 cut(s) 105, 115, 946, 1993
PspPPI RGGWCCY 1 cut(s) 105
PsrI GAACNNNNNNTAC 2 cut(s) 56, 88
PstI CTGCAG 1 cut(s) 1446
PstNI CAGNNNCTG 1 cut(s) 1990
PsuI RGATCY 3 cut(s) 231, 689, 1652
RsaI GTAC 8 cut(s) 65, 915, 1056, 1172, 1678, 1687, 1868, 2238
RsaNI GTAC 8 cut(s) 64, 914, 1055, 1171, 1677, 1686, 1867, 2237
RseI CAYNNNNRTG 4 cut(s) 208, 274, 1370, 2313
SacI GAGCTC 1 cut(s) 1098
SalI GTCGAC 1 cut(s) 926
SapI GCTCTTC 1 cut(s) 1103
SaqAI TTAA 8 cut(s) 206, 425, 528, 1221, 1833, 1923, 1998, 2160
SatI GCNGC 4 cut(s) 26, 129, 477, 1445
Sau3AI GATC 7 cut(s) 231, 297, 689, 876, 937, 1495, 1652
Sau96I GGNCC 4 cut(s) 105, 115, 946, 1993
ScaI AGTACT 1 cut(s) 915
SchI GAGTC 6 cut(s) 156, 1626, 1667, 2039, 2125, 2185
ScrFI CCNGG 4 cut(s) 49, 451, 1811, 1897
SduI GDGCHC 2 cut(s) 1098, 2174
SfaNI GCATC 5 cut(s) 154, 1303, 1479, 1750, 2073
SfcI CTRYAG 3 cut(s) 307, 1442, 1982
SfoI GGCGCC 1 cut(s) 1901
Sfr274I CTCGAG 1 cut(s) 281
SinI GGWCC 4 cut(s) 105, 115, 946, 1993
SlaI CTCGAG 1 cut(s) 281
SmiMI CAYNNNNRTG 4 cut(s) 208, 274, 1370, 2313
SmlI CTYRAG 6 cut(s) 76, 281, 1091, 1153, 1745, 2087
SmoI CTYRAG 6 cut(s) 76, 281, 1091, 1153, 1745, 2087
SphI GCATGC 2 cut(s) 959, 1112
SsiI CCGC 7 cut(s) 26, 128, 143, 167, 263, 764, 1864
SspDI GGCGCC 1 cut(s) 1899
SspMI CTAG 4 cut(s) 134, 221, 761, 1031
SstI GAGCTC 1 cut(s) 1098
StyD4I CCNGG 4 cut(s) 47, 449, 1809, 1895
TaaI ACNGT 9 cut(s) 308, 749, 1054, 1175, 1465, 1681, 1986, 2006, 2248
TaiI ACGT 9 cut(s) 142, 158, 354, 796, 885, 1272, 1453, 1942, 2308
TaqI TCGA 8 cut(s) 282, 495, 927, 1504, 1857, 1878, 2153, 2281
TatI WGTACW 5 cut(s) 913, 1054, 1170, 1676, 1685
TauI GCSGC 2 cut(s) 28, 131
TfiI GAWTC 6 cut(s) 266, 605, 788, 977, 1535, 1607
Tru1I TTAA 8 cut(s) 206, 425, 528, 1221, 1833, 1923, 1998, 2160
Tru9I TTAA 8 cut(s) 206, 425, 528, 1221, 1833, 1923, 1998, 2160
TscAI CASTG 5 cut(s) 62, 1194, 1257, 1441, 1474
TseFI GTSAC 1 cut(s) 1621
TseI GCWGC 2 cut(s) 476, 1444
Tsp45I GTSAC 1 cut(s) 1621
TspGWI ACGGA 1 cut(s) 128
TspRI CASTG 5 cut(s) 62, 1194, 1257, 1441, 1474
VpaK11BI GGWCC 4 cut(s) 105, 115, 946, 1993
VspI ATTAAT 1 cut(s) 206
XagI CCTNNNNNAGG 1 cut(s) 2099
XapI RAATTY 5 cut(s) 672, 728, 1284, 1642, 2270
XceI RCATGY 4 cut(s) 368, 959, 1112, 1675
XhoI CTCGAG 1 cut(s) 281
XmiI GTMKAC 2 cut(s) 588, 927
XmnI GAANNNNTTC 7 cut(s) 604, 1123, 1269, 1340, 1524, 2044, 2205
XspI CTAG 4 cut(s) 134, 221, 761, 1031
ZrmI AGTACT 1 cut(s) 915
Zsp2I ATGCAT 3 cut(s) 961, 1494, 2320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.